View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_69 (Length: 282)
Name: NF1720_low_69
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_69 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 49669293 - 49669028
Alignment:
| Q |
16 |
gttagaatgttttatatatataaactgaagtcaagcaatgttagccgcgatgctaatttgtcttgaaggttgactagcactgctgtttttggagatattt |
115 |
Q |
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| T |
49669293 |
gttagaatgttttatatatataaactgaagtcaagcaatgttagccgcgatgctaatttgtcttgaaggttgactagcactgctgtttttggagatattt |
49669194 |
T |
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| Q |
116 |
ttgtcctatgatcatttgtttgtaaattctccaacatttgnnnnnnnaaaactttttgactgtgcattcactatttcttccgattccccgccttgatttt |
215 |
Q |
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| T |
49669193 |
ttgtcctatgaacatttgtttgtaaattctccaacatttgtttttttaaaactttttgactgtgctttcactatttcttccgattccccgccttgatttt |
49669094 |
T |
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| Q |
216 |
taaaggcataagatggggtaaaaaagaatgtttcaccccaacattgatttgctcatcttaacccag |
281 |
Q |
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| T |
49669093 |
taaaggcacaagatggggtaaaaaagaatgtttcacgccaacattgattttctcatcttaacccag |
49669028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 981459 - 981514
Alignment:
| Q |
37 |
aaactgaagtcaagcaatgttagccgcgatgctaatttgtcttgaaggttgactag |
92 |
Q |
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| T |
981459 |
aaactgaagtcaagcaatgttagacgcgatgccaatttgtcttgaaggtttactag |
981514 |
T |
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