View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_84 (Length: 249)
Name: NF1720_low_84
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_84 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 17455464 - 17455227
Alignment:
| Q |
11 |
cacagaaatccttaattacattcttcggaaaatgctgcaaaatccataataagcacatcaaagaagtaacatttaatagttgtaaattatgaaaactgaa |
110 |
Q |
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| T |
17455464 |
cacagaaatctttaattacattcttcggaaaatgctgtaaaatccataataagcacatcaaagaagtaacatttaatagttgtaaattatgaaaattgaa |
17455365 |
T |
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| Q |
111 |
attgcaacaactcgacatgtttagagaaatacattggagagtcacttaataaaccttttgcgtatgataaaaaataaataaagagattaataaagaatcg |
210 |
Q |
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| T |
17455364 |
attgcaacaacttgacatgtttagagcaataca-tggagaatcacttaataaaccttttgcgtatgataaaaaataaataaagcgattaataaagaatcg |
17455266 |
T |
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| Q |
211 |
atataaagaattataccaattcattgggtctataaagac |
249 |
Q |
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| T |
17455265 |
atataaagaattataccaattcattgggtctataaagac |
17455227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 17393368 - 17393435
Alignment:
| Q |
55 |
cataataagcacatcaaagaagtaacatttaatagttgtaaattatgaaaactgaaattgcaacaact |
122 |
Q |
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| T |
17393368 |
cataataagtacatcaaagaagtaacatgaaatgatcgtaagttaagaaaactaaaattgcaacaact |
17393435 |
T |
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