View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_62 (Length: 294)
Name: NF1720_low_62
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 89 - 281
Target Start/End: Original strand, 42685501 - 42685693
Alignment:
| Q |
89 |
gttttcttctttcttgacatcaatctttcgtctcctaagttacatttcaccagcattcaaactacccaacaatggtatcaaggaaatagattataaacnn |
188 |
Q |
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| T |
42685501 |
gttttcttctttcttgacatcaatctttcgtctcctaagttacatttcaccagcattcaaactagccaacaatggtatcaaggaaatagattataaacaa |
42685600 |
T |
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| Q |
189 |
nnnnnncaatacgaagatagtgaattcaacaatatcttgaccggagtccttagcttattagctctaatggtttccattccagtattgaatttg |
281 |
Q |
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| T |
42685601 |
aaaaaacaatacgaagatagtgaattcaacaatatcttgaccggagtccttagcttattagctctaatggtttccattccagtattgaatttg |
42685693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 42685423 - 42685460
Alignment:
| Q |
11 |
cataggtgctttctttcaaaattggaattacctatcct |
48 |
Q |
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| T |
42685423 |
cataggtgctttctttcaaaattggaattacctatcct |
42685460 |
T |
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