View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_70 (Length: 282)
Name: NF1720_low_70
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-153
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 47219995 - 47219723
Alignment:
| Q |
1 |
tttttaaagcaataaatttctgtggtgcagcattactaggagaaggtgcaggtacattggaagctggaactgtagcttcagcaggagaagccaatgctga |
100 |
Q |
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| T |
47219995 |
tttttaaagcaataaatttctgtggtgcagcattactaggagaaggtgcaggtacattggaagctggaactgtagcttcagcaggagaagccaatgctga |
47219896 |
T |
|
| Q |
101 |
aggtgaagatgatggagcaggtgaagcagctacagaaactttgagcacgttaatatcaaccttctgtcctgcttgacagtgtccaggtacaccacagaag |
200 |
Q |
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| T |
47219895 |
aggtgaagatgatggagcaggtgaagcagctacagaaactttgagcacgttaatatcaaccttctgtcctgcttgacagtgtccaggtacaccacagaag |
47219796 |
T |
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| Q |
201 |
aagaagtgatgaccatgatttgttatctttatggtgtcatttccagtggtgaatgttgctataggtgatgatg |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47219795 |
aagaagtgatgaccatgatttgttatctttatggtgtcatttccagtggtgaatgttgctataggtgatgatg |
47219723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 272
Target Start/End: Original strand, 738598 - 738737
Alignment:
| Q |
133 |
cagaaactttgagcacgttaatatcaaccttctgtcctgcttgacagtgtccaggtacaccacagaagaagaagtgatgaccatgatttgttatctttat |
232 |
Q |
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||||||| || ||||| || |||||||| || ||||||||||| || || ||||| | ||||| ||||| || |||||||||| ||||||||||||||| |
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| T |
738598 |
cagaaacattaagcacattgatatcaactttttgtcctgcttggcaatggccaggaatgccacacaagaaaaaatgatgaccataatttgttatctttat |
738697 |
T |
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| Q |
233 |
ggtgtcatttccagtggtgaatgttgctataggtgatgat |
272 |
Q |
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| T |
738698 |
ggagtctttgccagtggagaaggttgttaaaggggatgat |
738737 |
T |
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