View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1720_low_50 (Length: 332)

Name: NF1720_low_50
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1720_low_50
NF1720_low_50
[»] chr4 (2 HSPs)
chr4 (5-287)||(2464422-2464704)
chr4 (42-184)||(6736516-6736649)
[»] scaffold0312 (1 HSPs)
scaffold0312 (5-287)||(18947-19225)
[»] chr1 (1 HSPs)
chr1 (5-287)||(411345-411623)
[»] chr2 (3 HSPs)
chr2 (15-287)||(11951604-11951877)
chr2 (84-287)||(28173416-28173620)
chr2 (42-287)||(2743964-2744204)
[»] chr3 (3 HSPs)
chr3 (5-184)||(29896669-29896850)
chr3 (15-287)||(45227699-45227974)
chr3 (200-286)||(29896577-29896662)
[»] chr7 (1 HSPs)
chr7 (5-132)||(26300141-26300269)
[»] chr6 (1 HSPs)
chr6 (42-287)||(29935079-29935320)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 287
Target Start/End: Original strand, 2464422 - 2464704
Alignment:
Q  5 tgtcgaagaatattgacttggatattgcacgtatttgttttagcatgaatgagttttcaaaggatgaaatttttagttaaaaaattgtttggataaagac 104  Q
    ||||||| ||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2464422 tgtcgaataatgttgacttggatattgcatgtattttttttagcatgaatgagttttcaaaggatgaaatttttagttaaaaaatggtttggataaagac 2464521  T
Q  105 cggtgaaaacttcactcatccattatgtccactttgtttgtcatgctcccattgaattcttgtgactcaccatttctttgtattcannnnnnnnatattc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||    
T  2464522 cggtgaaaacttcactcatccattatgtccactttgtttgtcatgctcccattgaattcttgtgactcaccatttctttgtattcattttatttttattc 2464621  T
Q  205 acagtttggaaaggattaatctcttggagttttcatctttaccaaagacatctatgctctgcggtagatctctagcttgacca 287  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2464622 acagtttgcaaaggattaatctcttggagttttcatctttaccgaagacatctatgctctgcggtagatctctagcttgacca 2464704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 42 - 184
Target Start/End: Complemental strand, 6736649 - 6736516
Alignment:
Q  42 ttttagcatgaatgagttttcaaaggatgaaatttttagttaaaaaattgtttggataaagaccggtgaaaacttcactcatccattatgtccactttgt 141  Q
    |||||||||||||  | ||||||||||||||| |||||||| ||||||||||||| |||||||||         ||||| | ||||||| || |||||||    
T  6736649 ttttagcatgaatttgctttcaaaggatgaaacttttagtttaaaaattgtttgggtaaagaccg---------tcacttacccattatttctactttgt 6736559  T
Q  142 ttgtcatgctcccattgaattcttgtgactcaccatttctttg 184  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  6736558 ttgtcatgctcccgttgaattcttgtgactcaccatttctttg 6736516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 287
Target Start/End: Original strand, 18947 - 19225
Alignment:
Q  5 tgtcgaagaatattgacttggatattgcacgtatttgttttag-catgaatgagttttcaaaggatgaaatttttagttaaaaaattgtttggataaaga 103  Q
    ||||||| | ||||||| ||||||||||| |||||| |||| | ||||||||||||| |||| |||||||||||||||| ||||||||||||| ||||||    
T  18947 tgtcgaatagtattgacgtggatattgcaagtattttttttgggcatgaatgagtttccaaatgatgaaatttttagtttaaaaattgtttgggtaaaga 19046  T
Q  104 ccggtgaaaacttcactcatccattatgtccactttgtttgtcatgctcccattgaattcttgtgactcaccatttctttgtattcannnnnnnnatatt 203  Q
    |||||||||  |||||  ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||  ||||         | ||    
T  19047 ccggtgaaattttcacctatccattatgtccactttgtttgtcatgctctcattgaattattgtgactcaccatttctttggtttcatttc-----tttt 19141  T
Q  204 cacagtttggaaaggattaatctcttggagttttcatctttaccaaagacatctatgctctgcggtagatctctagcttgacca 287  Q
    ||||| ||| ||| |||||||||| | |||||||||| | ||||||| ||||||||||  ||||||||| ||||| ||||||||    
T  19142 cacagattgcaaatgattaatctcatagagttttcatgtctaccaaaaacatctatgccttgcggtagacctctatcttgacca 19225  T

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Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 287
Target Start/End: Complemental strand, 411623 - 411345
Alignment:
Q  5 tgtcgaagaatattgacttggatattgcacgtatttgttttag-catgaatgagttttcaaaggatgaaatttttagttaaaaaattgtttggataaaga 103  Q
    ||||||| | ||||||| ||||||||||| |||||| |||| | ||||||||||||| |||| |||||||||||||||| ||||||||||||| ||||||    
T  411623 tgtcgaatagtattgacgtggatattgcaagtattttttttgggcatgaatgagtttccaaatgatgaaatttttagtttaaaaattgtttgggtaaaga 411524  T
Q  104 ccggtgaaaacttcactcatccattatgtccactttgtttgtcatgctcccattgaattcttgtgactcaccatttctttgtattcannnnnnnnatatt 203  Q
    |||||||||  |||||  ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||  ||||         | ||    
T  411523 ccggtgaaattttcacctatccattatgtccactttgtttgtcatgctctcattgaattattgtgactcaccatttctttggtttcatttc-----tttt 411429  T
Q  204 cacagtttggaaaggattaatctcttggagttttcatctttaccaaagacatctatgctctgcggtagatctctagcttgacca 287  Q
    ||||| ||| ||| |||||||||| | |||||||||| | ||||||| ||||||||||  ||||||||| ||||| ||||||||    
T  411428 cacagattgcaaatgattaatctcatagagttttcatgtctaccaaaaacatctatgccttgcggtagacctctatcttgacca 411345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 15 - 287
Target Start/End: Original strand, 11951604 - 11951877
Alignment:
Q  15 tattgacttggatattgcacgtatttgttttag-catgaatgagttttcaaaggatgaaatttttagttaaaaaattgtttggataaagaccggtgaaaa 113  Q
    ||||||||| |||||| || | |||| |||| | ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  11951604 tattgacttagatattacaaggattttttttgggcatgaatgagtttccaaaggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaat 11951703  T
Q  114 cttcactcatccatt--atgtccactttgtttgtcatgctcccattgaattcttgtgactcaccatttctttgtattcannnnnnnnatattcacagttt 211  Q
     |||| | ||| |||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||          ||||| || ||    
T  11951704 tttcatttatctattaaatgtccactttgtttgtcatgctcccattgaattattgtgactcaccatttctttggtttcattttttca--attcaaaggtt 11951801  T
Q  212 ggaaaggattaatctcttggagttttcatctttaccaaagacatctatgctctgcggtagatctctagcttgacca 287  Q
    | ||| |||||||||| |||||||||||| || || ||| ||||||||||| ||||||||||||||| ||||||||    
T  11951802 gcaaatgattaatctcatggagttttcatgttcactaaaaacatctatgctttgcggtagatctctaccttgacca 11951877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 84 - 287
Target Start/End: Original strand, 28173416 - 28173620
Alignment:
Q  84 aaaaattgtttggataaagaccggtgaaaacttcactcatccattatgtccactttgtttgtcatgctcccattgaattcttgtgactcaccatttcttt 183  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||    
T  28173416 aaaaattgtttggataaagaccggtgaaaacttcacttgtccattatgtccactttgtttgttatgaccccattgaattcttgtgactcaccatttcttt 28173515  T
Q  184 gtattcannnnnnnnatattcacagtttggaaaggatt-aatctcttggagttttcatctttaccaaagacatctatgctctgcggtagatctctagctt 282  Q
    |  ||||        | | ||| |||||| |||||||| ||||||||||||||||| | | ||  ||| ||| ||||||| ||||||||||||||| |||    
T  28173516 gatttcattttttttagagtcagagtttgcaaaggattaaatctcttggagttttcttgtctaggaaaaacacctatgctatgcggtagatctctatctt 28173615  T
Q  283 gacca 287  Q
    |||||    
T  28173616 gacca 28173620  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 42 - 287
Target Start/End: Original strand, 2743964 - 2744204
Alignment:
Q  42 ttttagcatgaatgagttttcaaaggatgaaatttttagttaaaaaattgtttggataaagaccggtgaaaacttcactcat--ccattatgtccacttt 139  Q
    |||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| |||||||||      |||| || |||  ||||||| |  |||||    
T  2743964 ttttagcatgaatgagttttcaaatgatgaaacttttagtttaaaaattgtttgggtaaagaccgtc----actt-acccatacccattatttttacttt 2744058  T
Q  140 gtttgtcatgctcccattgaattcttgtgactcaccatttctttgtattcannnnnnnnatattcacagtttggaaaggattaatctcttggagttttca 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||          ||||| || ||| ||| |||||||||| |||||||||||    
T  2744059 gtttgtcatgctcccattgaattcttgtgactcaccatttctttggtttcattttttga--attcaaagattgcaaaagattaatctcatggagttttca 2744156  T
Q  240 tctttaccaaagacatctatgctctgcggtagatctctagcttgacca 287  Q
      ||||||||| |||| ||| || || |||||||||||  ||||||||    
T  2744157 ggtttaccaaaaacatatattctttgtggtagatctctgtcttgacca 2744204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 29896850 - 29896669
Alignment:
Q  5 tgtcgaagaatattgacttggatattgcacgtatttgtttt-agcatgaatgagttttcaaaggatgaaatttttagtt--aaaaaattgtttggataaa 101  Q
    ||||||| ||||||||||||||||||||| | |||| |||| |||||||||||| ||| |||||||||| |||||||||  |||||| || |||||||||    
T  29896850 tgtcgaataatattgacttggatattgcaaggatttctttttagcatgaatgagctttaaaaggatgaa-tttttagtttaaaaaaaatggttggataaa 29896752  T
Q  102 gaccggtgaaaacttcactcatccattatgtccactttgtttgtcatgctcccattgaattcttgtgactcaccatttctttg 184  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||    
T  29896751 gaccggtgaaaacatcactcatccattatgtccacttggtttgtcatgctcccattgaattcttgtgattcatcatttctttg 29896669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 287
Target Start/End: Original strand, 45227699 - 45227974
Alignment:
Q  15 tattgacttggatattgcacgtatt-tgttttagcatgaatgagttttcaaaggatgaaatttttagttaaaaaattgtttggataaagaccggtgaaaa 113  Q
    ||||||||| | ||||||| ||||| | ||||||| |||||||| |||| |||||||||||| |||||| ||||||||||||| |||||||||||||||     
T  45227699 tattgactttgctattgcaagtattattttttagcgtgaatgagctttcgaaggatgaaattgttagtttaaaaattgtttgggtaaagaccggtgaaat 45227798  T
Q  114 cttcactcatccattatgt-ccactttgtttgtcatgctcccattgaattcttgtgactcaccatttcttt-gtattcannnnnnnnatattcacagttt 211  Q
     |||||| | ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||          | |||||||| ||    
T  45227799 tttcacttacccattattttccactttgtttgtcatgctcccattgaattcttgtgactcaccatttctttggttttatttttttttagattcacagatt 45227898  T
Q  212 ggaaaggattaatctcttggagttttcatctttaccaaagacatctatgctctgcggtagatctctagcttgacca 287  Q
    | |||||||||||||| |||||||||||  ||||||||| |||| |||||| || ||||||| |||| ||||||||    
T  45227899 gcaaaggattaatctcatggagttttcaggtttaccaaaaacatatatgctttgtggtagatttctatcttgacca 45227974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 29896662 - 29896577
Alignment:
Q  200 tattcacagtttggaaaggattaatctcttggagttttcatctttaccaaagacatctatgctctgcggtagatctctagcttgacc 286  Q
    ||||||||||||| ||||||  ||||||||||||  ||||| || | |||| ||||||||||| |||  |||||||||| |||||||    
T  29896662 tattcacagtttgcaaaggacaaatctcttggag-attcatgttcatcaaaaacatctatgctttgcattagatctctatcttgacc 29896577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 26300269 - 26300141
Alignment:
Q  5 tgtcgaagaatattgacttggatattgcacgtatttgtttt-agcatgaatgagttttcaaaggatgaaatttttagttaaaaaattgtttggataaaga 103  Q
    ||||||| ||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  26300269 tgtcgaataatgttgacttggatattgcacgtatttttttttagcatgaatgagttttcaaaggatgaaatttttagtttaaaaattgtttggataatga 26300170  T
Q  104 ccggtgaaaacttcactcatccattatgt 132  Q
    ||| |||||||||||||||||||||||||    
T  26300169 ccgatgaaaacttcactcatccattatgt 26300141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 287
Target Start/End: Original strand, 29935079 - 29935320
Alignment:
Q  42 ttttagcatgaatgagttttcaaaggatgaaatttttagttaaaaaattgtttggataaagaccggtgaaaacttcactcat--ccattatgtccacttt 139  Q
    |||||||||||||||| ||||||| ||||||| |||||||| ||||||||||||| |||||||||      |||| || |||  ||||||| |  |||||    
T  29935079 ttttagcatgaatgagctttcaaatgatgaaacttttagtttaaaaattgtttgggtaaagaccgtc----actt-acccatacccattatttttacttt 29935173  T
Q  140 gtttgtcatgctcccattgaattcttgtgactcaccatttctttgtattcannnnnnnnatattcacagtttggaaaggattaatctcttggagttttca 239  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  ||||        | ||||| || ||| ||| |||||||||| |||||||||||    
T  29935174 gtttgtcatgctcccattgaattcttgtgacttaccatttctttggtttcatttttttaa-attcaaagattgcaaaagattaatctcatggagttttca 29935272  T
Q  240 tctttaccaaagacatctatgctctgcggtagatctctagcttgacca 287  Q
      ||||||||| |||| ||| || || |||||||||||  ||||||||    
T  29935273 ggtttaccaaaaacatatattctttgtggtagatctctgtcttgacca 29935320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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