View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_66 (Length: 288)
Name: NF1720_low_66
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_66 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 83 - 279
Target Start/End: Original strand, 37386210 - 37386407
Alignment:
| Q |
83 |
taacacgtgaatgtatcatcaatcaatattcaatactttgtaagtttaatcactaatagagttttttgaaaaggatggaaaatgaattatttaaattcat |
182 |
Q |
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| T |
37386210 |
taacacgtgaatgtatcatcaatcaatattcaatactttgtaagtttaatcactaatagagttttttgaaaaggatggaaaatgaattatttaaattcat |
37386309 |
T |
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| Q |
183 |
tatgattcttgtcaatgacatgataaatgttggtaccaagatcaaca-ccccaagcagcatactgctcataaagggatctcaaaaaagctctctctgc |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37386310 |
tatgattcttgtcaatgacatgataaatgttggtaccaagatcaacacccccaagcagcatactgctcataaagggatctcaaaaaagctctccctgc |
37386407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 37375387 - 37375319
Alignment:
| Q |
215 |
gtaccaagatcaacaccccaagcagcatactgctcataaagggatctcaaaaaagctctctctgctcct |
283 |
Q |
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| T |
37375387 |
gtaccaagatcaacaccccaagcagcatactgctcatgaagagatctcaaaaaagctctccctgctcct |
37375319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 37386083 - 37386133
Alignment:
| Q |
17 |
atgagtttaggatactttccttttaatagatacgatctctactttcactag |
67 |
Q |
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| T |
37386083 |
atgagtttaggatactttccttttaatagatacgatctctactttcactag |
37386133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 37360570 - 37360518
Alignment:
| Q |
215 |
gtaccaagatcaacaccccaagcagcatactgctcataaagggatctcaaaaa |
267 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37360570 |
gtaccaagatcaacaccccaagcagcatactgctcatgaagggatctcaaaaa |
37360518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 37367492 - 37367544
Alignment:
| Q |
215 |
gtaccaagatcaacaccccaagcagcatactgctcataaagggatctcaaaaa |
267 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37367492 |
gtaccaagatcaacaccccaagcagcatactgctcatgaagggatctcaaaaa |
37367544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 37382726 - 37382658
Alignment:
| Q |
215 |
gtaccaagatcaacaccccaagcagcatactgctcataaagggatctcaaaaaagctctctctgctcct |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| |
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| T |
37382726 |
gtaccaagatcaacaccccaagcagcatactgtgcataaagagatctcaaaaaagctcttcctgctcct |
37382658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 41229852 - 41229919
Alignment:
| Q |
212 |
ttggtaccaagatcaacaccccaagcagcatactgctcataaagggatctcaaaaaagctctctctgc |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
41229852 |
ttggtaccaagatcaacaccccaagcagcatactgctcataaagggatctcaaaaacgctctccctgc |
41229919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 41229742 - 41229815
Alignment:
| Q |
112 |
tcaatactttgtaagtttaatcactaatagagttttttgaaaaggatggaaaatgaattatttaaattcattatgat |
188 |
Q |
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| T |
41229742 |
tcaatactttgtaagtttaatcacttacagag--gtttgaaaataatgg-aaatcaattatttaaattcatcatgat |
41229815 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 39243921 - 39243869
Alignment:
| Q |
215 |
gtaccaagatcaacaccccaagcagcatactgctcataaagggatctcaaaaa |
267 |
Q |
| |
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||||||| |||||||||||| ||||||||||| |||||||||| |||||||| |
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| T |
39243921 |
gtaccaaaatcaacaccccattcagcatactgcacataaagggacctcaaaaa |
39243869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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