View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_81 (Length: 249)
Name: NF1720_low_81
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_81 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 8857591 - 8857351
Alignment:
| Q |
1 |
gtggaaagtaacttatacaatgtacatgatacaaaatttatctcacttgtgtaccataaaaccggttttgaaatttaaggctaaaataatattaaaattc |
100 |
Q |
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| T |
8857591 |
gtggaaagtaacttatacaatgtacatgatacaaaatttatctcacttgtgtaccataaaaccggttttgaaatttaaggctaaaataatattaaaattc |
8857492 |
T |
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| Q |
101 |
annnnnnnnatcatttaatataacaataatgtaagactattagaaatagaatacaaattattttgattcagtatttaactattttaagcctctcttatga |
200 |
Q |
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| T |
8857491 |
attttttttatcatttaatataacaataatgtaagactattagaaatagaatacaaattattttgattcagtatttaactattttaagcctctcttatga |
8857392 |
T |
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| Q |
201 |
acaaaagtgagttgaaaattacag-tttttatttatattctt |
241 |
Q |
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| T |
8857391 |
ac-aaagtgagttgaaaattacagttttttatttattttctt |
8857351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 26979708 - 26979744
Alignment:
| Q |
25 |
catgatacaaaatttatctcacttgtgtaccataaaa |
61 |
Q |
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| T |
26979708 |
catgatacaagatttatctcacttgtgcaccataaaa |
26979744 |
T |
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