View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1720_low_61 (Length: 299)

Name: NF1720_low_61
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1720_low_61
NF1720_low_61
[»] chr4 (2 HSPs)
chr4 (1-252)||(8978453-8978705)
chr4 (4-282)||(17116123-17116402)
[»] chr5 (1 HSPs)
chr5 (32-110)||(22912333-22912411)
[»] chr1 (2 HSPs)
chr1 (91-154)||(17745477-17745542)
chr1 (79-167)||(19473722-19473815)
[»] chr7 (1 HSPs)
chr7 (79-155)||(26651998-26652075)
[»] scaffold0009 (1 HSPs)
scaffold0009 (93-121)||(55665-55693)
[»] chr2 (1 HSPs)
chr2 (79-111)||(29845282-29845314)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 8978453 - 8978705
Alignment:
Q  1 agcaaagaagtagggagggcattaagaggctacaaaaacattctaactaggtagacacctatctgtaacctctgtccgctaccacctactctatatatat 100  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||| |||||||||||||||| ||||| |||||||||||||||    
T  8978453 agcaaagaagtagggagggcatcaagaggctacaaaaacatcctaactaggttgacacctagctgtaacctctgtccgttaccatctactctatatatat 8978552  T
Q  101 tattaaaaaaggagaaaatattatgtataaga-gagggctaggccaaaatcctcagagaaaataagcggataaccaaatactaagaaaatcttagtttgc 199  Q
    |||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  8978553 tattaaaaaaggagaaaataatatgtataagaggggggctaggccaaaatcctcagagaaaataaacggataactaaatactaagaaaatcttagtttgc 8978652  T
Q  200 aagggctaggaggtggacccatataaaacgggtttgatatccgtccgccttag 252  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  8978653 aagggctagaaggtggacccatatagaacgggtttgatatccgtccgccttag 8978705  T

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Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 282
Target Start/End: Original strand, 17116123 - 17116402
Alignment:
Q  4 aaagaagtagggagggcattaagaggctacaaaaacattctaactaggtagacacctatctgtaacctctgtccgctaccacctactctatata-tatta 102  Q
    |||||||||||||||| |||||||||||| | ||| |||| |||||||| |||| | |  ||||||||   ||| ||||| ||||||||||||| |||||    
T  17116123 aaagaagtagggagggaattaagaggctatacaaatattccaactaggttgacatccaattgtaaccttcatcctctaccccctactctatatattatta 17116222  T
Q  103 ttaaa-aaaggagaaaatattatgtataagagaggg-ctaggccaaaatcctcagagaaaataagcggataaccaaatact-aagaaaatcttagtttgc 199  Q
      ||| ||||||||||||| | |||| ||||| ||| ||||||||||| |||  |||||||||||| || ||||||||||| |||||| ||| | ||||     
T  17116223 aaaaataaaggagaaaataatgtgtacaagagggggactaggccaaaacccttggagaaaataagcagacaaccaaatactaaagaaactctca-tttgg 17116321  T
Q  200 aagggctaggaggtggacccatataaaacgggtttgatatccgtccgccttagtaattttcttcctctaacatttagtgaggt 282  Q
    ||||||||||||||||||||  ||| ||||||||||||||||| | ||||||||||| |||||||| | ||||||||| ||||    
T  17116322 aagggctaggaggtggaccc--atagaacgggtttgatatccggctgccttagtaatcttcttcctatgacatttagtaaggt 17116402  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 22912333 - 22912411
Alignment:
Q  32 acaaaaacattctaactaggtagacacctatctgtaacctctgtccgctaccacctactctatatatattattaaaaaa 110  Q
    |||||||||| | |||||||| |||||||| ||| ||||||| ||  |||||||||||| |||||| ||||||||||||    
T  22912333 acaaaaacatcccaactaggttgacacctaactgaaacctctatcatctaccacctactttatatacattattaaaaaa 22912411  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 154
Target Start/End: Original strand, 17745477 - 17745542
Alignment:
Q  91 ctatatatattattaaaaaaggagaaaatattatgtataagagaggg--ctaggccaaaatcctca 154  Q
    |||||||||||||||||||||||||||||| |||||| ||||| |||  ||||||||||| |||||    
T  17745477 ctatatatattattaaaaaaggagaaaataatatgtacaagaggggggactaggccaaaaccctca 17745542  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 167
Target Start/End: Original strand, 19473722 - 19473815
Alignment:
Q  79 ctaccacctactctatatatattatt---aaaaaaggagaaaatattatgtataaga--gagggctaggccaaaatcctcagagaaaataagcg 167  Q
    ||||||| ||||||||| ||||||||   |||||| ||||||||| |||||| ||||  | |||||||||||| ||||||||| | ||||||||    
T  19473722 ctaccacatactctataaatattattaaaaaaaaaagagaaaataatatgtacaagagggggggctaggccaagatcctcagaaagaataagcg 19473815  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 155
Target Start/End: Complemental strand, 26652075 - 26651998
Alignment:
Q  79 ctaccacctactctatatatattattaaaaaaggagaaaatattatgtataagagaggg--ctaggccaaaatcctcag 155  Q
    |||||||||| |||||||||||||| |||||| ||||||||| |||||| ||||| |||  ||||| ||||| ||||||    
T  26652075 ctaccacctattctatatatattatcaaaaaa-gagaaaataatatgtacaagaggggggactagggcaaaaccctcag 26651998  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 55665 - 55693
Alignment:
Q  93 atatatattattaaaaaaggagaaaatat 121  Q
    |||||||||||||||||||||||||||||    
T  55665 atatatattattaaaaaaggagaaaatat 55693  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 29845314 - 29845282
Alignment:
Q  79 ctaccacctactctatatatattattaaaaaag 111  Q
    ||||||||||||| |||||||||||||||||||    
T  29845314 ctaccacctactcaatatatattattaaaaaag 29845282  T

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