View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_58 (Length: 306)
Name: NF1720_low_58
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 12 - 292
Target Start/End: Original strand, 54302593 - 54302873
Alignment:
| Q |
12 |
aattcttatggccaaaaattcatcaatcgatccatctgtcaaagaaaataaattatttccaattttcaaattgatttgagttcagaaatgtcttcatcat |
111 |
Q |
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| T |
54302593 |
aattcttatggccaaaaattcatcaatcgatccatctgtcaaagaaaataaattatttccaattttcaaattgatttgagttaagaaatgtcttcatcat |
54302692 |
T |
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| Q |
112 |
ttgatgcactccaaaaacaatcagctgccgtagtgataatatagacttcaatacctcttaaagccaaatgatctgcaacaaattctctaatctgcagaca |
211 |
Q |
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| T |
54302693 |
ttgatgcactccaaaaacaatcagctgccgtagtgataatatggacttcaatacctcttaaagccaaatgatccgcaacaaattctctaatctgcagaca |
54302792 |
T |
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| Q |
212 |
atttcaatgtaaagaaagagttaacacgatggcaactttagagcttgacattttgaaaaaagtaaagggtgatttcagaat |
292 |
Q |
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| T |
54302793 |
atttgaatgtaaagaaagagctaacactatggcaactttagagcttgacattctgaaaaaagtaaagggtgatttcagaat |
54302873 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 31306903 - 31306850
Alignment:
| Q |
158 |
ttcaatacctcttaaagccaaatgatctgcaacaaattctctaatctgcagaca |
211 |
Q |
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|||||||||||||| |||| || ||||||||||| ||||||||||||||||| |
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| T |
31306903 |
ttcaatacctcttagtgccatattttctgcaacaaaatctctaatctgcagaca |
31306850 |
T |
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