View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1720_low_68 (Length: 283)
Name: NF1720_low_68
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_68 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 153 - 272
Target Start/End: Original strand, 32558185 - 32558304
Alignment:
| Q |
153 |
tcttctttcctttcaaaggactcattgtaatgtgagaagttattgtgtgattgagaaacaagaaaatggcatgtaatgcaagagtttttgaagtggtttt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32558185 |
tcttctttcctttcaaaggactcattgtaatgtgagaagttattgtgtgattgagaaacaagaaaatggcatgtaatgcaagagtttttgaagtggtttt |
32558284 |
T |
|
| Q |
253 |
gtaactgttgttttgtgatg |
272 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
32558285 |
gtaactgttgttttgtgatg |
32558304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 32558027 - 32558101
Alignment:
| Q |
1 |
tgaaggatcgcgtatctctgctgcgtatcttccccatggtcttcttcgtactcctaggtatcttcctccccatgc |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32558027 |
tgaaggatcgcgtatctctgctgcgtatcttccccatggtcttcttcgtactcctaggtatcttcctccccatgc |
32558101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University