View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1720_low_78 (Length: 256)

Name: NF1720_low_78
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1720_low_78
NF1720_low_78
[»] chr5 (12 HSPs)
chr5 (1-239)||(39470579-39470817)
chr5 (2-144)||(39464451-39464593)
chr5 (4-239)||(39486577-39486818)
chr5 (2-221)||(39475616-39475841)
chr5 (2-221)||(39483370-39483592)
chr5 (2-230)||(39451110-39451344)
chr5 (2-224)||(39472146-39472368)
chr5 (98-230)||(39460456-39460591)
chr5 (182-239)||(39464377-39464434)
chr5 (93-237)||(39454840-39454984)
chr5 (96-230)||(39458125-39458259)
chr5 (2-67)||(39460360-39460425)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 39470817 - 39470579
Alignment:
Q  1 gctaaatccattcccatctctgattctctccatgtcatcaaccttccagaagtttctgttctcccaacctctggtccaggttcggatatgaacgctctcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39470817 gctaaatccattcccatctctgattctctccatgtcatcaaccttccagaagtttctgttctcccaacctctgatccaggttcggatatgaacgctctcc 39470718  T
Q  101 tcgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactggagaacaacatggacccctcgccgctgtcattgttgacatgttctgcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39470717 tcgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactggagaacaacatggacccctcgccgctgtcattgttgacatgttctgcac 39470618  T
Q  201 aaacatgattgatgttgccaaagaattttccctccctgc 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39470617 aaacatgattgatgttgccaaagaattttccctccctgc 39470579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 144
Target Start/End: Complemental strand, 39464593 - 39464451
Alignment:
Q  2 ctaaatccattcccatctctgattctctccatgtcatcaaccttccagaagtttctgttctcccaacctctggtccaggttcggatatgaacgctctcct 101  Q
    |||||||||||||||| |||||||||||  |||||||||||||||||||||||||| ||| || |||||||| ||||||||| | |||||||||||||||    
T  39464593 ctaaatccattcccatatctgattctcttaatgtcatcaaccttccagaagtttctcttccccaaacctctgatccaggttccgctatgaacgctctcct 39464494  T
Q  102 cgaagctcataaagcaaacgtcaaacaagctatctccaacctc 144  Q
     || ||||| ||| ||||||||||||||||  |||| ||||||    
T  39464493 tgatgctcacaaaccaaacgtcaaacaagccgtctctaacctc 39464451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 39486577 - 39486818
Alignment:
Q  4 aaatccattcccatctctgattctctccatgtcatcaaccttccagaagtttctgttctcccaacctctggtccaggttcggatatgaacgctctcctcg 103  Q
    |||||| ||||||| || ||||||||||| ||||||||||||||||||  |||| ||| ||||| | | |  ||| |||  |  |||||||||||||| |    
T  39486577 aaatcccttcccatttccgattctctccaggtcatcaaccttccagaatgttctcttcccccaaacaccgaaccacgttttgtcatgaacgctctccttg 39486676  T
Q  104 aagctcataaagcaaacgtcaaacaagctatctccaacctcactact------ggagaacaacatggacccctcgccgctgtcattgttgacatgttctg 197  Q
    ||||||| ||| ||||||||||||||||| | |||||||||||||||      ||| ||| || ||||| ||| |||||  || ||||||||||||||||    
T  39486677 aagctcagaaaccaaacgtcaaacaagctgtatccaacctcactactagagaaggacaaccacctggacaccttgccgccttcgttgttgacatgttctg 39486776  T
Q  198 cacaaacatgattgatgttgccaaagaattttccctccctgc 239  Q
    ||| | |||||||||| ||||||||||||||||| |||||||    
T  39486777 caccaccatgattgatattgccaaagaattttccatccctgc 39486818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 39475616 - 39475841
Alignment:
Q  2 ctaaatccattcccatctctgattctctccatgtcatcaaccttccagaagtttctgttctcccaacctctggtccaggttcggat---atgaacgctct 98  Q
    |||||||| |||| ||||| || |||||| |  ||||||||||||||||||||||| ||| ||||| | | | ||||||||    |   ||||  |||||    
T  39475616 ctaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctct 39475715  T
Q  99 cctcgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactggaga---acaacatggacccctcgccgctgtcattgttgacatgttc 195  Q
    |||||||||||| ||| ||||||| ||||||||| ||||||||||||||||| ||||   ||||||||||| |||||||||  || ||||||||||||||    
T  39475716 cctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcactactagagaaggacaacatggacacctcgccgccttcgttgttgacatgttc 39475815  T
Q  196 tgcacaaacatgattgatgttgccaa 221  Q
    ||||| | ||||||  ||||||||||    
T  39475816 tgcaccaccatgatcaatgttgccaa 39475841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 39483370 - 39483592
Alignment:
Q  2 ctaaatccattcccatctctgattctctccatgtcatcaaccttccagaagtttctgttctcccaacctctggtccaggttcggatatgaacgctctcct 101  Q
    |||||||| ||||||||| ||||| |||  |||| |||||||||||||||  || | ||| ||||| ||  | || || ||| |  || |||||||||||    
T  39483370 ctaaatcccttcccatctttgattttcttaatgtaatcaaccttccagaatgttatcttcccccaaacttcgatctagtttctgccatcaacgctctcct 39483469  T
Q  102 cgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactggagaa---caacatggacccctcgccgctgtcattgttgacatgttctgc 198  Q
     |||||||| ||| ||||| | | ||||||| ||||||||||||||||| |||||   |||||||||| |||| ||||  || |||||||||||||||||    
T  39483470 tgaagctcagaaaccaaacataatacaagctgtctccaacctcactactagagaaggacaacatggacacctctccgccttcgttgttgacatgttctgc 39483569  T
Q  199 acaaacatgattgatgttgccaa 221  Q
    || | ||||||||||||||||||    
T  39483570 accaccatgattgatgttgccaa 39483592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 39451110 - 39451344
Alignment:
Q  2 ctaaatccattcccatctctgattctctccatgtcatcaaccttccagaagtttctgttctcccaacctctggtccaggttcggat---atgaacgctct 98  Q
    |||||||| |||| ||||| ||||||||| |  ||||||||||||||||||||||| |||  |||| | |   ||||||||  | |   |||   |||||    
T  39451110 ctaaatcccttcctatctcagattctctcaacatcatcaaccttccagaagtttctcttcctccaaacaccaatccaggtttcgcttccatgcctgctct 39451209  T
Q  99 cctcgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactggagaac---aacatggacccctcgccgctgtcattgttgacatgttc 195  Q
    |||||||||||| ||| |||| |||||||||||  | || |||||||||||||||| |    || |||||  ||||||| |  || ||||||||||||||    
T  39451210 cctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactactggaggaggagaaaatggagtcctcgccaccatcgttgttgacatgttc 39451309  T
Q  196 tgcacaaacatgattgatgttgccaaagaattttc 230  Q
    ||||| | |||||||||| ||||||||||||||||    
T  39451310 tgcaccaccatgattgatattgccaaagaattttc 39451344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 39472146 - 39472368
Alignment:
Q  2 ctaaatccattcccatctctgattctctccatgtcatcaaccttccagaagtttctgttctcccaacctctggtccaggttcggatatgaacgctctcct 101  Q
    |||||||| |||| ||||| ||||| |||||  |||||||||||||||||  |||| ||  ||||| | | | || |||| |   |||||  || |||||    
T  39472146 ctaaatcccttcctatctccgattcactccacatcatcaaccttccagaatgttctcttgccccaaacacagatcaaggtccctctatgactgcgctcct 39472245  T
Q  102 cgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactggagaacaacatggacccctcgccgctgtcattgttgacatgttctgcaca 201  Q
    ||||||||| ||| |||||||||||||||   | || ||||||| |||  ||  | || |||||  ||| |||||| |  ||||||||||||||||||||    
T  39472246 cgaagctcagaaaccaaacgtcaaacaagtagtatctaacctcattaccagatcagaaaatggagtccttgccgcttttgttgttgacatgttctgcaca 39472345  T
Q  202 aacatgattgatgttgccaaaga 224  Q
    |||||||||||||||||||||||    
T  39472346 aacatgattgatgttgccaaaga 39472368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 230
Target Start/End: Original strand, 39460456 - 39460591
Alignment:
Q  98 tcctcgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactg---gagaacaacatggacccctcgccgctgtcattgttgacatgtt 194  Q
    ||||||||||||| ||| ||||||||||||||||  | || || |||||||||    ||||| |||||||| ||||| | ||  |  |||||||||||||    
T  39460456 tcctcgaagctcagaaatcaaacgtcaaacaagccgtatctaatctcactactactagagaaaaacatggaaccctcacagcctttgttgttgacatgtt 39460555  T
Q  195 ctgcacaaacatgattgatgttgccaaagaattttc 230  Q
    |||||| || ||||||||| ||||||||||||||||    
T  39460556 ctgcactaaaatgattgatattgccaaagaattttc 39460591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 39464434 - 39464377
Alignment:
Q  182 ttgttgacatgttctgcacaaacatgattgatgttgccaaagaattttccctccctgc 239  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||    
T  39464434 ttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgc 39464377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 237
Target Start/End: Original strand, 39454840 - 39454984
Alignment:
Q  93 cgctctcctcgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactggagaacaacatggacccctcgccgctgtcattgttgacatg 192  Q
    ||||| ||| |||||||| ||| ||||||||||||||||  | || ||||||| |||||| |||  |  ||||  |||||| ||| || |||||||||||    
T  39454840 cgctcaccttgaagctcagaaaccaaacgtcaaacaagccgtatctaacctcattactggtgaagcaagtggagtcctcgcagctttcgttgttgacatg 39454939  T
Q  193 ttctgcacaaacatgattgatgttgccaaagaattttccctccct 237  Q
    | |||||||  ||||||||||||||||||||| || ||| |||||    
T  39454940 tcctgcacagccatgattgatgttgccaaagagttctccatccct 39454984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 230
Target Start/End: Complemental strand, 39458259 - 39458125
Alignment:
Q  96 tctcctcgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactggagaacaacatggacccctcgccgctgtcattgttgacatgttc 195  Q
    ||||||| ||||||| ||| ||||||||||| ||||  |||||||||||||||  | |  | || |||||  ||| || ||  |||||||||||||||||    
T  39458259 tctcctcaaagctcagaaaccaaacgtcaaaaaagccgtctccaacctcactaaagcaccagaaaatggagtcctagctgcattcattgttgacatgttc 39458160  T
Q  196 tgcacaaacatgattgatgttgccaaagaattttc 230  Q
    ||||| | ||||||||||||||  |||||||||||    
T  39458159 tgcaccaccatgattgatgttgtaaaagaattttc 39458125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 39460360 - 39460425
Alignment:
Q  2 ctaaatccattcccatctctgattctctccatgtcatcaaccttccagaagtttctgttctcccaa 67  Q
    |||||||  ||||||  |||||||||||| |  ||||||||||||||||||||||| ||| |||||    
T  39460360 ctaaatcacttcccacttctgattctctcgacatcatcaaccttccagaagtttctcttcccccaa 39460425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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