View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_59 (Length: 302)
Name: NF1720_low_59
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_59 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: scaffold0287 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 15530 - 15806
Alignment:
| Q |
11 |
cacagaacctacttgtcgcagctaccgacacaacttcagccacatcggtttgggcgatgactggattaatgaagaatccaagagcaatgaagaaagctca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15530 |
cacagaacctacttgtcgcagctaccgacacaacttcagccacatcggtttgggcgatgactggattaatgaagaatccaagagcaatgaagaaagctca |
15629 |
T |
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| Q |
111 |
agaagaaattagaaacatatgtggcaaaaaagagttcatagatgaagatgatattcaaaagcttgtatatctcaaggctgtgataaaagagacattaaga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
15630 |
agaagaaattagaaacatatgtggcaaaaaagagttcatagatgaagatgatattcaaaagcttgtatatcttaaggctgtgataaaagaaacattaaga |
15729 |
T |
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| Q |
211 |
ttctatgcaccagcaccactagccccaagagagaccagtaaaagtttcattctaaatggatataaaatagaaccaaa |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15730 |
ttctatgcaccagcaccactagccccaagagagaccagtaaaagtttcattctaaatggacataaaatagaaccaaa |
15806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 287
Target Start/End: Complemental strand, 3630555 - 3630279
Alignment:
| Q |
11 |
cacagaacctacttgtcgcagctaccgacacaacttcagccacatcggtttgggcgatgactggattaatgaagaatccaagagcaatgaagaaagctca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3630555 |
cacagaacctacttgtcgcagctaccgacacaacttcagccacatcggtttgggcgatgactggattaatgaagaatccaagagcaatgaagaaagctca |
3630456 |
T |
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| Q |
111 |
agaagaaattagaaacatatgtggcaaaaaagagttcatagatgaagatgatattcaaaagcttgtatatctcaaggctgtgataaaagagacattaaga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
3630455 |
agaagaaattagaaacatatgtggcaaaaaagagttcatagatgaagatgatattcaaaagcttgtatatcttaaggctgtgataaaagaaacattaaga |
3630356 |
T |
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| Q |
211 |
ttctatgcaccagcaccactagccccaagagagaccagtaaaagtttcattctaaatggatataaaatagaaccaaa |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3630355 |
ttctatgcaccagcaccactagccccaagagagaccagtaaaagtttcattctaaatggacataaaatagaaccaaa |
3630279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 287
Target Start/End: Complemental strand, 3620173 - 3619903
Alignment:
| Q |
11 |
cacagaacctacttgtcgcagctaccgacacaacttcagccacatcggtttgggcgatgactggattaatgaagaatccaagagcaatgaagaaagctca |
110 |
Q |
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||||||| |||||||| |||||||| ||||||| | |||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
3620173 |
cacagaatctacttgtagcagctactgacacaagtgcagccacatcagtttgggtgatgaccggattaataaagaatccaagagcaatgaagaaagctca |
3620074 |
T |
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| Q |
111 |
agaagaaattagaaacatatgtggcaaaaaagagttcatagatgaagatgatattcaaaagcttgtatatctcaaggctgtgataaaagagacattaaga |
210 |
Q |
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| T |
3620073 |
agaagaaattagaaacat------caaaaaagagttcatagatgaagatgatattcaaaagtttgtatattttaaggctgtgataaaagagacattaaga |
3619980 |
T |
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| Q |
211 |
ttctatgcaccagcaccactagccccaagagagaccagtaaaagtttcattctaaatggatataaaatagaaccaaa |
287 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3619979 |
ttctattcaccagcaccactagcccctagagagaccagtaaaagtttcacactaaatggatataaaatagaaccaaa |
3619903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 46 - 212
Target Start/End: Original strand, 8979102 - 8979268
Alignment:
| Q |
46 |
tcagccacatcggtttgggcgatgactggattaatgaagaatccaagagcaatgaagaaagctcaagaagaaattagaaacatatgtggcaaaaaagagt |
145 |
Q |
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||||||||||| |||||||| ||||||| |||| || || ||||||| ||||| |||| ||||| |||||||| ||| | | || |||||||| | |
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| T |
8979102 |
tcagccacatcagtttgggctatgactgccctaataaaaaacccaagagtaatgagaaaagtgcaagaggaaattaggaacttgggaggtaaaaaagatt |
8979201 |
T |
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| Q |
146 |
tcatagatgaagatgatattcaaaagcttgtatatctcaaggctgtgataaaagagacattaagatt |
212 |
Q |
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| |||||||||||||||||||||| | ||||| | ||||| ||||||||||||||||||||||| |
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| T |
8979202 |
ttttagatgaagatgatattcaaaattctctatatttgaaggcagtgataaaagagacattaagatt |
8979268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 170
Target Start/End: Complemental strand, 9000507 - 9000384
Alignment:
| Q |
47 |
cagccacatcggtttgggcgatgactggattaatgaagaatccaagagcaatgaagaaagctcaagaagaaattagaaacatatgtggcaaaaaagagtt |
146 |
Q |
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|||||||||| |||||||| ||||||| |||||||| || ||||||| ||||| ||||| ||||| ||||||||||| | | || ||||||| || |
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| T |
9000507 |
cagccacatcagtttgggctatgactgccttaatgaaaaacccaagagtaatgaggaaagtacaagatgaaattagaaatttgggaggtgaaaaagattt |
9000408 |
T |
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| Q |
147 |
catagatgaagatgatattcaaaa |
170 |
Q |
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|||||||||||||||||||||| |
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| T |
9000407 |
tttagatgaagatgatattcaaaa |
9000384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 8966556 - 8966432
Alignment:
| Q |
88 |
ccaagagcaatgaagaaagctcaagaagaaattagaaacatatgtggcaaaaaagagttcatagatgaagatgatattcaaaagcttgtatatctcaagg |
187 |
Q |
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||||||| ||||||||||| |||||||||||||||||| | | | |||||||| |||||||| ||| ||||||||||||| | |||| | |||| |
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| T |
8966556 |
ccaagagtaatgaagaaagtacaagaagaaattagaaacttgggaagtaaaaaagaattcatagacgaaaatgatattcaaaatttcccatatttaaagg |
8966457 |
T |
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| Q |
188 |
ctgtgataaaagagacattaagatt |
212 |
Q |
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| |||||||||||||| || ||||| |
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| T |
8966456 |
cagtgataaaagagacgttgagatt |
8966432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 20074379 - 20074255
Alignment:
| Q |
46 |
tcagccacatcggtttgggcgatgactggattaatgaagaatccaagagcaatgaagaaagctcaagaagaaattagaaacatatgtggcaaaaaagagt |
145 |
Q |
| |
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||||||||| | || ||||| ||||||| |||||| || |||||||||| ||||||||||| ||| |||| |||||||| | | |||||||| | |
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| T |
20074379 |
tcagccacaacagtatgggctatgactgcattaataaaaaatccaagagtaatgaagaaagtacaacaagagattagaaattcaaaagttaaaaaagaat |
20074280 |
T |
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| Q |
146 |
tcatagatgaagatgatattcaaaa |
170 |
Q |
| |
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| ||||||||||||||||| ||||| |
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| T |
20074279 |
ttatagatgaagatgatatacaaaa |
20074255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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