View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_54 (Length: 324)
Name: NF1720_low_54
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 39098956 - 39099261
Alignment:
| Q |
1 |
tgaagagcttagtgaatcacatatgatgaggactaaccaaagtattgtcaaatgtcaatagcttagaataaaaatgagttgaataaatcaacccaccagg |
100 |
Q |
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| T |
39098956 |
tgaagagcttagtgaatcacatatgatgaggactaaccaaagtattgtcaaatgtcaatagcttagaataaaaatgagttgaataaatcaacccactagg |
39099055 |
T |
|
| Q |
101 |
caagcctgcaatcaatcttgttgagttttgactttagctgtggccctagnnnnnnntctgatagcattcccacaccatgaaaatttgaatctaaataatt |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39099056 |
caagcctgccatcaatcttgttgagttttgactttagctgtggccctag-aaaaaatctgatagcattcccacaccatgaaaatttgaatctaaataatt |
39099154 |
T |
|
| Q |
201 |
gcattctcattatatgtttggtttgatgtttattgcacaatttcatcgaagcaacaaaaccaaacgtcgcatcaacttagtatttcaccgtgatttggat |
300 |
Q |
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|||||||||||||||| ||||||||| |||||| | |||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
39099155 |
gcattctcattatatg-ttggtttgacgtttatcgtacaatttcatcgaagcaataaaactaaacgtcgcatcaacttgatatttcaccgtgatttggat |
39099253 |
T |
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| Q |
301 |
gaatgcac |
308 |
Q |
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|||||||| |
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| T |
39099254 |
gaatgcac |
39099261 |
T |
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