View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1720_low_79 (Length: 253)

Name: NF1720_low_79
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1720_low_79
NF1720_low_79
[»] chr7 (13 HSPs)
chr7 (1-228)||(34354369-34354596)
chr7 (102-237)||(37524128-37524263)
chr7 (105-233)||(39476512-39476640)
chr7 (105-211)||(41219372-41219478)
chr7 (120-237)||(21153753-21153870)
chr7 (106-237)||(8260864-8260996)
chr7 (105-188)||(27874045-27874128)
chr7 (192-237)||(26502232-26502277)
chr7 (192-237)||(26590437-26590482)
chr7 (192-237)||(48212011-48212056)
chr7 (125-237)||(18239378-18239490)
chr7 (192-237)||(1537047-1537093)
chr7 (192-237)||(38791077-38791123)
[»] chr2 (16 HSPs)
chr2 (102-238)||(29132605-29132741)
chr2 (105-237)||(29908486-29908618)
chr2 (105-238)||(8556221-8556354)
chr2 (191-237)||(12967450-12967496)
chr2 (42-97)||(29132778-29132833)
chr2 (125-171)||(12874246-12874292)
chr2 (148-238)||(24937367-24937457)
chr2 (148-238)||(25686023-25686113)
chr2 (41-82)||(5290857-5290898)
chr2 (192-237)||(22495875-22495920)
chr2 (152-237)||(28266037-28266126)
chr2 (194-237)||(18394773-18394816)
chr2 (128-233)||(6903691-6903795)
chr2 (38-82)||(4616796-4616840)
chr2 (197-237)||(11713194-11713234)
chr2 (129-237)||(13785051-13785159)
[»] chr1 (21 HSPs)
chr1 (105-238)||(3660147-3660280)
chr1 (102-238)||(21482886-21483022)
chr1 (105-237)||(41871716-41871848)
chr1 (105-238)||(46923761-46923894)
chr1 (125-238)||(39222706-39222819)
chr1 (108-237)||(48566744-48566873)
chr1 (125-237)||(49597196-49597308)
chr1 (102-188)||(47983662-47983748)
chr1 (192-238)||(30308417-30308463)
chr1 (42-96)||(36185991-36186045)
chr1 (192-237)||(39650429-39650474)
chr1 (192-237)||(50065694-50065739)
chr1 (102-210)||(18843976-18844084)
chr1 (104-171)||(5770599-5770666)
chr1 (107-168)||(5766863-5766924)
chr1 (150-238)||(18171935-18172022)
chr1 (150-237)||(46178669-46178756)
chr1 (192-237)||(47485620-47485665)
chr1 (42-82)||(3757423-3757463)
chr1 (42-86)||(23941469-23941513)
chr1 (42-90)||(43514917-43514965)
[»] chr5 (14 HSPs)
chr5 (105-238)||(1172906-1173039)
chr5 (105-238)||(6427267-6427399)
chr5 (140-235)||(10532811-10532906)
chr5 (105-238)||(7083942-7084075)
chr5 (118-237)||(41758683-41758802)
chr5 (141-237)||(28784741-28784837)
chr5 (192-237)||(40017154-40017199)
chr5 (193-236)||(1974388-1974431)
chr5 (104-186)||(16100863-16100945)
chr5 (192-237)||(19401801-19401846)
chr5 (140-237)||(25898653-25898750)
chr5 (104-165)||(1081930-1081992)
chr5 (104-170)||(11125823-11125888)
chr5 (194-235)||(3461387-3461428)
[»] chr4 (21 HSPs)
chr4 (129-237)||(32935692-32935800)
chr4 (105-238)||(49065520-49065654)
chr4 (105-238)||(21713135-21713268)
chr4 (105-211)||(27761127-27761233)
chr4 (157-238)||(14329020-14329101)
chr4 (192-237)||(33161860-33161905)
chr4 (125-229)||(38131442-38131546)
chr4 (140-212)||(42039033-42039105)
chr4 (192-233)||(1227913-1227954)
chr4 (47-96)||(32935629-32935678)
chr4 (192-237)||(46814084-46814129)
chr4 (192-237)||(47043790-47043835)
chr4 (152-232)||(31823039-31823119)
chr4 (104-171)||(2777957-2778024)
chr4 (104-171)||(31936360-31936426)
chr4 (192-235)||(36174383-36174426)
chr4 (192-237)||(12572598-12572643)
chr4 (192-237)||(28796852-28796897)
chr4 (107-210)||(9242917-9243020)
chr4 (42-82)||(47020005-47020045)
chr4 (118-165)||(52789392-52789440)
[»] scaffold0861 (1 HSPs)
scaffold0861 (102-230)||(3703-3831)
[»] chr8 (6 HSPs)
chr8 (102-237)||(23542714-23542849)
chr8 (105-238)||(43693535-43693668)
chr8 (105-237)||(34471564-34471695)
chr8 (42-96)||(23542887-23542941)
chr8 (191-233)||(4639844-4639886)
chr8 (192-237)||(43635340-43635385)
[»] chr3 (13 HSPs)
chr3 (105-237)||(48086826-48086958)
chr3 (125-237)||(25574830-25574942)
chr3 (105-237)||(39415329-39415461)
chr3 (192-237)||(2325413-2325458)
chr3 (158-237)||(8628467-8628545)
chr3 (104-218)||(6462978-6463092)
chr3 (104-218)||(6755705-6755819)
chr3 (192-237)||(42947596-42947641)
chr3 (192-237)||(44833656-44833701)
chr3 (192-237)||(53824523-53824568)
chr3 (192-237)||(16967781-16967826)
chr3 (117-170)||(50561439-50561492)
chr3 (197-237)||(32211200-32211240)
[»] chr6 (9 HSPs)
chr6 (102-237)||(13312567-13312702)
chr6 (105-237)||(319208-319340)
chr6 (104-171)||(23912287-23912354)
chr6 (192-237)||(14153585-14153630)
chr6 (192-237)||(14830623-14830668)
chr6 (192-237)||(24173628-24173673)
chr6 (192-237)||(35053538-35053583)
chr6 (192-237)||(16444498-16444543)
chr6 (42-83)||(30633435-30633476)
[»] scaffold0217 (1 HSPs)
scaffold0217 (107-237)||(25584-25715)
[»] scaffold1455 (1 HSPs)
scaffold1455 (192-237)||(176-221)
[»] scaffold0753 (1 HSPs)
scaffold0753 (118-210)||(3995-4088)
[»] scaffold0004 (1 HSPs)
scaffold0004 (47-87)||(39128-39168)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 34354596 - 34354369
Alignment:
Q  1 ctccaactctggcccaatcacaagtttttcattgttgttgaaattttgctcttcctccagcacatttcgctcgcgccttgcagtcattcctaatatgtcc 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34354596 ctccaactctggcccaatcacaagtttttcattgttcttgaaattttgctcttcccccagcacatttcgctcgcgccttgcagtcattcctaatatgtcc 34354497  T
Q  101 ttaacgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaaca 200  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  34354496 ttaacgcaccttatatgctctgcgtgacttaagtcacgtaccactggcctatgcgcgagttaactcacacacgttggctggtgatcagtgttgaagaaca 34354397  T
Q  201 aatgttttttggtctttggtcagttttt 228  Q
    ||||||||||||||||||||||||||||    
T  34354396 aatgttttttggtctttggtcagttttt 34354369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 102 - 237
Target Start/End: Complemental strand, 37524263 - 37524128
Alignment:
Q  102 taacgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaa 201  Q
    |||||||||||||| ||||||| |||||||||| ||| ||||||||||| ||||||||||| ||||||||| |||||||||| ||||   ||||| ||||    
T  37524263 taacgcaccttataagctctgcgtgacttaagtcacgcaccactggcctgtgcgcgagttacctcacgcacgttggctggtggtcagaactgaagtacaa 37524164  T
Q  202 atgttttttggtctttggtcagtttttcaacattca 237  Q
      ||||||||||||||||||||||||||||||||||    
T  37524163 ccgttttttggtctttggtcagtttttcaacattca 37524128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 105 - 233
Target Start/End: Original strand, 39476512 - 39476640
Alignment:
Q  105 cgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatg 204  Q
    |||||||||||  || ||| |||||||||| ||| |||| | ||||||||||||||||||||||||||  |||| |||| |||| | ||||||||||| |    
T  39476512 cgcaccttataatctatgcgtgacttaagtcacgcaccattagcctatgcgcgagttaactcacgcaccatggccggtggtcagagctgaagaacaaacg 39476611  T
Q  205 ttttttggtctttggtcagtttttcaaca 233  Q
    |||||||||| ||| |||||||| |||||    
T  39476612 ttttttggtccttgatcagttttccaaca 39476640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 41219478 - 41219372
Alignment:
Q  105 cgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatg 204  Q
    |||| ||||||  |||||| |||||||||| ||| | ||||||||||||||||||||||||||||||| |||||||||| ||||   ||||||||||| |    
T  41219478 cgcatcttataacctctgcgtgacttaagtcacgcatcactggcctatgcgcgagttaactcacgcacgttggctggtggtcagaactgaagaacaaacg 41219379  T
Q  205 ttttttg 211  Q
    |||||||    
T  41219378 ttttttg 41219372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 237
Target Start/End: Original strand, 21153753 - 21153870
Alignment:
Q  120 ctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttggtctttgg 219  Q
    |||| ||| |||||| ||| ||||||||| | |||| |||||||||||||||| | ||| |||| || | | ||||||||| | |||||||||||||||     
T  21153753 ctgcgtgagttaagtcacgcaccactggcatgtgcgtgagttaactcacgcacgtcggccggtggtcggagctgaagaacagacgttttttggtctttgc 21153852  T
Q  220 tcagtttttcaacattca 237  Q
    |||||||||| |||||||    
T  21153853 tcagtttttccacattca 21153870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 237
Target Start/End: Original strand, 8260864 - 8260996
Alignment:
Q  106 gcaccttatatgctctgcatgacttaagtaacgtaccactg-gcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatg 204  Q
    ||||||||||  |||||| |||||||||| ||| ||||||| |||| ||||||||||||||||||||  ||||| |||| ||||   ||| ||||||| |    
T  8260864 gcaccttataatctctgcgtgacttaagtcacgcaccactgagcctttgcgcgagttaactcacgcaagttggccggtggtcagaactgatgaacaaacg 8260963  T
Q  205 ttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||   |||||||| | |||||||||||||    
T  8260964 tttttttcactttggtcgggttttcaacattca 8260996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 188
Target Start/End: Complemental strand, 27874128 - 27874045
Alignment:
Q  105 cgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcag 188  Q
    |||||| ||||  |||||| |||||||||  ||| ||||||| ||||||||||||||||||||||||| ||||| |||| ||||    
T  27874128 cgcaccatataacctctgcgtgacttaagccacgcaccactgacctatgcgcgagttaactcacgcacgttggccggtggtcag 27874045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 26502277 - 26502232
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||    
T  26502277 tgaagaacaaacgttttttggtctgtggtcagtttttcaacattca 26502232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 26590437 - 26590482
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||    
T  26590437 tgaagaacaaacgttttttggtctgtggtcagtttttcaacattca 26590482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 48212011 - 48212056
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||    
T  48212011 tgaagaacaaacgttttttggtctgtggtcagtttttcaacattca 48212056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 237
Target Start/End: Complemental strand, 18239490 - 18239378
Alignment:
Q  125 tgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttggtctttggtcagt 224  Q
    |||||||||| ||| | || ||||||||||||||||||||| |||||| ||||  |||| ||||   ||||||||||| ||||||||  |  |||||||     
T  18239490 tgacttaagtcacgcatcaatggcctatgcgcgagttaactaacgcacgttggtcggtggtcagaactgaagaacaaacgttttttgaacggtggtcagg 18239391  T
Q  225 ttttcaacattca 237  Q
    |||||||| ||||    
T  18239390 ttttcaaccttca 18239378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 1537093 - 1537047
Alignment:
Q  192 tgaagaacaaatgtttttt-ggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  1537093 tgaagaacaaacgtttttttggtctgtggtcagtttttcaacattca 1537047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 38791077 - 38791123
Alignment:
Q  192 tgaagaacaaatgtttt-ttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| ||||| ||||||| |||||||||||||||||||||    
T  38791077 tgaagaacaaacgtttttttggtctgtggtcagtttttcaacattca 38791123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 102 - 238
Target Start/End: Complemental strand, 29132741 - 29132605
Alignment:
Q  102 taacgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaa 201  Q
    |||||||||||||| | ||| | |||||||||| ||| ||||| ||||||||||||||||||||||||||| ||||| |||| |||| | ||||||||||    
T  29132741 taacgcaccttataagttctacgtgacttaagtcacgcaccaccggcctatgcgcgagttaactcacgcacgttggccggtggtcagagctgaagaacaa 29132642  T
Q  202 atgttttttggtctttggtcagtttttcaacattcat 238  Q
    | |||||||||||||||||||||||||||||||||||    
T  29132641 acgttttttggtctttggtcagtttttcaacattcat 29132605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 237
Target Start/End: Original strand, 29908486 - 29908618
Alignment:
Q  105 cgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatg 204  Q
    |||||||||||  |||||| |||||||||| |||  ||||||||||||||||||||||||||| |||| ||||| |||| | ||   ||||||||||| |    
T  29908486 cgcaccttataacctctgcgtgacttaagtcacgcgccactggcctatgcgcgagttaactcatgcacgttggccggtggttagaactgaagaacaaacg 29908585  T
Q  205 ttttttggtctttggtcagtttttcaacattca 237  Q
    |||||||| |  ||||||| |||||||| ||||    
T  29908586 ttttttggacggtggtcaggttttcaactttca 29908618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 8556221 - 8556354
Alignment:
Q  105 cgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatg 204  Q
    |||||||||||  || ||  |||||||||| ||| | || || ||||||| |||||| |||||| |||  |||| |||| |||| | ||||||||||||     
T  8556221 cgcaccttataatctatgtgtgacttaagtcacgcatcaatgccctatgcacgagtttactcacacaccatggccggtggtcagagctgaagaacaaata 8556320  T
Q  205 ttttttggtctttggtcagtttttcaacattcat 238  Q
    |||||||||| ||| |||||||| ||||||||||    
T  8556321 ttttttggtccttgatcagttttccaacattcat 8556354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 12967450 - 12967496
Alignment:
Q  191 ttgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||    
T  12967450 ttgaagaacaaacgttttttggtctgtggtcagtttttcaacattca 12967496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 29132833 - 29132778
Alignment:
Q  42 aattttgctcttcctccagcacatttcgctcgcgccttgcagtcattcctaatatg 97  Q
    |||||||||||||  ||||||||||||||||||| | ||||| |||||||||||||    
T  29132833 aattttgctcttcacccagcacatttcgctcgcgtcctgcagccattcctaatatg 29132778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 12874246 - 12874292
Alignment:
Q  125 tgacttaagtaacgtaccactggcctatgcgcgagttaactcacgca 171  Q
    |||||||||| ||| ||||||| ||||||||||||||||||||||||    
T  12874246 tgacttaagtcacgcaccactgacctatgcgcgagttaactcacgca 12874292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 24937457 - 24937367
Alignment:
Q  148 cctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttggtctttggtcagtttttcaacattcat 238  Q
    ||||||||||||||||||||||||| ||||| |||||||||   |   ||||||| ||||||||| |  ||||||| |||||||| |||||    
T  24937457 cctatgcgcgagttaactcacgcacgttggccggtgatcagaactcttgaacaaacgttttttggacggtggtcaggttttcaaccttcat 24937367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 25686113 - 25686023
Alignment:
Q  148 cctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttggtctttggtcagtttttcaacattcat 238  Q
    ||||||||||||||||||||||||| |||||||||| ||||   |   ||||||| ||||||||| |  ||||||| |||||||| |||||    
T  25686113 cctatgcgcgagttaactcacgcacgttggctggtggtcagaactcttgaacaaacgttttttggacggtggtcaggttttcaaccttcat 25686023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 5290898 - 5290857
Alignment:
Q  41 aaattttgctcttcctccagcacatttcgctcgcgccttgca 82  Q
    |||||||||||||| |||||||||||||||||||||| ||||    
T  5290898 aaattttgctcttcatccagcacatttcgctcgcgccgtgca 5290857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 22495920 - 22495875
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| |||||||||||| |||||| ||||||||||||||    
T  22495920 tgaagaacaaacgttttttggtctgtggtcaatttttcaacattca 22495875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 28266037 - 28266126
Alignment:
Q  152 tgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttggtct----ttggtcagtttttcaacattca 237  Q
    ||||||||||||||||||||| |||   |||| |||| |  ||||||||||  |||||||||||    ||||||||||||||||||||||    
T  28266037 tgcgcgagttaactcacgcacgttgatcggtggtcagagacgaagaacaaacattttttggtctgtggttggtcagtttttcaacattca 28266126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 18394816 - 18394773
Alignment:
Q  194 aagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    |||||||||  ||||||||||| |||||||||||||||||||||    
T  18394816 aagaacaaacattttttggtctgtggtcagtttttcaacattca 18394773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 233
Target Start/End: Complemental strand, 6903795 - 6903691
Alignment:
Q  128 cttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttggtctttggtcagtttt 227  Q
    ||||||| ||| ||||||||||  ||||||||||||||||| ||  ||||| |||| ||||   |||||||||||  ||||||   |||||||||| |||    
T  6903795 cttaagtcacgcaccactggccggtgcgcgagttaactcacaca-tttggccggtggtcagaactgaagaacaaacatttttttcactttggtcaggttt 6903697  T
Q  228 tcaaca 233  Q
    ||||||    
T  6903696 tcaaca 6903691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 4616840 - 4616796
Alignment:
Q  38 ttgaaattttgctcttcctccagcacatttcgctcgcgccttgca 82  Q
    ||||||||||||| |||  ||||||||||||||||||||| ||||    
T  4616840 ttgaaattttgcttttcacccagcacatttcgctcgcgccctgca 4616796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 11713194 - 11713234
Alignment:
Q  197 aacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    |||||| ||||||| |||| |||||||||||||||||||||    
T  11713194 aacaaacgttttttagtctgtggtcagtttttcaacattca 11713234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 237
Target Start/End: Original strand, 13785051 - 13785159
Alignment:
Q  129 ttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttggtctttggtcagttttt 228  Q
    |||||| ||| |||| ||||||| | |||||||||||||||||| ||||| | || || | | | | ||||||| ||||||||| |  ||||||| ||||    
T  13785051 ttaagtcacgcaccattggcctaagtgcgagttaactcacgcacgttggccgatggtctgagctcatgaacaaacgttttttggacggtggtcaggtttt 13785150  T
Q  229 caacattca 237  Q
    |||| ||||    
T  13785151 caactttca 13785159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 3660280 - 3660147
Alignment:
Q  105 cgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatg 204  Q
    ||||||||||| ||||||| |||||||||| ||| |||| |||||||||||||||||||||||||||| ||||| |||| |||| | ||||||||||| |    
T  3660280 cgcaccttataagctctgcgtgacttaagtcacgcaccattggcctatgcgcgagttaactcacgcaccttggccggtggtcagagctgaagaacaaacg 3660181  T
Q  205 ttttttggtctttggtcagtttttcaacattcat 238  Q
    |||||| |||||||||| ||||||||||||||||    
T  3660180 tttttttgtctttggtcggtttttcaacattcat 3660147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 102 - 238
Target Start/End: Original strand, 21482886 - 21483022
Alignment:
Q  102 taacgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaa 201  Q
    |||| ||||||||| ||||||| |||||||||| ||| |||||| |||||||| ||||||||||||||||| ||||| | || |||| | ||||||||||    
T  21482886 taacacaccttataagctctgcgtgacttaagtcacgcaccactagcctatgcacgagttaactcacgcacgttggccgatggtcagagctgaagaacaa 21482985  T
Q  202 atgttttttggtctttggtcagtttttcaacattcat 238  Q
    |  |||||| |||||||||||||||||||||||||||    
T  21482986 actttttttagtctttggtcagtttttcaacattcat 21483022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 105 - 237
Target Start/End: Original strand, 41871716 - 41871848
Alignment:
Q  105 cgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatg 204  Q
    |||||||||||  |||||  |||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||| | ||   ||||||||||| |    
T  41871716 cgcaccttataacctctgtgtgacttaagtaacgcaccactggcctatgcgcgagttaactcacgcacgttggccggtggtaagaactgaagaacaaacg 41871815  T
Q  205 ttttttggtctttggtcagtttttcaacattca 237  Q
    |||||||| |  ||||||| |||||||| ||||    
T  41871816 ttttttggacggtggtcaggttttcaaccttca 41871848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 46923761 - 46923894
Alignment:
Q  105 cgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatg 204  Q
    |||||||||||  || ||| |||||||||| ||| |||| ||||||||||||||||||||||||||||  || | |||| |||| | |||||||||||      
T  46923761 cgcaccttataatctatgcgtgacttaagtcacgcaccaatggcctatgcgcgagttaactcacgcaccatgtccggtggtcagagatgaagaacaaaca 46923860  T
Q  205 ttttttggtctttggtcagtttttcaacattcat 238  Q
    |||||||||| ||| |||||||| ||||||||||    
T  46923861 ttttttggtccttgatcagttttccaacattcat 46923894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 39222706 - 39222819
Alignment:
Q  125 tgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttggtctttggtcagt 224  Q
    |||||||||| ||| |||| |||||||||| |||||||||||||||||  |||  |||| |||| | ||||||||||| ||||||||||| ||| |||||    
T  39222706 tgacttaagtcacgcaccaatggcctatgcacgagttaactcacgcaccatggtcggtggtcagagctgaagaacaaacgttttttggtccttgatcagt 39222805  T
Q  225 ttttcaacattcat 238  Q
    ||| ||||||||||    
T  39222806 tttccaacattcat 39222819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 48566744 - 48566873
Alignment:
Q  108 accttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttt 207  Q
    ||||||||  || ||| |||||||||| ||| |  |||||||||||||||||||||||||||||| |||||||||| ||||   ||||||||||| ||||    
T  48566744 accttataacctttgcgtgacttaagtcacgcattactggcctatgcgcgagttaactcacgcacgttggctggtggtcagaactgaagaacaaacgttt 48566843  T
Q  208 tttggtctttggtcagtttttcaacattca 237  Q
    ||||| |  ||||||| |||||||| ||||    
T  48566844 tttggacggtggtcaggttttcaaccttca 48566873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 237
Target Start/End: Original strand, 49597196 - 49597308
Alignment:
Q  125 tgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttggtctttggtcagt 224  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||| ||||  |||| ||||   | ||||||||| | ||||||| |  |||||||     
T  49597196 tgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgttggtcggtggtcagaactaaagaacaaacgatttttggacggtggtcagg 49597295  T
Q  225 ttttcaacattca 237  Q
    |||||||| ||||    
T  49597296 ttttcaaccttca 49597308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 188
Target Start/End: Original strand, 47983662 - 47983748
Alignment:
Q  102 taacgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcag 188  Q
    |||||||||||||||| ||||| ||| |||||| || |||||||||| | |||||||||||||| |||||| ||||| |||| ||||    
T  47983662 taacgcaccttatatgttctgcgtgagttaagtcacttaccactggcatgtgcgcgagttaactgacgcacgttggccggtggtcag 47983748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 30308417 - 30308463
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattcat 238  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||    
T  30308417 tgaagaacaaatgttttttggtctttgatcagttttccaacattcat 30308463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 36186045 - 36185991
Alignment:
Q  42 aattttgctcttcctccagcacatttcgctcgcgccttgcagtcattcctaatat 96  Q
    ||||||||||||||| |||||||||||||||||||| ||||| |||||| |||||    
T  36186045 aattttgctcttcctgcagcacatttcgctcgcgccctgcagccattccaaatat 36185991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 39650429 - 39650474
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||    
T  39650429 tgaagaacaaacgttttttggtctgtggtcagtttttcaacattca 39650474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 50065694 - 50065739
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||    
T  50065694 tgaagaacaaacgttttttggtctgtggtcagtttttcaacattca 50065739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 210
Target Start/End: Complemental strand, 18844084 - 18843976
Alignment:
Q  102 taacgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaa 201  Q
    |||| ||| ||||||| ||||| |||||||||| ||  ||||||||  | ||||| ||||||||||||||| ||||| |||||||||   |||||||||     
T  18844084 taacacactttatatgttctgcgtgacttaagtcacacaccactggtatgtgcgcaagttaactcacgcacgttggccggtgatcagaactgaagaacac 18843985  T
Q  202 atgtttttt 210  Q
    | |||||||    
T  18843984 acgtttttt 18843976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 5770666 - 5770599
Alignment:
Q  104 acgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgca 171  Q
    |||||||||||| ||| ||| || ||||||| ||| ||||||||||| |||||||| |||||||||||    
T  5770666 acgcaccttataagctttgcgtggcttaagtcacgcaccactggcctgtgcgcgagctaactcacgca 5770599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 5766924 - 5766863
Alignment:
Q  107 caccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcac 168  Q
    ||||||||| ||| ||| || ||||||| ||| ||||||||||| |||||||||||||||||    
T  5766924 caccttataagctttgcgtggcttaagtcacgcaccactggcctgtgcgcgagttaactcac 5766863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 18172022 - 18171935
Alignment:
Q  150 tatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttggtctttggtcagtttttcaacattcat 238  Q
    ||||| |||||||| |||||||  |||||||||| | ||   ||||||||||| ||| || ||||||||||||| ||||||||||||||    
T  18172022 tatgcacgagttaaatcacgcagcttggctggtggttagctctgaagaacaaacgttcttgggtctttggtcag-ttttcaacattcat 18171935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 237
Target Start/End: Original strand, 46178669 - 46178756
Alignment:
Q  150 tatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||||||||||||||  ||| | |||| ||||   ||||||||||| ||||||||| |  ||||||| |||||||| ||||    
T  46178669 tatgcgcgagttaactcacgcatgttgaccggtggtcagaactgaagaacaaacgttttttggccggtggtcaggttttcaaccttca 46178756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 47485620 - 47485665
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||  |||||||||| | |||||||||||||||||||||    
T  47485620 tgaagaacaaccgttttttggtatgtggtcagtttttcaacattca 47485665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 3757423 - 3757463
Alignment:
Q  42 aattttgctcttcctccagcacatttcgctcgcgccttgca 82  Q
    ||||||||||||||||| |||| ||||||||||||| ||||    
T  3757423 aattttgctcttcctcctgcacttttcgctcgcgccctgca 3757463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 23941469 - 23941513
Alignment:
Q  42 aattttgctcttcctccagcacatttcgctcgcgccttgcagtca 86  Q
    |||| ||||||||  ||||||||||||||||||||| ||||||||    
T  23941469 aattctgctcttctcccagcacatttcgctcgcgccctgcagtca 23941513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 43514965 - 43514917
Alignment:
Q  42 aattttgctcttcctccagcacatttcgctcgcgccttgcagtcattcc 90  Q
    |||| ||||||||  ||||||| ||||||||||||| ||||||||||||    
T  43514965 aattatgctcttcacccagcacttttcgctcgcgccctgcagtcattcc 43514917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 1173039 - 1172906
Alignment:
Q  105 cgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatg 204  Q
    |||||||||||  |||||| |||||||||| ||| ||||||||||||||||| ||||||||||||||| ||||  | || | || | ||||||||||| |    
T  1173039 cgcaccttataacctctgcgtgacttaagttacgcaccactggcctatgcgccagttaactcacgcaccttggtcgatggttagagctgaagaacaaacg 1172940  T
Q  205 ttttttggtctttggtcagtttttcaacattcat 238  Q
    ||||||||||||||||||| ||||||||||||||    
T  1172939 ttttttggtctttggtcaggttttcaacattcat 1172906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 6427267 - 6427399
Alignment:
Q  105 cgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatg 204  Q
    |||||||||||  || ||| |||||||||| ||| || |||||||||||||||||||||||||||||| ||||| |||||| || | ||||||||||| |    
T  6427267 cgcaccttataaactatgcgtgacttaagtcacgcacaactggcctatgcgcgagttaactcacgcaccttggccggtgattagagctgaagaacaaacg 6427366  T
Q  205 ttttttggtctttggtcagtttttcaacattcat 238  Q
    |||||||||| ||  |||||||| ||||||||||    
T  6427367 ttttttggtcctt-atcagttttccaacattcat 6427399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 235
Target Start/End: Original strand, 10532811 - 10532906
Alignment:
Q  140 accactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttggtctttggtcagtttttcaacatt 235  Q
    ||||||||| | ||||||||||||||||||||  ||||| |||| |||| | ||||||||||| ||||||||||||||||||| ||||||||||||    
T  10532811 accactggcttgtgcgcgagttaactcacgcaagttggccggtggtcagagctgaagaacaaacgttttttggtctttggtcaatttttcaacatt 10532906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 7084075 - 7083942
Alignment:
Q  105 cgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatg 204  Q
    |||||||||||  || ||| |||||||||| ||| || | ||||||||||||||||||||||| |||| ||||| |||| |||| | ||||| ||||||     
T  7084075 cgcaccttataatctatgcgtgacttaagtcacgcactaatggcctatgcgcgagttaactcatgcaccttggccggtggtcagagctgaaggacaaata 7083976  T
Q  205 ttttttggtctttggtcagtttttcaacattcat 238  Q
    |||||||||| ||| |||||||| ||||| ||||    
T  7083975 ttttttggtccttgatcagttttccaacactcat 7083942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 237
Target Start/End: Complemental strand, 41758802 - 41758683
Alignment:
Q  118 ctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttggtcttt 217  Q
    |||||| |||||| ||| ||| |||| || |||||||||||||||||||| |||| |||||||||| ||||   ||||||||||| ||||||||| |  |    
T  41758802 ctctgcgtgacttgagtcacgcaccattgacctatgcgcgagttaactcatgcacgttggctggtggtcagaactgaagaacaaacgttttttggacggt 41758703  T
Q  218 ggtcagtttttcaacattca 237  Q
    |||||| |||||||| ||||    
T  41758702 ggtcaggttttcaaccttca 41758683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 28784837 - 28784741
Alignment:
Q  141 ccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||  | |||||||||||||||||| ||||  |||| ||||   ||||||||||| ||||||||| |||||||||||| |||||||||||    
T  28784837 ccactggcctgggtgcgagttaactcacgcacgttggtcggtggtcagaactgaagaacaaacgttttttggactttggtcagttattcaacattca 28784741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 40017199 - 40017154
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||    
T  40017199 tgaagaacaaacgttttttggtctgtggtcagtttttcaacattca 40017154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 1974388 - 1974431
Alignment:
Q  193 gaagaacaaatgttttttggtctttggtcagtttttcaacattc 236  Q
    |||||||||| |||||||||||| ||||||||||||||||||||    
T  1974388 gaagaacaaaagttttttggtctgtggtcagtttttcaacattc 1974431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 16100863 - 16100945
Alignment:
Q  104 acgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatc 186  Q
    |||||||||||| |  |||| |||||||||| ||| |||| | |||| ||||||||||||||||||||  ||||| |||||||    
T  16100863 acgcaccttataagtcctgcgtgacttaagtcacgcaccatttgcctgtgcgcgagttaactcacgcaagttggccggtgatc 16100945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 19401846 - 19401801
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||||    
T  19401846 tgaaaaacaaatattttttggtctgtggtcagtttttcaacattca 19401801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 25898653 - 25898750
Alignment:
Q  140 accactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    |||||||||||| ||| |||||||||||||||| |||||||||| || | ||| | ||||||| | ||||||| |  ||||||| |||| ||| ||||    
T  25898653 accactggcctaggcgtgagttaactcacgcacgttggctggtggtctgagttcatgaacaaacgatttttggacggtggtcaggtttttaaccttca 25898750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 1081992 - 1081930
Alignment:
Q  104 acgcaccttatatgctctgcatgacttaagtaacgtaccactg-gcctatgcgcgagttaact 165  Q
    |||||||| | | ||||||| |||||||||| ||| ||||||| |||||||||||||||||||    
T  1081992 acgcacctcacaagctctgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaact 1081930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 11125888 - 11125823
Alignment:
Q  104 acgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgc 170  Q
    |||||||||||| ||||||| |||||||||| | | | ||||||| | |||||||||||||||||||    
T  11125888 acgcaccttata-gctctgcgtgacttaagtcatgcatcactggcatgtgcgcgagttaactcacgc 11125823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 3461428 - 3461387
Alignment:
Q  194 aagaacaaatgttttttggtctttggtcagtttttcaacatt 235  Q
    ||||||||| |||||||||||| ||||||||| |||||||||    
T  3461428 aagaacaaacgttttttggtctgtggtcagttcttcaacatt 3461387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 129 - 237
Target Start/End: Original strand, 32935692 - 32935800
Alignment:
Q  129 ttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttggtctttggtcagttttt 228  Q
    |||||| ||| |||||| |||||||||||||||||||||||||| ||||| ||||  ||| | ||||||||||| |||||||||||||||||||||||||    
T  32935692 ttaagtcacgcaccacttgcctatgcgcgagttaactcacgcacgttggccggtggccagagctgaagaacaaacgttttttggtctttggtcagttttt 32935791  T
Q  229 caacattca 237  Q
    |||||||||    
T  32935792 caacattca 32935800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 49065654 - 49065520
Alignment:
Q  105 cgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatg 204  Q
    |||||||||||  || ||| |||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |||| |||| | ||||||||||| |    
T  49065654 cgcaccttataaactatgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcaccttggccggtggtcagagctgaagaacaaacg 49065555  T
Q  205 -ttttttggtctttggtcagtttttcaacattcat 238  Q
     |||||||||| ||| | |||||| ||||||||||    
T  49065554 tttttttggtccttgattagttttccaacattcat 49065520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 21713268 - 21713135
Alignment:
Q  105 cgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatg 204  Q
    |||||||||||  || ||| || ||||||| ||| |||| |||||||||| ||||||||||||||||   |||| |||| |||| | ||||||||||| |    
T  21713268 cgcaccttataatctatgcgtggcttaagtcacgcaccaatggcctatgcacgagttaactcacgcaacatggccggtggtcagagctgaagaacaaacg 21713169  T
Q  205 ttttttggtctttggtcagtttttcaacattcat 238  Q
    |||||||||| ||| |||||||| ||||||||||    
T  21713168 ttttttggtccttgatcagttttccaacattcat 21713135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 27761233 - 27761127
Alignment:
Q  105 cgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatg 204  Q
    |||||||||||  |||||| |||||||||| ||| |||||| |||||||||||||||||||||| ||| ||||| |||  ||||   | ||||||||| |    
T  27761233 cgcaccttataatctctgcgtgacttaagtcacgcaccactagcctatgcgcgagttaactcacacacgttggccggtagtcagaactcaagaacaaacg 27761134  T
Q  205 ttttttg 211  Q
    |||||||    
T  27761133 ttttttg 27761127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 14329020 - 14329101
Alignment:
Q  157 gagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttggtctttggtcagtttttcaacattcat 238  Q
    ||||||||||||| || |||| ||||| |||| | |||| ||||||  |||||||||||||| |||| ||||||||||||||    
T  14329020 gagttaactcacgtaccttggttggtggtcagagctgaaaaacaaacattttttggtctttgatcaggttttcaacattcat 14329101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 33161860 - 33161905
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||    
T  33161860 tgaagaacaaacgttttttggtctgtggtcagtttttcaacattca 33161905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 229
Target Start/End: Original strand, 38131442 - 38131546
Alignment:
Q  125 tgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttggtctttggtcagt 224  Q
    |||||||||| ||| ||||| ||||||||| ||||||||||||||||| || || |||| |||    ||||||||||| ||||||||| |  |||||||     
T  38131442 tgacttaagtcacgcaccacgggcctatgcacgagttaactcacgcacgttagccggtggtcacaactgaagaacaaacgttttttggacggtggtcagg 38131541  T
Q  225 ttttc 229  Q
    |||||    
T  38131542 ttttc 38131546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 42039033 - 42039105
Alignment:
Q  140 accactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttgg 212  Q
    ||||||||||| ||||||||||||||||||||| ||||| |||| ||||   ||||||||| | |||||||||    
T  42039033 accactggcctgtgcgcgagttaactcacgcacgttggccggtggtcagaactgaagaacagacgttttttgg 42039105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 1227954 - 1227913
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaaca 233  Q
    ||||||||||| |||||||||||| |||||||||||||||||    
T  1227954 tgaagaacaaacgttttttggtctgtggtcagtttttcaaca 1227913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 32935629 - 32935678
Alignment:
Q  47 tgctcttcctccagcacatttcgctcgcgccttgcagtcattcctaatat 96  Q
    ||||||||| |||||||||||||||||| || ||||| ||||||||||||    
T  32935629 tgctcttcccccagcacatttcgctcgcaccctgcagccattcctaatat 32935678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 46814084 - 46814129
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    |||||||||||  ||||||||||| |||||||||||||||||||||    
T  46814084 tgaagaacaaacattttttggtctgtggtcagtttttcaacattca 46814129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 47043835 - 47043790
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| |||||||||||| |||||| ||||||||||||||    
T  47043835 tgaagaacaaacgttttttggtctgtggtcaatttttcaacattca 47043790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 31823039 - 31823119
Alignment:
Q  152 tgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttggtctttggtcagtttttcaac 232  Q
    |||| |||||||||||||||| ||||| |||| ||||   ||||||||||| ||||||||| |  ||||||| ||||||||    
T  31823039 tgcgtgagttaactcacgcacgttggccggtggtcagaactgaagaacaaacgttttttggacggtggtcaggttttcaac 31823119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 2777957 - 2778024
Alignment:
Q  104 acgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgca 171  Q
    |||||||||||| | ||||| | |||||||| ||   |||||||||| ||||||||||||||||||||    
T  2777957 acgcaccttataagttctgcgtaacttaagtcacacgccactggcctgtgcgcgagttaactcacgca 2778024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 31936426 - 31936360
Alignment:
Q  104 acgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgca 171  Q
    ||||||||||| |||| ||  |||||||||| ||| |||||||||||  |||||||||||||||||||    
T  31936426 acgcaccttat-tgctttgtgtgacttaagtcacgcaccactggcctgggcgcgagttaactcacgca 31936360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 36174426 - 36174383
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacatt 235  Q
    ||||||| ||| |||||||||||| |||||||||||||||||||    
T  36174426 tgaagaagaaacgttttttggtctgtggtcagtttttcaacatt 36174383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 12572598 - 12572643
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| |||||||||||| ||||| |||||| ||||||||    
T  12572598 tgaagaacaaacgttttttggtctgtggtctgttttttaacattca 12572643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 28796852 - 28796897
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    |||||||||||  ||||||||| | |||||||||||||||||||||    
T  28796852 tgaagaacaaacattttttggtatgtggtcagtttttcaacattca 28796897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 210
Target Start/End: Complemental strand, 9243020 - 9242917
Alignment:
Q  107 caccttatatgctctgcatgacttaagtaacgtaccactg-gcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgt 205  Q
    |||||||||  |||||| |||||||||| ||| ||||||| |||| | ||||||||||||||||||  ||||| |||  ||||   ||||||||||| ||    
T  9243020 caccttataatctctgcgtgacttaagtcacgcaccactgagcct-tccgcgagttaactcacgcaagttggccggtagtcagaactgaagaacaaacgt 9242922  T
Q  206 ttttt 210  Q
    |||||    
T  9242921 ttttt 9242917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 47020005 - 47020045
Alignment:
Q  42 aattttgctcttcctccagcacatttcgctcgcgccttgca 82  Q
    |||||||||||||  ||||||||||||||||||||| ||||    
T  47020005 aattttgctcttcacccagcacatttcgctcgcgccctgca 47020045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 52789392 - 52789440
Alignment:
Q  118 ctctgcatgacttaagtaacgtaccactg-gcctatgcgcgagttaact 165  Q
    |||||| |||||||||| ||| ||||||| |||||||||||||||||||    
T  52789392 ctctgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaact 52789440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0861 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 230
Target Start/End: Complemental strand, 3831 - 3703
Alignment:
Q  102 taacgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaa 201  Q
    |||| ||||||||| ||| ||  |||||||||| ||  ||||||||||||||||||||||||||||||||| ||||| |||| |||  | | ||||||||    
T  3831 taacacaccttataagctttgtctgacttaagtcacacaccactggcctatgcgcgagttaactcacgcaccttggccggtggtcaaagctaaagaacaa 3732  T
Q  202 atgttttttggtctttggtcagtttttca 230  Q
    | |||||||||||||||||||||||||||    
T  3731 acgttttttggtctttggtcagtttttca 3703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 102 - 237
Target Start/End: Complemental strand, 23542849 - 23542714
Alignment:
Q  102 taacgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaa 201  Q
    |||| |||| |||| ||||||| |||||||| | ||| |||||||||||||||||||||||||||| |||| ||||  |||| ||||   ||||||||||    
T  23542849 taacacaccgtataagctctgcgtgacttaattcacgcaccactggcctatgcgcgagttaactcatgcacgttggtcggtggtcagaactgaagaacaa 23542750  T
Q  202 atgttttttggtctttggtcagtttttcaacattca 237  Q
    |  |||||| ||||||||||||||||||||||||||    
T  23542749 acatttttttgtctttggtcagtttttcaacattca 23542714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 43693668 - 43693535
Alignment:
Q  105 cgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatg 204  Q
    |||||||||||  || ||  |||||||| | ||| |||| |||| ||||||||||| |||||||||||  |||| |||| |||| | ||||||||||| |    
T  43693668 cgcaccttataatctatgtgtgacttaattcacgcaccaatggcttatgcgcgagtaaactcacgcaccatggccggtggtcagagctgaagaacaaacg 43693569  T
Q  205 ttttttggtctttggtcagtttttcaacattcat 238  Q
    |||||||||| ||| |||||||| ||||||||||    
T  43693568 ttttttggtccttgatcagttttccaacattcat 43693535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 237
Target Start/End: Complemental strand, 34471695 - 34471564
Alignment:
Q  105 cgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatg 204  Q
    |||||||||||  || ||| |||||||||| ||| |||| |||| ||||||||||||||||||||||| ||||| |||| | ||   ||||||||||| |    
T  34471695 cgcaccttataaactatgcgtgacttaagtcacgcaccattggc-tatgcgcgagttaactcacgcacgttggccggtggttagaactgaagaacaaacg 34471597  T
Q  205 ttttttggtctttggtcagtttttcaacattca 237  Q
    |||||||| |  ||||||| |||||||| ||||    
T  34471596 ttttttggacggtggtcaggttttcaaccttca 34471564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 23542941 - 23542887
Alignment:
Q  42 aattttgctcttcctccagcacatttcgctcgcgccttgcagtcattcctaatat 96  Q
    |||||||||||||  ||||||||||||||||||||| ||||| ||||||||||||    
T  23542941 aattttgctcttcacccagcacatttcgctcgcgccctgcagccattcctaatat 23542887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 4639844 - 4639886
Alignment:
Q  191 ttgaagaacaaatgttttttggtctttggtcagtttttcaaca 233  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  4639844 ttgaagaacaaatgttttttggtctgtgatcagtttttcaaca 4639886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 43635340 - 43635385
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| |||||||| | | |||||||||||||||||||||    
T  43635340 tgaagaacaaacgttttttgatttgtggtcagtttttcaacattca 43635385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 105 - 237
Target Start/End: Original strand, 48086826 - 48086958
Alignment:
Q  105 cgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatg 204  Q
    |||||||||||  ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||   |||  |||||| |    
T  48086826 cgcaccttataacctctgcatgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgttggccggtggtcagaactgactaacaaacg 48086925  T
Q  205 ttttttggtctttggtcagtttttcaacattca 237  Q
    |||||||| |  ||||||| |||||||| ||||    
T  48086926 ttttttggacggtggtcaggttttcaaccttca 48086958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 237
Target Start/End: Original strand, 25574830 - 25574942
Alignment:
Q  125 tgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttggtctttggtcagt 224  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||| ||||  |||| ||||   ||||||||||| ||||||||| |  |||||||     
T  25574830 tgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgttggtcggtggtcagaactgaagaacaaacgttttttggacggtggtcagg 25574929  T
Q  225 ttttcaacattca 237  Q
    |||||||| ||||    
T  25574930 ttttcaaccttca 25574942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 237
Target Start/End: Original strand, 39415329 - 39415461
Alignment:
Q  105 cgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatg 204  Q
    |||||||||||  |||||| |||||||||| ||| ||||||||||| |||| |||||||||||||||| ||||| | || | ||   ||||||||||| |    
T  39415329 cgcaccttataacctctgcgtgacttaagtcacgcaccactggcctgtgcgtgagttaactcacgcacgttggccgatggttagaactgaagaacaaacg 39415428  T
Q  205 ttttttggtctttggtcagtttttcaacattca 237  Q
    |||||||| |  ||||||| |||||||| ||||    
T  39415429 ttttttggacggtggtcaggttttcaaccttca 39415461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 2325458 - 2325413
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||    
T  2325458 tgaagaacaaacgttttttggtctgtggtcagtttttcaacattca 2325413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 8628467 - 8628545
Alignment:
Q  158 agttaactcacgcacattggctggtgatcagtgttgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||||||  | ||| |||||||||   ||||||||||| | ||||| ||||||||||||||||||||||||||    
T  8628467 agttaactcacgcaggt-ggccggtgatcagaactgaagaacaaaggatttttagtctttggtcagtttttcaacattca 8628545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 218
Target Start/End: Original strand, 6462978 - 6463092
Alignment:
Q  104 acgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaat 203  Q
    |||||||||||| ||| ||  |||||||||| ||| ||||||||| | || | |||||||||||||||  ||||| |||| | |  | | ||||||||||    
T  6462978 acgcaccttataagctttgtgtgacttaagtcacgcaccactggcatgtgtgtgagttaactcacgcaagttggccggtggttaaagctcaagaacaaat 6463077  T
Q  204 gttttttggtctttg 218  Q
    ||||||||| |||||    
T  6463078 gttttttggactttg 6463092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 218
Target Start/End: Complemental strand, 6755819 - 6755705
Alignment:
Q  104 acgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaat 203  Q
    |||||||||||| ||| ||  |||||||||| ||  ||||||||| | ||||||||||||||||||||  ||||| |||| | || | | ||||||| |     
T  6755819 acgcaccttataagctttgtgtgacttaagtcacacaccactggcatgtgcgcgagttaactcacgcaagttggccggtggttagagctcaagaacacac 6755720  T
Q  204 gttttttggtctttg 218  Q
    ||||||||| |||||    
T  6755719 gttttttggactttg 6755705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 42947596 - 42947641
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| |||||||||| | |||||||||||||||||||||    
T  42947596 tgaagaacaaacgttttttggtatgtggtcagtttttcaacattca 42947641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 44833656 - 44833701
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| |||||||||| | |||||||||||||||||||||    
T  44833656 tgaagaacaaacgttttttggtatgtggtcagtttttcaacattca 44833701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 53824523 - 53824568
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| |||||||||| | |||||||||||||||||||||    
T  53824523 tgaagaacaaacgttttttggtttgtggtcagtttttcaacattca 53824568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 16967826 - 16967781
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| ||||||| || | |||||||||||||||||||||    
T  16967826 tgaagaacaaacgtttttttgtttgtggtcagtttttcaacattca 16967781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 50561439 - 50561492
Alignment:
Q  117 gctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgc 170  Q
    |||| ||||||||||||| | | |||||| |||| |||||||||||||||||||    
T  50561439 gctcagcatgacttaagtcatgcaccacttgcctgtgcgcgagttaactcacgc 50561492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 32211200 - 32211240
Alignment:
Q  197 aacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    |||| ||||||||||| |||||||||| |||||||||||||    
T  32211200 aacacatgttttttggactttggtcagcttttcaacattca 32211240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 13312567 - 13312702
Alignment:
Q  102 taacgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaa 201  Q
    |||||||||||||| ||||||| |||||||||| ||| |||||||||||  || |||||||||||||| || ||||| | || ||||   ||||||||||    
T  13312567 taacgcaccttataagctctgcgtgacttaagtcacgaaccactggcctgggcacgagttaactcacgtacgttggccgatggtcagaactgaagaacaa 13312666  T
Q  202 atgttttttggtctttggtcagtttttcaacattca 237  Q
    |  |||||||| || ||||| ||| |||||||||||    
T  13312667 acattttttggactatggtcggttattcaacattca 13312702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 237
Target Start/End: Original strand, 319208 - 319340
Alignment:
Q  105 cgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatg 204  Q
    |||||||||||  |||||  |||||||||| | | |||||||| |||||||||||||||||||||||| |||| ||||| ||||   ||||||||||| |    
T  319208 cgcaccttataacctctgtgtgacttaagtcatgcaccactggtctatgcgcgagttaactcacgcacgttgggtggtggtcagaactgaagaacaaacg 319307  T
Q  205 ttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||    ||||||| |||||||| ||||    
T  319308 ttttttggatggtggtcaggttttcaaccttca 319340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 23912354 - 23912287
Alignment:
Q  104 acgcaccttatatgctctgcatgacttaagtaacgtaccactggcctatgcgcgagttaactcacgca 171  Q
    |||||||||||| ||||||| |||||||||| | | ||||||||| | |||||||||||| |||||||    
T  23912354 acgcaccttataagctctgcgtgacttaagtcatgcaccactggcatgtgcgcgagttaattcacgca 23912287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 14153585 - 14153630
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||||    
T  14153585 tgaagaacaaacgttttttggtctgcggtcagtttttcaacattca 14153630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 14830623 - 14830668
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| || ||||||||| |||||||||||||||||||||    
T  14830623 tgaagaacaaacgtgttttggtctgtggtcagtttttcaacattca 14830668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 24173628 - 24173673
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    |||||||||||  ||||||| |||||||||||||||||||||||||    
T  24173628 tgaagaacaaacattttttgatctttggtcagtttttcaacattca 24173673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 35053538 - 35053583
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| |||| ||||||| |||||||||||||||||||||    
T  35053538 tgaagaacaaacgtttgttggtctgtggtcagtttttcaacattca 35053583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 16444498 - 16444543
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    |||||||||||  ||||| ||||| |||||||||||||||||||||    
T  16444498 tgaagaacaaacatttttcggtctgtggtcagtttttcaacattca 16444543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 30633435 - 30633476
Alignment:
Q  42 aattttgctcttcctccagcacatttcgctcgcgccttgcag 83  Q
    ||||||||||||| ||||||||||||||||||| | ||||||    
T  30633435 aattttgctcttcatccagcacatttcgctcgcactttgcag 30633476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 237
Target Start/End: Original strand, 25584 - 25715
Alignment:
Q  107 caccttatatgctctgcatgacttaagtaacgtaccactg-gcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgt 205  Q
    |||||||||  || ||| |||||||||  |||||||||   |||| ||||||||||||||||||||  ||||| |||| ||||   ||||||||||| ||    
T  25584 caccttataatctatgcgtgacttaaggcacgtaccacccagcctttgcgcgagttaactcacgcaagttggccggtggtcagaactgaagaacaaacgt 25683  T
Q  206 tttttggtctttggtcagtttttcaacattca 237  Q
    |||||   ||||| |||| |||||||||||||    
T  25684 ttttttcactttgatcaggttttcaacattca 25715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1455 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1455
Description:

Target: scaffold1455; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 221 - 176
Alignment:
Q  192 tgaagaacaaatgttttttggtctttggtcagtttttcaacattca 237  Q
    ||||||||||| ||||||| |||| |||||||||||||||||||||    
T  221 tgaagaacaaacgttttttagtctgtggtcagtttttcaacattca 176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 3995 - 4088
Alignment:
Q  118 ctctgcatgacttaagtaacgtaccactg-gcctatgcgcgagttaactcacgcacattggctggtgatcagtgttgaagaacaaatgtttttt 210  Q
    |||||| |||||||||| ||| ||||||| |||| | ||||||||||||||||||  ||| | |||| ||||   ||||||||||| |||||||    
T  3995 ctctgcgtgacttaagtcacgcaccactgagcctttccgcgagttaactcacgcaagttgaccggtggtcagaactgaagaacaaacgtttttt 4088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 39128 - 39168
Alignment:
Q  47 tgctcttcctccagcacatttcgctcgcgccttgcagtcat 87  Q
    ||||||||||||| |||||||||||||| || |||||||||    
T  39128 tgctcttcctccaacacatttcgctcgcaccctgcagtcat 39168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University