View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1720_low_6 (Length: 636)

Name: NF1720_low_6
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1720_low_6
NF1720_low_6
[»] chr2 (7 HSPs)
chr2 (16-624)||(27881913-27882521)
chr2 (188-306)||(39491023-39491142)
chr2 (197-253)||(2854396-2854452)
chr2 (200-252)||(7920219-7920271)
chr2 (200-288)||(14812314-14812401)
chr2 (196-248)||(31633501-31633553)
chr2 (211-253)||(15335859-15335901)
[»] chr3 (4 HSPs)
chr3 (196-317)||(27213971-27214092)
chr3 (196-281)||(45249395-45249479)
chr3 (211-243)||(23629307-23629339)
chr3 (211-243)||(39611663-39611695)
[»] chr8 (5 HSPs)
chr8 (196-317)||(13177790-13177910)
chr8 (196-250)||(515155-515209)
chr8 (125-253)||(32967728-32967853)
chr8 (186-283)||(42446553-42446648)
chr8 (128-164)||(34086656-34086692)
[»] chr6 (2 HSPs)
chr6 (211-301)||(7984547-7984636)
chr6 (211-308)||(40018-40114)
[»] chr5 (6 HSPs)
chr5 (211-308)||(36487184-36487280)
chr5 (200-281)||(12382582-12382662)
chr5 (196-251)||(39180396-39180451)
chr5 (120-170)||(7248519-7248569)
chr5 (200-252)||(3135639-3135691)
chr5 (213-281)||(20894227-20894294)
[»] chr7 (3 HSPs)
chr7 (200-243)||(33878197-33878240)
chr7 (494-539)||(45508800-45508845)
chr7 (196-288)||(28646650-28646741)
[»] chr4 (2 HSPs)
chr4 (186-253)||(45219023-45219089)
chr4 (200-308)||(29235568-29235675)
[»] chr1 (4 HSPs)
chr1 (211-308)||(32815220-32815316)
chr1 (196-252)||(4044875-4044931)
chr1 (213-281)||(21779973-21780040)
chr1 (200-252)||(38902208-38902260)


Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 16 - 624
Target Start/End: Original strand, 27881913 - 27882521
Alignment:
Q  16 cttatgacatttgttaacgaagcaaaacatagaatttttacattaaaaaacacaatctttaaactcttcaaaagtatattacacactttctaatataata 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27881913 cttatgacatttgttaacgaagcaaaacatagaatttttacattaaaaaatacaatctttaaactcttcaaaagtatattacacactttctaatataata 27882012  T
Q  116 atatttttcgaaaaatgctaacaagtgattttaggaaattatttaagcattcaaaagtagaagtactagtatttttatatttggaaattgtgtgtttatg 215  Q
    |||||||||||||||||||| || |||| |||| |||||||||||||||| |||||||||| ||| |     ||||||||||||||||||||||||||||    
T  27882013 atatttttcgaaaaatgctatcaggtgactttatgaaattatttaagcatccaaaagtagaggtatt-----ttttatatttggaaattgtgtgtttatg 27882107  T
Q  216 acttttacatatgtttgatttgtattttgaagacaaaagtttcttattggaggttctttaaacaatattcttagaacatttgttagtaagacctatattt 315  Q
    |||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||  ||||| |||||||||||||||| |||||||    
T  27882108 acttttacatatatttgatttgtattttcaagacaaaagttttttattggaggttctttaaacaatatctttagagcatttgttagtaagacttatattt 27882207  T
Q  316 ttgtgtagaagtatttgtttttgttaaccaatgctcaatgctttgaggacattcgttaatattttcctaaaaattataattgatagtttttaggacaaat 415  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27882208 ttgtgtaggagtatttgtttttgttaaccaatgctcaatgctttgaggacattcgttaatattttcctaaaaattataattgatagtttttaggacaaat 27882307  T
Q  416 atctaatgcagtcctttaatttaaatgtttgtaacatgttagtcatttaaatttttgatgcaataaattggacctt-aatcataaaatatttacattgtt 514  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||    
T  27882308 atctcatgcagtcctttaatttaaatgtttgtaacatgttagtcatttaaatttttgatgcaataaattggaccttaaatcatgaaatatttacattatt 27882407  T
Q  515 aacatttttcattcaattttgttaagtacttccgtgaccgtttaacattgaagtga----tccaaaacatgtctataatactaaacatgattaattacac 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||    
T  27882408 aacatttttcattcaattttgttaagtacttccgtgaccgtttaacattgaagtgataggtccaaaacatgtctataatactaaacatgattaattacac 27882507  T
Q  611 acattttattcttc 624  Q
    ||||||| ||||||    
T  27882508 acattttcttcttc 27882521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 306
Target Start/End: Original strand, 39491023 - 39491142
Alignment:
Q  188 ttttatatttggaaattgtgtgtttatgactttt-acatatgttt-gatttgtattttgaagacaaaagtttcttattggaggttctttaaacaatattc 285  Q
    |||| |||||| |||||||||  |||||| |||| || ||||||| |||||||||||||||||||| | |||||| ||   | ||||||||||||||||     
T  39491023 ttttttatttgaaaattgtgtaattatgattttttacttatgttttgatttgtattttgaagacaaca-tttctttttatggattctttaaacaatattt 39491121  T
Q  286 ttagaacatttgttagtaaga 306  Q
    |||||||| ||||||| ||||    
T  39491122 ttagaacacttgttagcaaga 39491142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 2854396 - 2854452
Alignment:
Q  197 tggaaattgtgtgtttatgacttttacatatgtttgatttgtattttgaagacaaaa 253  Q
    ||||||||||||  |||||||||||| |||||||| | ||||||||| |||||||||    
T  2854396 tggaaattgtgtagttatgacttttagatatgtttaacttgtattttcaagacaaaa 2854452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 7920271 - 7920219
Alignment:
Q  200 aaattgtgtgtttatgacttttacatatgtttgatttgtattttgaagacaaa 252  Q
    |||||||||  |||||| |||||||| ||||||||||||||||| ||||||||    
T  7920271 aaattgtgtagttatgatttttacatgtgtttgatttgtattttcaagacaaa 7920219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 14812314 - 14812401
Alignment:
Q  200 aaattgtgtgtttatgacttttacatatgtttgatttgtattttgaagacaaaagtttcttattggaggttctttaaacaatattctta 288  Q
    |||||||||  |||| |||||||||||||||||| ||||||||| |||| |||| |||||| |||  | ||| |||||||||| |||||    
T  14812314 aaattgtgtaattataacttttacatatgtttgacttgtattttcaagataaaa-tttctttttgttgtttccttaaacaatactctta 14812401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 31633501 - 31633553
Alignment:
Q  196 ttggaaattgtgtgtttatgacttttacatatgtttgatttgtattttgaaga 248  Q
    |||||||||||||  ||||| ||||||||||||||||| ||||||||| ||||    
T  31633501 ttggaaattgtgtagttatgccttttacatatgtttgacttgtattttcaaga 31633553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 15335901 - 15335859
Alignment:
Q  211 ttatgacttttacatatgtttgatttgtattttgaagacaaaa 253  Q
    |||||||||| |||||||||||| ||||||||| |||||||||    
T  15335901 ttatgactttaacatatgtttgacttgtattttcaagacaaaa 15335859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 196 - 317
Target Start/End: Original strand, 27213971 - 27214092
Alignment:
Q  196 ttggaaattgtgtgtttatgacttttacatatgtttgatttgtattttgaagacaaaagtttcttattggaggttctttaaacaatattcttagaacatt 295  Q
    ||||||||||| |  ||||||||||||||||||||||| ||||||||| ||||| |||||||||| |||   |||| ||||||||| | ||||||||| |    
T  27213971 ttggaaattgtatagttatgacttttacatatgtttgacttgtatttttaagac-aaagtttctttttgtgtgttccttaaacaatgtccttagaacact 27214069  T
Q  296 tgttagtaaga-cctatattttt 317  Q
    |||||  |||| |||||||||||    
T  27214070 tgttaacaagaccctatattttt 27214092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 281
Target Start/End: Original strand, 45249395 - 45249479
Alignment:
Q  196 ttggaaattgtgtgtttatgacttttacatatgtttgatttgtattttgaagacaaaagtttcttattggaggttctttaaacaat 281  Q
    |||||||||||  | |||||||||| ||| |||||||| ||||||||| |||||| || |||||| |||  ||||| |||||||||    
T  45249395 ttggaaattgtacggttatgactttaacaaatgtttgacttgtattttcaagacataa-tttctttttgtgggttccttaaacaat 45249479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 23629307 - 23629339
Alignment:
Q  211 ttatgacttttacatatgtttgatttgtatttt 243  Q
    ||||||||||||||| |||||||||||||||||    
T  23629307 ttatgacttttacatgtgtttgatttgtatttt 23629339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 39611695 - 39611663
Alignment:
Q  211 ttatgacttttacatatgtttgatttgtatttt 243  Q
    |||||||||| ||||||||||||||||||||||    
T  39611695 ttatgactttaacatatgtttgatttgtatttt 39611663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 317
Target Start/End: Original strand, 13177790 - 13177910
Alignment:
Q  196 ttggaaattgtgtgtttatgacttttacatatgtttgatttgtattttgaagacaaaagtttcttattggaggttctttaaacaatattcttagaacatt 295  Q
    ||||||||| |||  ||||||||||||||| ||||||| ||||||||| ||||| ||| |||||| ||| || ||| |||||||||   ||||| ||| |    
T  13177790 ttggaaattatgtagttatgacttttacatgtgtttgacttgtattttcaagac-aaactttctttttgaagattccttaaacaatgcccttaggacact 13177888  T
Q  296 tgttagtaagacctatattttt 317  Q
    |||||| |||||| ||||||||    
T  13177889 tgttagcaagacccatattttt 13177910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 515155 - 515209
Alignment:
Q  196 ttggaaattgtgtgtttatgacttttacatatgtttgatttgtattttgaagaca 250  Q
    |||||||||||||  ||||||||||||||||| ||||| ||||||||| ||||||    
T  515155 ttggaaattgtgtagttatgacttttacatatatttgacttgtattttcaagaca 515209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 125 - 253
Target Start/End: Complemental strand, 32967853 - 32967728
Alignment:
Q  125 gaaaaatgctaacaagtgattttaggaaattatttaagcattcaaaagtagaagtactagtatttttatatttggaaattgtgtgtttatgacttttaca 224  Q
    ||||||||||||||| || |||||||  ||| |||||||||||| ||||||||||| ||  | ||||| |  || ||||||| |  |||||| |||||||    
T  32967853 gaaaaatgctaacaaatgtttttagggtattgtttaagcattcagaagtagaagtatta--acttttaca-atgaaaattgtatagttatgatttttaca 32967757  T
Q  225 tatgtttgatttgtattttgaagacaaaa 253  Q
    |  |||||| |||||||||||||| ||||    
T  32967756 tgagtttgacttgtattttgaagataaaa 32967728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 283
Target Start/End: Complemental strand, 42446648 - 42446553
Alignment:
Q  186 atttttatatttggaaattgtgtgtttatgacttttacatatgtttgatttgtattttgaagacaaaagtttcttattggaggttctttaaacaatat 283  Q
    ||||||||||| | |||||||||  |||| |||||||||||| ||| | || |||||| || |||||| |||||| ||| ||||||||||||||||||    
T  42446648 atttttatatt-gaaaattgtgtagttataacttttacatatatttaacttatatttttaaaacaaaa-tttctttttgtaggttctttaaacaatat 42446553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 34086692 - 34086656
Alignment:
Q  128 aaatgctaacaagtgattttaggaaattatttaagca 164  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  34086692 aaatgctaacaagtgcttttaggatattatttaagca 34086656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 301
Target Start/End: Complemental strand, 7984636 - 7984547
Alignment:
Q  211 ttatgacttttacatatgtttgatttgtattttgaagacaaaagtttcttattggaggttctttaaacaatattcttagaacatttgttag 301  Q
    ||||||||||||||| ||||||| ||||||||| ||||| |||||||||| |||  ||||| ||||||||| | || |||||| |||||||    
T  7984636 ttatgacttttacatgtgtttgacttgtattttcaagac-aaagtttctttttgtgggttcattaaacaatgtcctcagaacacttgttag 7984547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 40114 - 40018
Alignment:
Q  211 ttatgacttttacatatgtttgatttgtattttgaagacaaaagtttcttattggaggttctttaaacaatattcttagaacatttgttagtaagacc 308  Q
    ||||||||||||||| ||||||||||||||||| ||||||||| ||||||  ||  ||||| ||||||||| | |||||  || ||||||| ||||||    
T  40114 ttatgacttttacatgtgtttgatttgtattttcaagacaaaa-tttctttatgtgggttccttaaacaatgtccttagggcacttgttagcaagacc 40018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 36487280 - 36487184
Alignment:
Q  211 ttatgacttttacatatgtttgatttgtattttgaagacaaaagtttcttattggaggttctttaaacaatattcttagaacatttgttagtaagacc 308  Q
    |||||||||| |||||||||||||||||||||| || ||| || |||||| |||  ||||| ||||||||| |||||| | || ||||||| ||||||    
T  36487280 ttatgactttaacatatgtttgatttgtattttcaatacataa-tttctttttgtgggttccttaaacaatgttcttatagcacttgttagcaagacc 36487184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 200 - 281
Target Start/End: Complemental strand, 12382662 - 12382582
Alignment:
Q  200 aaattgtgtgtttatgacttttacatatgtttgatttgtattttgaagacaaaagtttcttattggaggttctttaaacaat 281  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||| | ||  |||||||||||||  | |||| |||||||||    
T  12382662 aaattgtatgtttatgacttttatatatgtttgacttgtatttttatga-taaagtttcttattatatgttccttaaacaat 12382582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 39180451 - 39180396
Alignment:
Q  196 ttggaaattgtgtgtttatgacttttacatatgtttgatttgtattttgaagacaa 251  Q
    |||||||||||||  |||| ||||||| |||||||||| ||||||||| |||||||    
T  39180451 ttggaaattgtgtaattataacttttatatatgtttgacttgtattttcaagacaa 39180396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 7248569 - 7248519
Alignment:
Q  120 ttttcgaaaaatgctaacaagtgattttaggaaattatttaagcattcaaa 170  Q
    |||| ||||||||||||||| || |||||||| ||| ||||||||||||||    
T  7248569 ttttggaaaaatgctaacaaatgtttttaggatattgtttaagcattcaaa 7248519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 3135639 - 3135691
Alignment:
Q  200 aaattgtgtgtttatgacttttacatatgtttgatttgtattttgaagacaaa 252  Q
    |||||||||  |||||||||||| |||||||||| ||||||||| | ||||||    
T  3135639 aaattgtgtagttatgacttttatatatgtttgacttgtatttttatgacaaa 3135691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 20894227 - 20894294
Alignment:
Q  213 atgacttttacatatgtttgatttgtattttgaagacaaaagtttcttattggaggttctttaaacaat 281  Q
    ||||||||||||| ||||||| ||||||||| ||||| |||||||||| ||| || ||  |||||||||    
T  20894227 atgacttttacatgtgtttgacttgtattttcaagac-aaagtttcttcttgtagatttcttaaacaat 20894294  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 33878197 - 33878240
Alignment:
Q  200 aaattgtgtgtttatgacttttacatatgtttgatttgtatttt 243  Q
    |||||||||  |||||||||||||||||||||||||||||||||    
T  33878197 aaattgtgtagttatgacttttacatatgtttgatttgtatttt 33878240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 539
Target Start/End: Original strand, 45508800 - 45508845
Alignment:
Q  494 tcataaaatatttacattgttaacatttttcattcaattttgttaa 539  Q
    |||||||||||||||||||||| |||||||||| ||| || |||||    
T  45508800 tcataaaatatttacattgttaccatttttcatccaacttagttaa 45508845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 288
Target Start/End: Original strand, 28646650 - 28646741
Alignment:
Q  196 ttggaaattgtgtgtttatgacttttacatatgtttgatttgtattttgaagacaaaagtttcttattggaggttctttaaacaatattctta 288  Q
    |||||||||||  | |||||||||| ||| || ||||| || |||||| |||||| || |||||| ||| || ||||||||||||||| ||||    
T  28646650 ttggaaattgtacggttatgactttaacaaatttttgacttatatttttaagacataa-tttctttttgtagattctttaaacaatatcctta 28646741  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 45219089 - 45219023
Alignment:
Q  186 atttttatatttggaaattgtgtgtttatgacttttacatatgtttgatttgtattttgaagacaaaa 253  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||| | || |||||| |||||||||    
T  45219089 atttttatatttg-aaattgtgtacttatgacttttacatatgttttacttatattttaaagacaaaa 45219023  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 308
Target Start/End: Original strand, 29235568 - 29235675
Alignment:
Q  200 aaattgtgtgtttatgacttttacatatgtttgatttgtattttgaagacaaaagtttcttattggaggttctttaaacaatattcttagaacatttgtt 299  Q
    |||||||||  |||| |||||||| | ||||||| || |||||| ||||||||| |||||| |||  ||||| ||| | |||  |||||| ||| |||||    
T  29235568 aaattgtgtagttataacttttacctgtgtttgacttctattttcaagacaaaa-tttctttttgtgggttccttagataatgctcttaggacacttgtt 29235666  T
Q  300 agtaagacc 308  Q
    |||||||||    
T  29235667 agtaagacc 29235675  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 32815220 - 32815316
Alignment:
Q  211 ttatgacttttacatatgtttgatttgtattttgaagacaaaagtttcttattggaggttctttaaacaatattcttagaacatttgttagtaagacc 308  Q
    |||| |||||||||||||||||| ||||||||| |||| |||| | |||| |||   |||||||||||||| || ||| | || || |||||||||||    
T  32815220 ttattacttttacatatgtttgacttgtatttttaagataaaa-tatctttttgtgagttctttaaacaatgtttttaaagcacttattagtaagacc 32815316  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 4044931 - 4044875
Alignment:
Q  196 ttggaaattgtgtgtttatgacttttacatatgtttgatttgtattttgaagacaaa 252  Q
    ||||||||||| |  ||||||||| || |||||||||| ||||||||| ||||||||    
T  4044931 ttggaaattgtatagttatgacttgtatatatgtttgacttgtattttcaagacaaa 4044875  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 21779973 - 21780040
Alignment:
Q  213 atgacttttacatatgtttgatttgtattttgaagacaaaagtttcttattggaggttctttaaacaat 281  Q
    ||||||||||||| ||||||| ||||||||| ||||| |||||||||| ||| || ||  |||||||||    
T  21779973 atgacttttacatgtgtttgacttgtattttcaagac-aaagtttcttcttgtagatttcttaaacaat 21780040  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 38902208 - 38902260
Alignment:
Q  200 aaattgtgtgtttatgacttttacatatgtttgatttgtattttgaagacaaa 252  Q
    |||||||||  |||||||||||| |||||||||| ||| ||||| ||||||||    
T  38902208 aaattgtgtaattatgacttttatatatgtttgacttgaattttcaagacaaa 38902260  T

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