View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1720_low_86 (Length: 244)
Name: NF1720_low_86
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_86 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 27026608 - 27026833
Alignment:
| Q |
1 |
acatgcagtattatgggaacatcatggtgagcatttttctcaaatttcatagtactactaatacatatccaggcaaaaaatgatacagggccaaaacgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27026608 |
acatgcagtattatgggaacatcatggtgagcatttttctcaaatttcatagtactactaatacatatccaggcaaaaaatgatacagggccaaaacgtt |
27026707 |
T |
|
| Q |
101 |
ctaatctattaccttggtggcttacagattcaaagcaacttaactcaccattaaaacagctcatagacttaaaggcctccaccacggtagaaaaacagac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27026708 |
ctaatctattaccttggtggcttacagattcaaagcaacttaactcaccattaaaacagctcatagacttaaaggcctccaccacggtagaaaaacagac |
27026807 |
T |
|
| Q |
201 |
aaaaccaaaccccttgcttgtccctt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
27026808 |
aaaaccaaaccccttgcttgtccctt |
27026833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University