View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1720_low_67 (Length: 285)

Name: NF1720_low_67
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1720_low_67
NF1720_low_67
[»] chr4 (37 HSPs)
chr4 (105-266)||(1229486-1229647)
chr4 (42-85)||(42915106-42915149)
chr4 (35-85)||(36408091-36408141)
chr4 (35-85)||(36413214-36413264)
chr4 (35-84)||(31275280-31275329)
chr4 (36-83)||(5234360-5234407)
chr4 (39-85)||(47998731-47998777)
chr4 (42-86)||(4896386-4896430)
chr4 (35-83)||(38952823-38952871)
chr4 (45-87)||(31240793-31240835)
chr4 (35-85)||(46173671-46173721)
chr4 (42-84)||(51389457-51389499)
chr4 (42-83)||(28480427-28480468)
chr4 (42-83)||(28481301-28481342)
chr4 (42-83)||(28482176-28482217)
chr4 (35-84)||(30778152-30778201)
chr4 (36-84)||(30973717-30973766)
chr4 (46-87)||(48372110-48372151)
chr4 (42-83)||(51296066-51296107)
chr4 (39-83)||(30042271-30042315)
chr4 (45-85)||(36792477-36792517)
chr4 (42-85)||(1033289-1033332)
chr4 (45-84)||(22257084-22257123)
chr4 (39-86)||(25523082-25523129)
chr4 (42-85)||(31658060-31658103)
chr4 (38-85)||(32408356-32408403)
chr4 (35-85)||(55927118-55927168)
chr4 (36-85)||(525858-525907)
chr4 (46-83)||(1580171-1580208)
chr4 (42-83)||(15596537-15596578)
chr4 (36-77)||(39440490-39440531)
chr4 (45-85)||(4577708-4577748)
chr4 (42-86)||(11063975-11064019)
chr4 (42-90)||(27964980-27965028)
chr4 (39-83)||(37249047-37249091)
chr4 (45-85)||(39241189-39241229)
chr4 (45-85)||(51039004-51039044)
[»] chr5 (25 HSPs)
chr5 (36-82)||(12349920-12349966)
chr5 (42-85)||(2117527-2117570)
chr5 (45-84)||(11306840-11306879)
chr5 (35-85)||(33567126-33567176)
chr5 (42-85)||(9403654-9403697)
chr5 (45-83)||(10232644-10232682)
chr5 (45-82)||(125236-125273)
chr5 (42-83)||(39595415-39595456)
chr5 (46-86)||(5130263-5130303)
chr5 (36-72)||(32536950-32536986)
chr5 (42-85)||(20719902-20719945)
chr5 (36-83)||(42699184-42699231)
chr5 (45-83)||(3141640-3141678)
chr5 (45-87)||(11767875-11767917)
chr5 (45-83)||(12661835-12661873)
chr5 (45-86)||(37821026-37821068)
chr5 (42-76)||(43482506-43482540)
chr5 (42-83)||(9714024-9714065)
chr5 (42-83)||(24431507-24431548)
chr5 (45-94)||(40223663-40223712)
chr5 (36-85)||(42532252-42532301)
chr5 (49-85)||(6515326-6515362)
chr5 (36-84)||(17990349-17990397)
chr5 (45-85)||(19127268-19127308)
chr5 (48-84)||(35124829-35124865)
[»] chr1 (21 HSPs)
chr1 (42-85)||(49453618-49453661)
chr1 (36-79)||(27687415-27687458)
chr1 (42-83)||(2362510-2362551)
chr1 (42-86)||(28716284-28716328)
chr1 (36-79)||(12034357-12034400)
chr1 (36-87)||(51702997-51703048)
chr1 (36-85)||(37843322-37843371)
chr1 (36-84)||(49425870-49425919)
chr1 (45-85)||(48872838-48872878)
chr1 (35-85)||(14002628-14002679)
chr1 (35-86)||(31427843-31427894)
chr1 (42-73)||(36418220-36418251)
chr1 (45-83)||(4638069-4638107)
chr1 (45-83)||(31480023-31480061)
chr1 (42-84)||(51571567-51571609)
chr1 (42-83)||(33676042-33676083)
chr1 (42-83)||(40610370-40610411)
chr1 (36-77)||(40612245-40612286)
chr1 (45-85)||(15061990-15062030)
chr1 (36-87)||(18959139-18959191)
chr1 (36-80)||(50141827-50141871)
[»] scaffold0115 (1 HSPs)
scaffold0115 (42-87)||(15074-15119)
[»] scaffold0036 (1 HSPs)
scaffold0036 (46-87)||(18148-18189)
[»] chr7 (26 HSPs)
chr7 (35-84)||(6353863-6353912)
chr7 (42-83)||(12142025-12142066)
chr7 (35-87)||(37351875-37351927)
chr7 (42-85)||(8792487-8792530)
chr7 (35-78)||(32933681-32933724)
chr7 (42-85)||(48866817-48866860)
chr7 (44-82)||(21839023-21839061)
chr7 (35-85)||(43445541-43445591)
chr7 (42-83)||(10591293-10591334)
chr7 (46-87)||(32428213-32428254)
chr7 (38-83)||(37856070-37856115)
chr7 (46-87)||(43657147-43657188)
chr7 (45-89)||(155864-155908)
chr7 (45-85)||(7807199-7807239)
chr7 (39-83)||(21858885-21858929)
chr7 (42-89)||(5978720-5978767)
chr7 (46-85)||(34348914-34348953)
chr7 (45-88)||(45607168-45607211)
chr7 (45-91)||(30180651-30180697)
chr7 (42-84)||(33684821-33684863)
chr7 (46-83)||(40717127-40717164)
chr7 (45-85)||(47945127-47945168)
chr7 (45-85)||(47950557-47950598)
chr7 (42-78)||(7077647-7077683)
chr7 (45-81)||(32154441-32154477)
chr7 (45-85)||(43260135-43260175)
[»] chr6 (15 HSPs)
chr6 (36-85)||(32253916-32253965)
chr6 (42-89)||(32853027-32853074)
chr6 (39-85)||(2241713-2241759)
chr6 (42-85)||(1897827-1897870)
chr6 (46-85)||(10628425-10628464)
chr6 (46-84)||(1434564-1434602)
chr6 (42-91)||(2582803-2582852)
chr6 (36-88)||(17457570-17457622)
chr6 (40-84)||(28004967-28005011)
chr6 (45-88)||(10521267-10521310)
chr6 (36-83)||(30733144-30733191)
chr6 (36-86)||(1156718-1156768)
chr6 (45-91)||(26378266-26378312)
chr6 (36-85)||(30714808-30714857)
chr6 (45-85)||(9954693-9954733)
[»] chr3 (26 HSPs)
chr3 (42-83)||(29706044-29706085)
chr3 (36-84)||(7231894-7231942)
chr3 (46-84)||(46953094-46953132)
chr3 (45-86)||(32687845-32687886)
chr3 (45-85)||(108574-108614)
chr3 (36-80)||(44695147-44695191)
chr3 (46-83)||(32457642-32457679)
chr3 (36-85)||(37303518-37303567)
chr3 (46-87)||(46473273-46473314)
chr3 (36-85)||(49196831-49196880)
chr3 (45-86)||(51464152-51464193)
chr3 (42-86)||(20380775-20380819)
chr3 (45-85)||(31997947-31997987)
chr3 (35-83)||(41957647-41957695)
chr3 (45-84)||(6126599-6126638)
chr3 (42-85)||(11173591-11173634)
chr3 (45-84)||(43169642-43169681)
chr3 (50-85)||(55344182-55344217)
chr3 (45-83)||(34733183-34733221)
chr3 (42-84)||(47849811-47849853)
chr3 (42-83)||(28300535-28300576)
chr3 (42-89)||(2935393-2935441)
chr3 (47-87)||(44937364-44937404)
chr3 (36-79)||(51343412-51343456)
chr3 (45-85)||(51406257-51406297)
chr3 (45-85)||(51650501-51650541)
[»] chr8 (21 HSPs)
chr8 (39-87)||(40413248-40413296)
chr8 (42-84)||(21273598-21273640)
chr8 (42-83)||(9046960-9047001)
chr8 (42-86)||(43403925-43403969)
chr8 (44-83)||(7678875-7678914)
chr8 (42-84)||(1179517-1179559)
chr8 (42-80)||(44672125-44672163)
chr8 (36-85)||(295681-295730)
chr8 (42-83)||(5359479-5359520)
chr8 (36-80)||(14708075-14708119)
chr8 (45-85)||(30925541-30925581)
chr8 (42-85)||(23258173-23258216)
chr8 (42-85)||(26294317-26294360)
chr8 (42-85)||(26307574-26307617)
chr8 (45-84)||(45101540-45101579)
chr8 (42-80)||(18538519-18538557)
chr8 (50-84)||(40842073-40842107)
chr8 (45-87)||(42543365-42543407)
chr8 (46-82)||(20473924-20473960)
chr8 (45-85)||(32175100-32175140)
chr8 (45-85)||(34474095-34474135)
[»] chr2 (17 HSPs)
chr2 (42-85)||(3091882-3091925)
chr2 (42-85)||(36133115-36133158)
chr2 (42-84)||(11164264-11164306)
chr2 (42-85)||(13711202-13711245)
chr2 (42-80)||(12600189-12600227)
chr2 (35-84)||(12962520-12962569)
chr2 (35-84)||(23042353-23042402)
chr2 (36-77)||(44287464-44287505)
chr2 (41-79)||(25801704-25801742)
chr2 (45-83)||(34138925-34138963)
chr2 (36-77)||(3838904-3838945)
chr2 (47-84)||(19913931-19913968)
chr2 (45-86)||(26321583-26321624)
chr2 (42-83)||(29795577-29795618)
chr2 (35-83)||(5455342-5455390)
chr2 (45-84)||(35518419-35518459)
chr2 (39-83)||(42283139-42283183)
[»] scaffold0018 (1 HSPs)
scaffold0018 (46-85)||(36147-36186)
[»] scaffold0057 (1 HSPs)
scaffold0057 (42-83)||(39020-39061)
[»] scaffold0508 (1 HSPs)
scaffold0508 (45-85)||(11423-11463)
[»] scaffold0449 (1 HSPs)
scaffold0449 (46-85)||(7976-8015)
[»] scaffold0060 (1 HSPs)
scaffold0060 (45-83)||(6961-6999)
[»] scaffold0148 (1 HSPs)
scaffold0148 (39-83)||(9589-9633)
[»] scaffold0001 (1 HSPs)
scaffold0001 (46-86)||(396007-396047)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 105 - 266
Target Start/End: Complemental strand, 1229647 - 1229486
Alignment:
Q  105 tgatgatatatgaaggataagagaatttacttgaaaattgagaattgtgtcttggccccagtacttcaatgctgccaagtcataggcacgtgctgcagct 204  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1229647 tgatgatatgtgaaggataagagaatttacttgaaaattgagaattgtgtcttggccccagtacttcaatgctgccaagtcataggcacgtgctgcagct 1229548  T
Q  205 tcttcatcatcatatgctcctaacaaaacaaacccaactttgcagtcattaaatacttccat 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1229547 tcttcatcatcatatgctcctaacaaaacaaacccaactttgcagtcattaaatacttccat 1229486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 42915149 - 42915106
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42915149 tcacaaaagttgtatcaaatagttgttcaaatatcactactctt 42915106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 36408141 - 36408091
Alignment:
Q  35 gaaattatcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  36408141 gaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctt 36408091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 36413264 - 36413214
Alignment:
Q  35 gaaattatcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  36413264 gaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctt 36413214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 31275280 - 31275329
Alignment:
Q  35 gaaattatcacaaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  31275280 gaaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactct 31275329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 5234407 - 5234360
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  5234407 aaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactc 5234360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 47998731 - 47998777
Alignment:
Q  39 ttatcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||    
T  47998731 ttatcacaaaagttgtatcaaatgattgttcaaatatcactactctt 47998777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 4896430 - 4896386
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctta 86  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||    
T  4896430 tcacaaaagttgtttcaaatagatgttcaaatatcactactctta 4896386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 38952823 - 38952871
Alignment:
Q  35 gaaattatcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    ||||||||||||||| |||||||||||| ||||| ||||||||||||||    
T  38952823 gaaattatcacaaaaattgtatcaaataattgtttaaatatcactactc 38952871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 31240793 - 31240835
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactcttaa 87  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  31240793 caaaagttgtatgaaatggttgttcaaatatcactactcttaa 31240835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 46173671 - 46173721
Alignment:
Q  35 gaaattatcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||| |||||||||||||||||||| ||| ||||||||||| |||||||    
T  46173671 gaaattgtcacaaaagttgtatcaaatggttattcaaatatcattactctt 46173721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 51389457 - 51389499
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    |||||||||||||||||||| ||||||||||||||||| ||||    
T  51389457 tcacaaaagttgtatcaaatggttgttcaaatatcactgctct 51389499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 28480468 - 28480427
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||||| |||||| ||||||||||||||||||||||||||||    
T  28480468 tcacaatagttgtctcaaatagttgttcaaatatcactactc 28480427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 28481342 - 28481301
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||||| |||||| ||||||||||||||||||||||||||||    
T  28481342 tcacaatagttgtctcaaatagttgttcaaatatcactactc 28481301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 28482217 - 28482176
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||||| |||||| ||||||||||||||||||||||||||||    
T  28482217 tcacaatagttgtctcaaatagttgttcaaatatcactactc 28482176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 30778201 - 30778152
Alignment:
Q  35 gaaattatcacaaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    |||||| ||| ||||||| |||||||||||||||||||||||| ||||||    
T  30778201 gaaattgtcataaaagttatatcaaatagttgttcaaatatcattactct 30778152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 30973717 - 30973766
Alignment:
Q  36 aaattatcacaaaag-ttgtatcaaatagttgttcaaatatcactactct 84  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||||||    
T  30973717 aaattatcacaaaaaattgtatgaaatagttgttcaaatatcactactct 30973766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 48372151 - 48372110
Alignment:
Q  46 aaaagttgtatcaaatagttgttcaaatatcactactcttaa 87  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  48372151 aaaaattgtatgaaatagttgttcaaatatcactactcttaa 48372110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 51296107 - 51296066
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  51296107 tcacaaaagttgtttcaaatagatgttcaaatatcactactc 51296066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 30042271 - 30042315
Alignment:
Q  39 ttatcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||||| ||||||||||| |||||||||||||||||||| |||||    
T  30042271 ttatcataaaagttgtatgaaatagttgttcaaatatcattactc 30042315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 36792477 - 36792517
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  36792477 caaaagttgtatgaaatggttgttcaaatatcactactctt 36792517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 1033289 - 1033332
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||||||||||| | |||| |||||||||||||||||||||||    
T  1033289 tcacaaaagttgtttaaaatggttgttcaaatatcactactctt 1033332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 22257123 - 22257084
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  22257123 caaaagttgtatgaaatggttgttcaaatatcactactct 22257084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 25523129 - 25523082
Alignment:
Q  39 ttatcacaaaagttgtatcaaatagttgttcaaatatcactactctta 86  Q
    |||||||||||||||| ||| || |||||||||||| |||||||||||    
T  25523129 ttatcacaaaagttgtctcatatggttgttcaaataacactactctta 25523082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 31658060 - 31658103
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||||||| |||||||||| |||||||||||||| ||||||||    
T  31658060 tcacaaaagctgtatcaaatggttgttcaaatatcgctactctt 31658103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 32408403 - 32408356
Alignment:
Q  38 attatcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||||||||||||| | |||||| | |||||||||||||||||||||    
T  32408403 attatcacaaaagttatttcaaattgatgttcaaatatcactactctt 32408356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 55927118 - 55927168
Alignment:
Q  35 gaaattatcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||| |||||||| |||| |||||| | |||||||||||||||||||||    
T  55927118 gaaattgtcacaaaaattgtctcaaatggatgttcaaatatcactactctt 55927168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 525858 - 525907
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||| ||||||||||||| ||||||| |||||||| |||||| ||||||    
T  525858 aaattgtcacaaaagttgtctcaaataattgttcaattatcacgactctt 525907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 1580208 - 1580171
Alignment:
Q  46 aaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  1580208 aaaagttgtatgaaatggttgttcaaatatcactactc 1580171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 15596537 - 15596578
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    ||||||||||||| | |||| |||||||||||||||||||||    
T  15596537 tcacaaaagttgtttaaaatggttgttcaaatatcactactc 15596578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 39440531 - 39440490
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatca 77  Q
    ||||||||||||||||||||  |||| |||||||||||||||    
T  39440531 aaattatcacaaaagttgtaaaaaatggttgttcaaatatca 39440490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 4577708 - 4577748
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||||||||| |||| |||||||||||||||| |||||||    
T  4577708 caaaagttgtagcaaaaagttgttcaaatatcattactctt 4577748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 11064019 - 11063975
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctta 86  Q
    |||| |||||||| | |||| ||||||||||||||||||||||||    
T  11064019 tcaccaaagttgtcttaaatggttgttcaaatatcactactctta 11063975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 27965028 - 27964980
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactcttaatat 90  Q
    |||||||||| |||  |||||||||||||||||||| | ||||||||||    
T  27965028 tcacaaaagtcgtaaaaaatagttgttcaaatatcatttctcttaatat 27964980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 37249047 - 37249091
Alignment:
Q  39 ttatcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    ||||| |||||||||| |||||||| ||||||||||||| |||||    
T  37249047 ttatctcaaaagttgtttcaaatagatgttcaaatatcattactc 37249091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 39241229 - 39241189
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||||| |||||| |||||| ||||||||||||||||    
T  39241229 caaaagttgtctcaaatggttgttaaaatatcactactctt 39241189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 51039044 - 51039004
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||||||| |||| |||||| ||||||||||||||||    
T  51039044 caaaagttgtatgaaatggttgtttaaatatcactactctt 51039004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 12349920 - 12349966
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcactact 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  12349920 aaattatcacaaaagttgtatcaaatagttgttcaaatatcactact 12349966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 2117570 - 2117527
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2117570 tcacaaaagttgtatcaaatagttgttcaaatatcactactctt 2117527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 11306840 - 11306879
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  11306840 caaaagttgtatcaaatagttgttcaaatatcactactct 11306879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 33567176 - 33567126
Alignment:
Q  35 gaaattatcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  33567176 gaaattgtcacaaaagttgtatcaaatggttgttcatatatcactactctt 33567126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 9403654 - 9403697
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||||||||||||||| |||||| ||||||||||||||||    
T  9403654 tcacaaaagttgtatcaaatggttgtttaaatatcactactctt 9403697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 10232644 - 10232682
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  10232644 caaaagttgtataaaatagttgttcaaatatcactactc 10232682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 125236 - 125273
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactact 82  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  125236 caaaagttgtatcaaatggttgttcaaatatcactact 125273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 39595415 - 39595456
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||||||||||||||||||| ||||||||||||||| |||||    
T  39595415 tcacaaaagttgtatcaaatggttgttcaaatatcattactc 39595456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 5130303 - 5130263
Alignment:
Q  46 aaaagttgtatcaaatagttgttcaaatatcactactctta 86  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  5130303 aaaaattgtatgaaatagttgttcaaatatcactactctta 5130263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 32536950 - 32536986
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaa 72  Q
    ||||||||||||||||||| |||||||||||||||||    
T  32536950 aaattatcacaaaagttgtctcaaatagttgttcaaa 32536986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 20719945 - 20719902
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||||||||||| |||||| | |||||||||||||||||||||    
T  20719945 tcacaaaagttgtctcaaatggatgttcaaatatcactactctt 20719902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 42699184 - 42699231
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    ||||||| | ||||||||||| |||||||||||||||||||| |||||    
T  42699184 aaattattataaaagttgtatgaaatagttgttcaaatatcattactc 42699231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 3141640 - 3141678
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  3141640 caaaagttgtatgaaatggttgttcaaatatcactactc 3141678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 11767917 - 11767875
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactcttaa 87  Q
    |||||||||| | |||| |||||||||||||||||||||||||    
T  11767917 caaaagttgtctaaaatggttgttcaaatatcactactcttaa 11767875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 12661873 - 12661835
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||||||||||| ||||||||||||||||||||| ||||    
T  12661873 caaaagttgtatgaaatagttgttcaaatatcaccactc 12661835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 37821068 - 37821026
Alignment:
Q  45 caaaagttgtatcaaa-tagttgttcaaatatcactactctta 86  Q
    ||||||||||| |||| ||||||||||||||||||||||||||    
T  37821068 caaaagttgtaccaaaatagttgttcaaatatcactactctta 37821026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 43482506 - 43482540
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatc 76  Q
    |||||||| ||||||||||||||||||||||||||    
T  43482506 tcacaaaaattgtatcaaatagttgttcaaatatc 43482540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 9714065 - 9714024
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||||| |||||||||| || |||||||||||||||||||||    
T  9714065 tcacaagagttgtatcatatggttgttcaaatatcactactc 9714024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 24431548 - 24431507
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||||| |||||| |||||| |||||||||||||||||||||    
T  24431548 tcacaatagttgtctcaaatggttgttcaaatatcactactc 24431507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 40223712 - 40223663
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactcttaatatattg 94  Q
    ||||| |||||| |||| ||||||||||||||||||||| ||||| ||||    
T  40223712 caaaaattgtatgaaatggttgttcaaatatcactactcataataaattg 40223663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 42532252 - 42532301
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||| |||||||| || ||| ||||||||||||||||||||||| ||||    
T  42532252 aaattgtcacaaaaattatatgaaatagttgttcaaatatcactaatctt 42532301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 6515362 - 6515326
Alignment:
Q  49 agttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||| |||| |||||||||||||||||||||||    
T  6515362 agttgtatgaaatggttgttcaaatatcactactctt 6515326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 17990349 - 17990397
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    ||||| ||||||||||||| |||||  |||||| |||||||||||||||    
T  17990349 aaattgtcacaaaagttgtctcaaacggttgtttaaatatcactactct 17990397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 19127268 - 19127308
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||||| | |||| |||||||||||||||||||||||    
T  19127268 caaaagttgtttaaaatggttgttcaaatatcactactctt 19127308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 35124829 - 35124865
Alignment:
Q  48 aagttgtatcaaatagttgttcaaatatcactactct 84  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  35124829 aagttgtctcatatagttgttcaaatatcactactct 35124865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 49453618 - 49453661
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  49453618 tcacaaaagttgtatcaaatagttgttcaaatatcactactctt 49453661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 27687458 - 27687415
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcact 79  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  27687458 aaattatcacaaaagttgtatcaaacagttgttcaaatatcact 27687415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 2362510 - 2362551
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  2362510 tcacaaaaattgtatcaaatagttgttcaaatatcactactc 2362551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 28716284 - 28716328
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctta 86  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||    
T  28716284 tcacaaaagttgtctcaaatggttgttcaaatatcactactctta 28716328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 12034357 - 12034400
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcact 79  Q
    ||||||||||||||||||||||||||||| |||||||| |||||    
T  12034357 aaattatcacaaaagttgtatcaaatagtcgttcaaatgtcact 12034400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 51703048 - 51702997
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcactactcttaa 87  Q
    ||||||||||||||||||| | |||| |||||||||||||||||||| ||||    
T  51703048 aaattatcacaaaagttgtctgaaatggttgttcaaatatcactactattaa 51702997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 37843371 - 37843322
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||| ||||| || || ||||||||||||||||||||||||||||||||    
T  37843371 aaattgtcacacaaattatatcaaatagttgttcaaatatcactactctt 37843322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 49425870 - 49425919
Alignment:
Q  36 aaattatcac-aaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    |||||||||| ||||||||||| |||| ||||||||||||||||||||||    
T  49425870 aaattatcaccaaaagttgtatgaaatggttgttcaaatatcactactct 49425919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 48872878 - 48872838
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  48872878 caaaagttgtatgaaatggttgttcaaatatcactactctt 48872838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 14002679 - 14002628
Alignment:
Q  35 gaaattatcacaaaagttgt-atcaaatagttgttcaaatatcactactctt 85  Q
    |||||| ||| ||||||||| | |||||||||||||||||||||||||||||    
T  14002679 gaaattgtcataaaagttgttagcaaatagttgttcaaatatcactactctt 14002628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 31427894 - 31427843
Alignment:
Q  35 gaaattatcacaaaagttgtatcaaatagttgttcaaatatcactactctta 86  Q
    |||||| ||| ||||||||| | ||||| |||||||||||||||||||||||    
T  31427894 gaaattgtcataaaagttgtttaaaataattgttcaaatatcactactctta 31427843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 73
Target Start/End: Original strand, 36418220 - 36418251
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaat 73  Q
    ||||||||||||||||||||||||||||||||    
T  36418220 tcacaaaagttgtatcaaatagttgttcaaat 36418251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 4638069 - 4638107
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  4638069 caaaagttgtatgaaatggttgttcaaatatcactactc 4638107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 31480061 - 31480023
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  31480061 caaaaattgtatgaaatagttgttcaaatatcactactc 31480023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 51571567 - 51571609
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    ||||||||||||||| |||| |||||||||||||||| |||||    
T  51571567 tcacaaaagttgtattaaatggttgttcaaatatcacaactct 51571609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 33676042 - 33676083
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    ||||||||||| ||| |||||||||||||||||||| |||||    
T  33676042 tcacaaaagttttattaaatagttgttcaaatatcaatactc 33676083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 40610370 - 40610411
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    ||||||||||||| |||||| | |||||||||||||||||||    
T  40610370 tcacaaaagttgtctcaaatggatgttcaaatatcactactc 40610411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 40612245 - 40612286
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatca 77  Q
    ||||||||| |||| |||||| ||||||||||||||||||||    
T  40612245 aaattatcataaaaattgtatgaaatagttgttcaaatatca 40612286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 15061990 - 15062030
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||| ||| |||| |||||||||||||||||||||||    
T  15061990 caaaagttatatgaaatggttgttcaaatatcactactctt 15062030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 18959139 - 18959191
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttc-aaatatcactactcttaa 87  Q
    ||||| || ||||| ||||||||||| ||||||| ||||||||||||||||||    
T  18959139 aaattgtcgcaaaaattgtatcaaatggttgttcaaaatatcactactcttaa 18959191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 50141871 - 50141827
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcacta 80  Q
    ||||| ||||||||||||| ||| ||||||||||||||| |||||    
T  50141871 aaattgtcacaaaagttgtctcatatagttgttcaaataacacta 50141827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 15119 - 15074
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactcttaa 87  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  15119 tcacaaaagttgtaccaaatagttgttcaaatatcactactcttaa 15074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 18148 - 18189
Alignment:
Q  46 aaaagttgtatcaaatagttgttcaaatatcactactcttaa 87  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  18148 aaaagttgtatcaaatagttgttcaaatatcactactcttaa 18189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 6353863 - 6353912
Alignment:
Q  35 gaaattatcacaaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  6353863 gaaattgtcacaaaagttgtatcaaatagtttttcaaatatcactactct 6353912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 12142025 - 12142066
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  12142025 tcacaaaagttgtatcaaatggttgttcaaatatcactactc 12142066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 37351927 - 37351875
Alignment:
Q  35 gaaattatcacaaaagttgtatcaaatagttgttcaaatatcactactcttaa 87  Q
    |||||| ||||||||||| ||||||||  ||||||||||||||||||||||||    
T  37351927 gaaattgtcacaaaagttatatcaaatgattgttcaaatatcactactcttaa 37351875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 8792530 - 8792487
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||||||||||||||| ||||||||||||||| |||||||    
T  8792530 tcacaaaagttgtatcaaatggttgttcaaatatcattactctt 8792487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 32933681 - 32933724
Alignment:
Q  35 gaaattatcacaaaagttgtatcaaatagttgttcaaatatcac 78  Q
    |||||| ||||||||||||||||||||| |||||||||||||||    
T  32933681 gaaattgtcacaaaagttgtatcaaataattgttcaaatatcac 32933724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 48866860 - 48866817
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||||||||||| |||||||| |||||||||||||||||||||    
T  48866860 tcacaaaagttgtttcaaatagatgttcaaatatcactactctt 48866817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 21839061 - 21839023
Alignment:
Q  44 acaaaagttgtatcaaatagttgttcaaatatcactact 82  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  21839061 acaaaaattgtatcaaatagttgttcaaatatcactact 21839023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 43445541 - 43445591
Alignment:
Q  35 gaaattatcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||| |||||||| |||||||||||  ||||||||||||||||||||||    
T  43445541 gaaattgtcacaaaaattgtatcaaatgattgttcaaatatcactactctt 43445591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 10591293 - 10591334
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  10591293 tcacaaaagttgtctcaaatggttgttcaaatatcactactc 10591334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 32428213 - 32428254
Alignment:
Q  46 aaaagttgtatcaaatagttgttcaaatatcactactcttaa 87  Q
    |||||||||||||||||||||||||||||||| | |||||||    
T  32428213 aaaagttgtatcaaatagttgttcaaatatcattgctcttaa 32428254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 37856115 - 37856070
Alignment:
Q  38 attatcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    ||||||||||||||||| |||||||| |||| ||||||||||||||    
T  37856115 attatcacaaaagttgtttcaaatagatgtttaaatatcactactc 37856070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 43657147 - 43657188
Alignment:
Q  46 aaaagttgtatcaaatagttgttcaaatatcactactcttaa 87  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  43657147 aaaagttgtatgaaatggttgttcaaatatcactactcttaa 43657188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 155908 - 155864
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactcttaata 89  Q
    |||||||||| | |||| |||||||||||||||||||||||||||    
T  155908 caaaagttgtctaaaatggttgttcaaatatcactactcttaata 155864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 7807199 - 7807239
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  7807199 caaaagttgtatgaaatggttgttcaaatatcactactctt 7807239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 21858885 - 21858929
Alignment:
Q  39 ttatcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||||||||||||||| | |||| |||||||||||||||||||||    
T  21858885 ttatcacaaaagttgtttaaaatggttgttcaaatatcactactc 21858929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 5978720 - 5978767
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactcttaata 89  Q
    |||||| |||||||||| || ||||||||||||||||||||| |||||    
T  5978720 tcacaagagttgtatcatatggttgttcaaatatcactactcctaata 5978767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 34348953 - 34348914
Alignment:
Q  46 aaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  34348953 aaaagttgtatgaaatagatgttcaaatatcactactctt 34348914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 45607168 - 45607211
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactcttaat 88  Q
    |||||||| | | |||||||||||||||||||||||||||||||    
T  45607168 caaaagttatctaaaatagttgttcaaatatcactactcttaat 45607211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 30180651 - 30180697
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactcttaatata 91  Q
    ||||| |||| |||||||| |||||||||||||||||||| ||||||    
T  30180651 caaaaattgtttcaaatagatgttcaaatatcactactctaaatata 30180697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 33684821 - 33684863
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    ||||||||||||| ||| ||||||||||||||| |||||||||    
T  33684821 tcacaaaagttgtttcatatagttgttcaaataacactactct 33684863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 40717164 - 40717127
Alignment:
Q  46 aaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  40717164 aaaagttgtatgaaatggttgttcaaatatcactactc 40717127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 47945127 - 47945168
Alignment:
Q  45 caaaagttgtatcaaat-agttgttcaaatatcactactctt 85  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  47945127 caaaagttgtatcaaaagagttgttcaaatatcactactctt 47945168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 47950557 - 47950598
Alignment:
Q  45 caaaagttgtatcaaat-agttgttcaaatatcactactctt 85  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  47950557 caaaagttgtatcaaaagagttgttcaaatatcactactctt 47950598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 7077683 - 7077647
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcac 78  Q
    ||||||||||||| | |||||||||||||||||||||    
T  7077683 tcacaaaagttgtttaaaatagttgttcaaatatcac 7077647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 32154477 - 32154441
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactac 81  Q
    |||||||||||| |||| |||||||||||||||||||    
T  32154477 caaaagttgtatgaaatggttgttcaaatatcactac 32154441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 43260135 - 43260175
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||||||| |||| ||||||||||||| |||||||||    
T  43260135 caaaagttgtatgaaatggttgttcaaatatgactactctt 43260175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 32253916 - 32253965
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  32253916 aaattgtcacaaaagttgtaccaaatagttgttcaaatatcactactctt 32253965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 32853074 - 32853027
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactcttaata 89  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||    
T  32853074 tcacaaaaattgtatcaaatagttgttcaaatatcactactcataata 32853027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 2241759 - 2241713
Alignment:
Q  39 ttatcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  2241759 ttatcacaaaagttgtatcaaatggttgttcaaatatcactattctt 2241713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 1897827 - 1897870
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||||||||||| |||||||| |||||||||||||||||||||    
T  1897827 tcacaaaagttgtttcaaatagatgttcaaatatcactactctt 1897870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 10628425 - 10628464
Alignment:
Q  46 aaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  10628425 aaaagttgtatcaaatagttgttcaaatatcactcctctt 10628464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 1434602 - 1434564
Alignment:
Q  46 aaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  1434602 aaaaattgtatcaaatagttgttcaaatatcactactct 1434564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 2582803 - 2582852
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactcttaatata 91  Q
    ||||||||||||| |||||||| |||||||||||||| |||||| |||||    
T  2582803 tcacaaaagttgtttcaaatagatgttcaaatatcaccactctttatata 2582852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 17457570 - 17457622
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcactactcttaat 88  Q
    |||||| |||||||||||| |||| |  |||||||||||||||||||||||||    
T  17457570 aaattaccacaaaagttgtctcaattgattgttcaaatatcactactcttaat 17457622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 28005011 - 28004967
Alignment:
Q  40 tatcacaaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    ||||||||||||||| |||||||||| || |||||||||||||||    
T  28005011 tatcacaaaagttgtctcaaatagttatttaaatatcactactct 28004967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 10521267 - 10521310
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactcttaat 88  Q
    ||||| || ||| |||||||||||||||||||||||||||||||    
T  10521267 caaaaattatataaaatagttgttcaaatatcactactcttaat 10521310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 30733144 - 30733191
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    ||||| ||||||||||||| |||||| |||||| ||||||||||||||    
T  30733144 aaattgtcacaaaagttgtctcaaatggttgtttaaatatcactactc 30733191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 1156768 - 1156718
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcactactctta 86  Q
    ||||||||||||||||||||  |||| ||||||||||||||| | ||||||    
T  1156768 aaattatcacaaaagttgtaaaaaatggttgttcaaatatcatttctctta 1156718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 26378312 - 26378266
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactcttaatata 91  Q
    |||||||||| | |||| |||||||||||||||||||||| ||||||    
T  26378312 caaaagttgtctaaaatggttgttcaaatatcactactctaaatata 26378266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 30714808 - 30714857
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||| ||||||||||| | ||||||  ||||||||||||||||||||||    
T  30714808 aaattgtcacaaaagttatctcaaatgattgttcaaatatcactactctt 30714857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 9954693 - 9954733
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||||||| |||| ||||||||||||||||| |||||    
T  9954693 caaaagttgtattaaatggttgttcaaatatcactcctctt 9954733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 29706044 - 29706085
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  29706044 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 29706085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 7231942 - 7231894
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  7231942 aaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactct 7231894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 46953094 - 46953132
Alignment:
Q  46 aaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46953094 aaaagttgtatcaaatagttgttcaaatatcactactct 46953132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 32687886 - 32687845
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactctta 86  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  32687886 caaaagttgtatcaaatagttgttcaaatatcattactctta 32687845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 108574 - 108614
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  108574 caaaagttgtatgaaatagttgttcaaatatcactactctt 108614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 44695147 - 44695191
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcacta 80  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||    
T  44695147 aaattatcacaaaagttgtatgaaatggttgttcaaatatcacta 44695191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 32457679 - 32457642
Alignment:
Q  46 aaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||| |||||||||||||||||||||||||||||||||    
T  32457679 aaaaattgtatcaaatagttgttcaaatatcactactc 32457642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 37303518 - 37303567
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||| ||||||||||||| ||| ||||||||||||||| ||||||||||    
T  37303518 aaattgtcacaaaagttgtctcatatagttgttcaaataacactactctt 37303567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 46473273 - 46473314
Alignment:
Q  46 aaaagttgtatcaaatagttgttcaaatatcactactcttaa 87  Q
    |||||||||||||||| ||||||||||||||| |||||||||    
T  46473273 aaaagttgtatcaaatggttgttcaaatatcattactcttaa 46473314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 49196831 - 49196880
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||| ||||||||||| ||||||||| ||||||||||||||| ||||||    
T  49196831 aaattgtcacaaaagttttatcaaataattgttcaaatatcacaactctt 49196880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 51464193 - 51464152
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactctta 86  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  51464193 caaaagttgtataaaatggttgttcaaatatcactactctta 51464152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 20380819 - 20380775
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctta 86  Q
    ||||||||||||| | |||| ||||||||||||||||||||||||    
T  20380819 tcacaaaagttgtttaaaatggttgttcaaatatcactactctta 20380775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 31997947 - 31997987
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  31997947 caaaagttgtctcaaatggttgttcaaatatcactactctt 31997987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 41957647 - 41957695
Alignment:
Q  35 gaaattatcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||||||||||||||||||| | |||| |||||| ||||||||||||||    
T  41957647 gaaattatcacaaaagttgtttaaaatggttgtttaaatatcactactc 41957695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 6126599 - 6126638
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  6126599 caaaagttgtatgaaatggttgttcaaatatcactactct 6126638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 11173591 - 11173634
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||||||||||||||| ||||||||||||| | |||||||    
T  11173591 tcacaaaagttgtatcaaatggttgttcaaatattattactctt 11173634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 43169681 - 43169642
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  43169681 caaaagttgtatgaaatggttgttcaaatatcactactct 43169642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 55344217 - 55344182
Alignment:
Q  50 gttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||||| ||||||||||||||||||||||||||||    
T  55344217 gttgtatgaaatagttgttcaaatatcactactctt 55344182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 34733221 - 34733183
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  34733221 caaaagttgtttcaaatagatgttcaaatatcactactc 34733183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 47849811 - 47849853
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    |||||| |||||| |||||||| ||||||||||||||||||||    
T  47849811 tcacaagagttgtttcaaatagatgttcaaatatcactactct 47849853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 28300576 - 28300535
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||||| |||||||||| || |||||||||||||||||||||    
T  28300576 tcacaagagttgtatcatatggttgttcaaatatcactactc 28300535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 2935441 - 2935393
Alignment:
Q  42 tcacaaaagttgta-tcaaatagttgttcaaatatcactactcttaata 89  Q
    |||||||||||||| | ||| ||||||||||||| ||||||||||||||    
T  2935441 tcacaaaagttgtactaaaagagttgttcaaataacactactcttaata 2935393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 44937364 - 44937404
Alignment:
Q  47 aaagttgtatcaaatagttgttcaaatatcactactcttaa 87  Q
    |||||| ||| |||||||||||||||||||| |||||||||    
T  44937364 aaagttatatgaaatagttgttcaaatatcaatactcttaa 44937404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 51343456 - 51343412
Alignment:
Q  36 aaattatcacaaaagttgt-atcaaatagttgttcaaatatcact 79  Q
    ||||| ||||||||||||| ||||||||| |||||||||||||||    
T  51343456 aaattgtcacaaaagttgtcatcaaatagatgttcaaatatcact 51343412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 51406297 - 51406257
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||| ||| |||||||||||||||||||||| |||||    
T  51406297 caaaagttatatgaaatagttgttcaaatatcacttctctt 51406257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 51650501 - 51650541
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||||||| |||| |||||||||||||||| ||||||    
T  51650501 caaaagttgtatgaaatggttgttcaaatatcaccactctt 51650541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 40413296 - 40413248
Alignment:
Q  39 ttatcacaaaagttgtatcaaatagttgttcaaatatcactactcttaa 87  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||    
T  40413296 ttatcataaaagttgtatcaaatggttgttcaaatatcactactcttaa 40413248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 21273640 - 21273598
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  21273640 tcacaaaagttgtatgaaatagttgttcaaatatcactactct 21273598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 9047001 - 9046960
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  9047001 tcacaaaaattgtatcaaatagttgttcaaatatcactactc 9046960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 43403925 - 43403969
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctta 86  Q
    |||| |||||||| |||||||||||||||||||||||||||||||    
T  43403925 tcacgaaagttgtctcaaatagttgttcaaatatcactactctta 43403969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 7678875 - 7678914
Alignment:
Q  44 acaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  7678875 acaaaagttgtatcaaatagttgttcaaatatcattactc 7678914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 1179517 - 1179559
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    ||||||||||| ||||||||||||||| |||||||||||||||    
T  1179517 tcacaaaagttatatcaaatagttgtttaaatatcactactct 1179559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 44672163 - 44672125
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcacta 80  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  44672163 tcacaaaagttgtatcaaataattgttcaaatatcacta 44672125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 295681 - 295730
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||| ||||||||||| | ||||||||||||||||||| ||||||||||    
T  295681 aaattgtcacaaaagttatctcaaatagttgttcaaataacactactctt 295730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 5359479 - 5359520
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  5359479 tcacaaaagttgtttcaaatagatgttcaaatatcactactc 5359520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 14708075 - 14708119
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatcacta 80  Q
    ||||||||||||||||| | |||||||||| ||||||||||||||    
T  14708075 aaattatcacaaaagttatttcaaatagtttttcaaatatcacta 14708119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 30925581 - 30925541
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  30925581 caaaagttgtataaaatggttgttcaaatatcactactctt 30925541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 23258173 - 23258216
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||| |||| |||||| |||||||||||||||||||||||    
T  23258173 tcacaaaaattgtttcaaatggttgttcaaatatcactactctt 23258216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 26294317 - 26294360
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||||||||||| |||||||  |||||||||||||||||||||    
T  26294317 tcacaaaagttgtttcaaatatatgttcaaatatcactactctt 26294360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 26307574 - 26307617
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||||||||||| |||||||  |||||||||||||||||||||    
T  26307574 tcacaaaagttgtttcaaatatatgttcaaatatcactactctt 26307617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 45101540 - 45101579
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  45101540 caaaagttgtatgaaatggttgttcaaatatcactactct 45101579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 18538519 - 18538557
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcacta 80  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  18538519 tcacaaaagttgaaccaaatagttgttcaaatatcacta 18538557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 40842073 - 40842107
Alignment:
Q  50 gttgtatcaaatagttgttcaaatatcactactct 84  Q
    |||||||||||| ||||||||||||||||||||||    
T  40842073 gttgtatcaaatggttgttcaaatatcactactct 40842107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 42543407 - 42543365
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactcttaa 87  Q
    |||||||||||| |||| ||||||||| |||||||||||||||    
T  42543407 caaaagttgtatgaaatggttgttcaattatcactactcttaa 42543365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 20473924 - 20473960
Alignment:
Q  46 aaaagttgtatcaaatagttgttcaaatatcactact 82  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  20473924 aaaagttatatgaaatagttgttcaaatatcactact 20473960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 32175100 - 32175140
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||||||| |||| ||||||||||||||| |||||||    
T  32175100 caaaagttgtatgaaatggttgttcaaatatcattactctt 32175140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 34474095 - 34474135
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||||||| |||| ||||||||||||||| |||||||    
T  34474095 caaaagttgtatgaaatggttgttcaaatatcattactctt 34474135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 3091882 - 3091925
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  3091882 tcacaaaagttgtatcaaataattgttcaaatatcactactctt 3091925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 36133115 - 36133158
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  36133115 tcacaaaagttgtatgaaatagttgttcaaatatcactactctt 36133158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 11164306 - 11164264
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  11164306 tcacaaaagttgtatcaaatagttgttcaaatatcaccactct 11164264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 13711202 - 13711245
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    ||||||||||||||  ||||||||||||||||||||||||||||    
T  13711202 tcacaaaagttgtacaaaatagttgttcaaatatcactactctt 13711245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 12600189 - 12600227
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcacta 80  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  12600189 tcacaaaagttgtatgaaatagttgttcaaatatcacta 12600227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 12962520 - 12962569
Alignment:
Q  35 gaaattatcacaaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    |||||| | |||||| || |||||||||||||||||||||||||||||||    
T  12962520 gaaattgttacaaaatttatatcaaatagttgttcaaatatcactactct 12962569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 23042353 - 23042402
Alignment:
Q  35 gaaattatcacaaaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    |||||||||||||||||| |||||||  ||||||||||||||||| ||||    
T  23042353 gaaattatcacaaaagttatatcaaaccgttgttcaaatatcactgctct 23042402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 44287464 - 44287505
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatca 77  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  44287464 aaattatcacaaaagttgtaaaaaatagttgttcaaatatca 44287505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 25801742 - 25801704
Alignment:
Q  41 atcacaaaagttgtatcaaatagttgttcaaatatcact 79  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  25801742 atcacaaaagttgtctcaaattgttgttcaaatatcact 25801704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 34138963 - 34138925
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  34138963 caaaagttgtatgaaatggttgttcaaatatcactactc 34138925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 3838904 - 3838945
Alignment:
Q  36 aaattatcacaaaagttgtatcaaatagttgttcaaatatca 77  Q
    ||||||||||||||||||||  ||||| ||||||||||||||    
T  3838904 aaattatcacaaaagttgtaaaaaataattgttcaaatatca 3838945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 19913931 - 19913968
Alignment:
Q  47 aaagttgtatcaaatagttgttcaaatatcactactct 84  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  19913931 aaagttgtatgaaatggttgttcaaatatcactactct 19913968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 26321624 - 26321583
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactctta 86  Q
    |||||||||||| ||||  |||||||||||||||||||||||    
T  26321624 caaaagttgtatgaaatgattgttcaaatatcactactctta 26321583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 29795577 - 29795618
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    ||||||||||||| |||||| | |||||||||||||||||||    
T  29795577 tcacaaaagttgtttcaaattgatgttcaaatatcactactc 29795618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 5455390 - 5455342
Alignment:
Q  35 gaaattatcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    ||||||| | |||||||||||| |||| ||||||||||||| |||||||    
T  5455390 gaaattaccccaaaagttgtataaaatggttgttcaaatattactactc 5455342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 35518419 - 35518459
Alignment:
Q  45 caaaagttgtatcaaa-tagttgttcaaatatcactactct 84  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  35518419 caaaagttgtatcaaaatagttgttcaaatatcattactct 35518459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 42283183 - 42283139
Alignment:
Q  39 ttatcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    ||||||||||| ||| || |||| |||||||||||||||||||||    
T  42283183 ttatcacaaaaattgaatgaaatggttgttcaaatatcactactc 42283139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 36147 - 36186
Alignment:
Q  46 aaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  36147 aaaagttgtatcaaatggttgttcaaatatcactactctt 36186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 39020 - 39061
Alignment:
Q  42 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  39020 tcacaaaagttgtttcaaatagatgttcaaatatcactactc 39061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 11463 - 11423
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  11463 caaaagttgtctaaaatagttgttcaaatatcactactctt 11423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 7976 - 8015
Alignment:
Q  46 aaaagttgtatcaaatagttgttcaaatatcactactctt 85  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  7976 aaaaattgtatcaaataattgttcaaatatcactactctt 8015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 6961 - 6999
Alignment:
Q  45 caaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  6961 caaaagttgtataaaatggttgttcaaatatcactactc 6999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 9589 - 9633
Alignment:
Q  39 ttatcacaaaagttgtatcaaatagttgttcaaatatcactactc 83  Q
    ||||||| |||| ||| ||| ||||||||||||||||||||||||    
T  9589 ttatcaccaaagctgtctcatatagttgttcaaatatcactactc 9633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 396007 - 396047
Alignment:
Q  46 aaaagttgtatcaaatagttgttcaaatatcactactctta 86  Q
    |||| |||||| |||| ||||||||||||||||||||||||    
T  396007 aaaaattgtatgaaatggttgttcaaatatcactactctta 396047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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