View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1720_low_55 (Length: 319)

Name: NF1720_low_55
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1720_low_55
NF1720_low_55
[»] chr1 (1 HSPs)
chr1 (16-309)||(34818595-34818888)


Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 34818595 - 34818888
Alignment:
Q  16 cacgaacaaaattacgccagagacatatgtccaattttagcatctgaattacaattatgcttcaaaattcaaataggattacaattccggtggaaaggac 115  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34818595 cacgaacaaaattacgccggagacagatgtccaattttagcatctgaattacaattatgcttcaaaattcaaataggatcacaattccggtggaaaggac 34818694  T
Q  116 tatgtgaccnnnnnnntaaatgtactcattgattacattgccttgaattatatatatttaatgtaaagtcaacatatcacttaagtttgacatgtctaga 215  Q
    ||| |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34818695 tatatgaccaaaaaaataaatgtactcattgattacattgccttgaattatatatatttaatgtaaagtcaacatatcacttaagtttgacatgtccaga 34818794  T
Q  216 actataactgcatagtaatgtcaccaatggttgcatgaaacgttgcatgaaatttcttcttgtgagcattggaaagacaaatttcttcttgatg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34818795 actataactgcatagtaatgtcaccaatggttgcatgaaacgttgcatgaaatttcttcttgtgagcattggaaagacaaatttcttcttgatg 34818888  T

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