View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_85 (Length: 248)
Name: NF1720_low_85
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_85 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 45800925 - 45800693
Alignment:
| Q |
16 |
ataaatgatagatactgcgtgaagggaaaacaacatatgcatgacagcatgagcattgaacagattgggactttttaggagtataacattgcttccactt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
45800925 |
ataaatgatagatactgcgtgaagggaaaacaacatatgcatgacagcatgagcattgagcagattgggactttttatgagtataacattgcttccactt |
45800826 |
T |
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| Q |
116 |
catttcctctatttaattctcttccaccnnnnnnnggaagaaaacataactagtaccttagcgagaaataggccccgataaattgacgatacgataacta |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45800825 |
catttcctctatttaattctcttccaccaaaaaaaggaagaaaacataactaataccttagcgagaaataggccacgataaattgacgatacgataacta |
45800726 |
T |
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| Q |
216 |
gactgtctcgtgtatatatatctcctgccgtta |
248 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
45800725 |
gactgtctcgtgtatatatatctcctgccgtta |
45800693 |
T |
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