View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_75 (Length: 261)
Name: NF1720_low_75
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_75 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 50 - 253
Target Start/End: Complemental strand, 25085285 - 25085083
Alignment:
| Q |
50 |
taccgtttacatgatatcttgacccaacttacaagaaaggtggcatcaacttattgagaagaatatatggatcttcatagtattgaatgtaatgaattta |
149 |
Q |
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| T |
25085285 |
taccgtttacatgatatcttgacccaacttacaagaaaggtggcatcaacttattgagaagaatatatagatcttcatagtattgaatgtaatgaattta |
25085186 |
T |
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| Q |
150 |
atgaaatatcatttgcagcatatacataagtttttatgcttgaatatttacatttatagttgtgtacaatatgattattttgattttgttgacaaatact |
249 |
Q |
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| T |
25085185 |
atg-aatatcatttgcagcatatacataagtttttatgcttgaatatttacatttatagttgtgtacaatatgattattttgattttgttgacaaatact |
25085087 |
T |
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| Q |
250 |
cacc |
253 |
Q |
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|||| |
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| T |
25085086 |
cacc |
25085083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 25073607 - 25073524
Alignment:
| Q |
101 |
tattgagaagaatatatggatcttcatagtattgaatgtaatgaatttaatgaaatatcatttgcagcatatacataagttttta |
185 |
Q |
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| T |
25073607 |
tattgagaagaatatatagaccttcatagtattaaacctattgaatttaatg-tataccatttgcaatatagacataagttttta |
25073524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 25091346 - 25091304
Alignment:
| Q |
144 |
aatttaatgaaatatcatttgcagcatatacataagtttttatg |
187 |
Q |
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| T |
25091346 |
aatttaatgaa-taccatttgcagcatatacataagtttttatg |
25091304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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