View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1720_low_89 (Length: 243)

Name: NF1720_low_89
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1720_low_89
NF1720_low_89
[»] chr1 (6 HSPs)
chr1 (157-205)||(43842233-43842281)
chr1 (1-77)||(52652803-52652879)
chr1 (157-205)||(43842013-43842061)
chr1 (6-46)||(43842384-43842424)
chr1 (22-77)||(5609983-5610039)
chr1 (5-45)||(5851713-5851753)
[»] chr3 (2 HSPs)
chr3 (1-77)||(16973080-16973157)
chr3 (14-77)||(34145718-34145782)
[»] scaffold0031 (1 HSPs)
scaffold0031 (1-79)||(77336-77415)
[»] chr5 (2 HSPs)
chr5 (3-78)||(10161373-10161448)
chr5 (1-77)||(26916890-26916966)
[»] chr7 (3 HSPs)
chr7 (1-77)||(32651958-32652035)
chr7 (22-77)||(38198320-38198377)
chr7 (5-46)||(7174210-7174251)
[»] chr8 (2 HSPs)
chr8 (1-77)||(14847551-14847627)
chr8 (1-47)||(35063689-35063735)
[»] chr4 (2 HSPs)
chr4 (1-35)||(31484-31518)
chr4 (1-77)||(38380244-38380321)


Alignment Details
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 43842281 - 43842233
Alignment:
Q  157 tgtagaaaggagtcaccgtcattaagaatgaaatcaagttttgctaaaa 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43842281 tgtagaaaggagtcaccgtcattaagaatgaaatcaagttttgctaaaa 43842233  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 52652879 - 52652803
Alignment:
Q  1 actacacaagttccaagatatttatactatatttgatttccttaaccggtgtccaggggcactagttaacattttcc 77  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||  ||| || ||||||||||||||||||||||    
T  52652879 actacacaagttccaagatacttgtactatatttggtttccttaactagtgccccggggcactagttaacattttcc 52652803  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 43842061 - 43842013
Alignment:
Q  157 tgtagaaaggagtcaccgtcattaagaatgaaatcaagttttgctaaaa 205  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  43842061 tgtagaaaggaatcaacgtcattaagaatgaaatcaagttttgctaaaa 43842013  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 43842424 - 43842384
Alignment:
Q  6 acaagttccaagatatttatactatatttgatttccttaac 46  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  43842424 acaagttccaagatacttatattatatttgatttccttaac 43842384  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 5609983 - 5610039
Alignment:
Q  22 ttatactatatttgatttccttaaccggtg-tccaggggcactagttaacattttcc 77  Q
    |||||||||||||| ||| ||||||  ||| ||| ||||||||||||||||||||||    
T  5609983 ttatactatatttggttttcttaacaagtgctcctggggcactagttaacattttcc 5610039  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 5851753 - 5851713
Alignment:
Q  5 cacaagttccaagatatttatactatatttgatttccttaa 45  Q
    ||||||||| || ||| ||||||||||||||||||||||||    
T  5851753 cacaagttctaaaatacttatactatatttgatttccttaa 5851713  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 16973080 - 16973157
Alignment:
Q  1 actacacaagttccaagatatttatactatatttgatttccttaaccggtgt-ccaggggcactagttaacattttcc 77  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||  |||| || |||||||| |||||||||||||    
T  16973080 actacacaagttccaagatacttatactatatttggtttccttaactagtgtcccgggggcactggttaacattttcc 16973157  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 34145718 - 34145782
Alignment:
Q  14 caagatatttatactatatttgatttccttaaccggtg-tccaggggcactagttaacattttcc 77  Q
    ||||||||| |||||||||||||||| ||||| |  || |||||||||||| ||||| |||||||    
T  34145718 caagatattcatactatatttgattttcttaaacaatgctccaggggcacttgttaatattttcc 34145782  T

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Target: scaffold0031 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 77415 - 77336
Alignment:
Q  1 actacacaagttccaagatatttatactatatttgatttccttaaccggtgtccagg-ggcactagttaacattttccaa 79  Q
    |||||||||||| ||||||| | |||||||||||||||||||||||| ||| || || |||||| |||||||||||||||    
T  77415 actacacaagtttcaagatactcatactatatttgatttccttaaccagtgccccggaggcactcgttaacattttccaa 77336  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 10161373 - 10161448
Alignment:
Q  3 tacacaagttccaagatatttatactatatttgatttccttaaccggtgtccaggggcactagttaacattttcca 78  Q
    ||||||||||||||| || |||||||||||||| ||||||||||  ||| || ||||| |||||||||||||||||    
T  10161373 tacacaagttccaaggtacttatactatatttggtttccttaactagtgccctggggcgctagttaacattttcca 10161448  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 26916890 - 26916966
Alignment:
Q  1 actacacaagttccaagatatttatactatatttgatttccttaaccggtgtccaggggcactagttaacattttcc 77  Q
    |||||||||||| |||  || ||||| |||||||| ||||||| ||  ||||||  || ||||||||||||||||||    
T  26916890 actacacaagtttcaaagtacttatattatatttggtttccttgacgagtgtcccaggacactagttaacattttcc 26916966  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 32651958 - 32652035
Alignment:
Q  1 actacacaagttccaagatatttatactatatttgatttccttaaccggtgtccaggg-gcactagttaacattttcc 77  Q
    |||||||||||| ||||| | |||||||||||||| |||||||||||||||||| ||| |||||  ||||||||||||    
T  32651958 actacacaagtttcaagacacttatactatatttggtttccttaaccggtgtcccgggagcacttattaacattttcc 32652035  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 38198320 - 38198377
Alignment:
Q  22 ttatactatatttgatttccttaaccggtgtccag--gggcactagttaacattttcc 77  Q
    |||||||||||||||||||||||||| ||| || |  |||||||||||||||||||||    
T  38198320 ttatactatatttgatttccttaaccagtgcccggccgggcactagttaacattttcc 38198377  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 7174210 - 7174251
Alignment:
Q  5 cacaagttccaagatatttatactatatttgatttccttaac 46  Q
    |||||||||||||||||| |||||||||||| ||||| ||||    
T  7174210 cacaagttccaagatattcatactatatttggtttccataac 7174251  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 14847627 - 14847551
Alignment:
Q  1 actacacaagttccaagatatttatactatatttgatttccttaaccggtgtccaggggcactagttaacattttcc 77  Q
    ||||||||||||| |||| | |||||||||||||| ||||||||||| |||||| |||  ||||||||||| |||||    
T  14847627 actacacaagttctaagacacttatactatatttggtttccttaaccagtgtcccgggcgactagttaacaatttcc 14847551  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35063735 - 35063689
Alignment:
Q  1 actacacaagttccaagatatttatactatatttgatttccttaacc 47  Q
    ||||||||||||||||| || |||||||||||||| |||||||||||    
T  35063735 actacacaagttccaaggtacttatactatatttggtttccttaacc 35063689  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 31518 - 31484
Alignment:
Q  1 actacacaagttccaagatatttatactatatttg 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  31518 actacacaagttccaagatatttttactatatttg 31484  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 38380321 - 38380244
Alignment:
Q  1 actacacaagttccaagatatttatactatatttgatttccttaaccggtgtccagggg-cactagttaacattttcc 77  Q
    ||||||||| ||||||  || |||||||||||||| ||||||||||  |||||| ||||  ||||||||| |||||||    
T  38380321 actacacaaattccaaagtacttatactatatttggtttccttaactagtgtcccggggatactagttaatattttcc 38380244  T

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