View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_65 (Length: 289)
Name: NF1720_low_65
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 39903803 - 39903534
Alignment:
| Q |
1 |
acagtaaagggtgactatcctatacccaaacattgaatgggacaagccagccagttttaaacccctaacacatgaactgcatttcctgccttcagccacc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39903803 |
acagtaaagggtgactatcctatacccaaacattgaatgggacaagccaaccagttttaaacccctaacacatgaactgcatttcctgccttcagccacc |
39903704 |
T |
|
| Q |
101 |
agtaagaattaatctgaattttctcaagcgactgatgaatattagattcggtgttattgaactgcctattattatgttcagtccataacacccacccaca |
200 |
Q |
| |
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||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39903703 |
agtaagaattaatttgaattttctcaagcaactgatgaatattagattcggtgttattgaactgcctattattatgttcagtccataacacccacacaca |
39903604 |
T |
|
| Q |
201 |
taagagccacaatagatgcataaaggattgtttagttgttgtcccacctgtcaaataagtaaattgaaga |
270 |
Q |
| |
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|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
39903603 |
taagagccacaatagatgcataaatgatcgtttagttgttgtcccacctgtcaaataagtaaactgaaga |
39903534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 260
Target Start/End: Original strand, 8901541 - 8901654
Alignment:
| Q |
147 |
ttcggtgttattgaactgcctattattatgttcagtccataacacccacccacataagagccacaatagatgcataaaggattgtttagttgttgtccca |
246 |
Q |
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||||||||| || ||||| ||||||||| | | ||||| ||||||||| || |||| | |||||| || ||||||||||| ||| | | | ||| |||| |
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| T |
8901541 |
ttcggtgttgttaaactgactattattacggacggtccacaacacccacacatataataaccacaaaagttgcataaaggagtgtcttgattttgcccca |
8901640 |
T |
|
| Q |
247 |
cctgtcaaataagt |
260 |
Q |
| |
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|||| ||||||||| |
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| T |
8901641 |
cctgccaaataagt |
8901654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 32482725 - 32482584
Alignment:
| Q |
68 |
acacatgaactgcatttcctgccttcagccaccagtaagaattaatctgaattttctcaagcgactgatgaatattagattcggtgttattgaactgcct |
167 |
Q |
| |
|
||||||||||||||||| |||| |||| |||||||||||||||||| |||| || | | | |||||||| |||| | |||||||||| |||||||| |
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| T |
32482725 |
acacatgaactgcatttgctgctttcaaccaccagtaagaattaatttgaacctttttgaacaactgatgagtattcattacggtgttattaaactgcct |
32482626 |
T |
|
| Q |
168 |
attattatgttcagtccataacacccacccacataagagcca |
209 |
Q |
| |
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||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
32482625 |
attattacgttcagtccataacacccacacacataagagcca |
32482584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 21663313 - 21663108
Alignment:
| Q |
19 |
cctatacccaaacattgaatgggacaagccagccagttttaaacccctaacacatgaactgcatttcctgccttcagccaccagtaagaattaatctgaa |
118 |
Q |
| |
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|||||||||||||| |||| || ||||| || ||||| | ||||||||| ||| | ||||||| |||| |||| |||||| ||||||| ||| |||| |
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| T |
21663313 |
cctatacccaaacaaagaatagggcaagctagtcagttatgaacccctaatacaaaagttgcatttgctgcattcatccaccaataagaatgaatttgaa |
21663214 |
T |
|
| Q |
119 |
ttttctcaagcgactgatgaatattagattcggtgttattgaactgcctattattatgttcagtccataacacccacccacataagagccacaatagatg |
218 |
Q |
| |
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|| || | |||||||||| | || ||||||||| ||||| ||||||||| |||||||||||||||||||| |||||||||||||||| || || |
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| T |
21663213 |
ccttttcgaatatctgatgaatagaaattttggtgttattaaactgtctattattacgttcagtccataacacccacacacataagagccacaaaagttg |
21663114 |
T |
|
| Q |
219 |
cataaa |
224 |
Q |
| |
|
|||||| |
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|
| T |
21663113 |
cataaa |
21663108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 45870789 - 45870988
Alignment:
| Q |
40 |
ggacaagccagccagttttaaacccctaacacatgaactgcatttcctgccttcagccaccagtaagaattaatctgaattttctcaagcgactgatgaa |
139 |
Q |
| |
|
|||||||| ||||| || | || |||||| |||||||| ||||| |||||||| ||||||| |||||| ||| |||| || || || ||||||||| |
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|
| T |
45870789 |
ggacaagcgagccaattatgaatccctaaaacatgaacaacatttgctgccttccgccaccaaaaagaatgaatttgaaccttttctagtaactgatgaa |
45870888 |
T |
|
| Q |
140 |
tattagattcggtgttattgaactgcctattattatgttcagtccataacacccacccacataagagccacaatagatgcataaaggattgtttagttgt |
239 |
Q |
| |
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|| ||| ||| |||||||| ||| | ||||||||| || ||| ||||||| |||| |||| |||||||||| || ||||||||||| |||||||||| |
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|
| T |
45870889 |
tagtagtttcagtgttattaaaccgtctattattacatttagtgcataacatccacacacaagagagccacaaaagctgcataaaggagcgtttagttgt |
45870988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 27941912 - 27941872
Alignment:
| Q |
154 |
ttattgaactgcctattattatgttcagtccataacaccca |
194 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||| ||||| |
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| T |
27941912 |
ttattgaacagcctattattacgttcagtccataataccca |
27941872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 67 - 212
Target Start/End: Original strand, 22713246 - 22713391
Alignment:
| Q |
67 |
aacacatgaactgcatttcctgccttcagccaccagtaagaattaatctgaattttctcaagcgactgatgaatattagattcggtgttattgaactgcc |
166 |
Q |
| |
|
|||||||||| | ||||| |||| |||| |||| | ||||||| ||| |||| || || | | ||||||||||||| |||| ||||||| ||||| | |
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|
| T |
22713246 |
aacacatgaattccatttgctgctttcaaccactaataagaatgaatttgaaccttttcgaacaactgatgaatattcatttcgatgttattaaactgtc |
22713345 |
T |
|
| Q |
167 |
tattattatgttcagtccataacacccacccacataagagccacaa |
212 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||| |
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|
| T |
22713346 |
tattattacgttcagtccataacacccacacacataagagccacaa |
22713391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 200
Target Start/End: Original strand, 22627085 - 22627223
Alignment:
| Q |
62 |
cccctaacacatgaactgcatttcctgccttcagccaccagtaagaattaatctgaattttctcaagcgactgatgaatattagattcggtgttattgaa |
161 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||||||||| ||||||| || |||| || |||| | | ||||||||| | |||| |||| ||||| |
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|
| T |
22627085 |
ccccaaacacatgaacaacatttgttgccttcagccaccaataagaatggatttgaaccttttcaaccaaatgatgaatagaattttcgatgttgttgaa |
22627184 |
T |
|
| Q |
162 |
ctgcctattattatgttcagtccataacacccacccaca |
200 |
Q |
| |
|
||| |||||||| | |||||||||||||||||| |||| |
|
|
| T |
22627185 |
ctgtttattattacgctcagtccataacacccacacaca |
22627223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 42075108 - 42075051
Alignment:
| Q |
61 |
acccctaacacatgaactgcatttcctgccttcagccaccagtaagaattaatctgaa |
118 |
Q |
| |
|
||||| |||||||||||||| ||| |||| |||| |||||||||||||||||| |||| |
|
|
| T |
42075108 |
acccccaacacatgaactgcctttgctgctttcaaccaccagtaagaattaatttgaa |
42075051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 2075006 - 2074951
Alignment:
| Q |
147 |
ttcggtgttattgaactgcctattattatgttcagtccataacacccacccacata |
202 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||| ||||||||||||| || |||||| |
|
|
| T |
2075006 |
ttcggtgttattaaactgtctattgttatgtttagtccataacacctacacacata |
2074951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 43810532 - 43810572
Alignment:
| Q |
154 |
ttattgaactgcctattattatgttcagtccataacaccca |
194 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
43810532 |
ttattgaacaacctattattacgttcagtccataacaccca |
43810572 |
T |
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