View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1720_low_90 (Length: 242)

Name: NF1720_low_90
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1720_low_90
NF1720_low_90
[»] chr3 (13 HSPs)
chr3 (2-226)||(9358749-9358975)
chr3 (14-137)||(47820896-47821022)
chr3 (7-136)||(28934741-28934868)
chr3 (2-136)||(31525363-31525495)
chr3 (72-130)||(28956951-28957009)
chr3 (2-136)||(43073046-43073178)
chr3 (2-63)||(52076136-52076197)
chr3 (76-136)||(53349401-53349460)
chr3 (2-142)||(20701139-20701280)
chr3 (76-136)||(55166896-55166955)
chr3 (6-61)||(10454357-10454412)
chr3 (1-63)||(44656224-44656286)
chr3 (76-136)||(8431491-8431549)
[»] chr8 (12 HSPs)
chr8 (72-184)||(30836208-30836320)
chr8 (1-129)||(5200481-5200609)
chr8 (2-136)||(22839250-22839386)
chr8 (2-130)||(38086414-38086544)
chr8 (6-136)||(40930834-40930961)
chr8 (1-118)||(24200621-24200737)
chr8 (5-62)||(13959222-13959279)
chr8 (14-147)||(25829276-25829410)
chr8 (76-136)||(10124859-10124920)
chr8 (5-54)||(584138-584187)
chr8 (1-53)||(14160641-14160692)
chr8 (2-63)||(30836128-30836193)
[»] chr1 (14 HSPs)
chr1 (72-175)||(43268675-43268778)
chr1 (2-147)||(19472786-19472932)
chr1 (2-136)||(12172954-12173086)
chr1 (73-226)||(43460602-43460761)
chr1 (2-136)||(26990601-26990733)
chr1 (76-137)||(41955963-41956024)
chr1 (76-129)||(47028937-47028990)
chr1 (9-145)||(8462976-8463113)
chr1 (2-61)||(38548750-38548809)
chr1 (2-51)||(28447802-28447851)
chr1 (76-136)||(46757306-46757365)
chr1 (1-60)||(42442007-42442065)
chr1 (76-136)||(31833895-31833953)
chr1 (2-54)||(43460785-43460837)
[»] chr4 (7 HSPs)
chr4 (2-226)||(16662307-16662535)
chr4 (6-130)||(16572074-16572198)
chr4 (2-130)||(32183282-32183413)
chr4 (2-142)||(25641269-25641413)
chr4 (2-62)||(15186981-15187041)
chr4 (2-60)||(47571571-47571629)
chr4 (83-135)||(42390855-42390906)
[»] chr7 (12 HSPs)
chr7 (2-136)||(46691845-46691981)
chr7 (14-147)||(49035865-49036001)
chr7 (7-136)||(36615808-36615934)
chr7 (1-135)||(33320704-33320833)
chr7 (76-129)||(41702870-41702923)
chr7 (5-130)||(31424775-31424902)
chr7 (5-62)||(1039066-1039123)
chr7 (5-62)||(30655601-30655658)
chr7 (5-63)||(42598057-42598115)
chr7 (76-136)||(22197668-22197727)
chr7 (76-136)||(22240094-22240153)
chr7 (1-53)||(29706026-29706077)
[»] chr2 (3 HSPs)
chr2 (15-136)||(41378216-41378332)
chr2 (6-137)||(14732344-14732474)
chr2 (1-137)||(41419616-41419753)
[»] chr6 (10 HSPs)
chr6 (72-130)||(15859100-15859158)
chr6 (9-142)||(33984747-33984887)
chr6 (1-136)||(10246910-10247044)
chr6 (2-62)||(6575797-6575857)
chr6 (5-136)||(11546765-11546896)
chr6 (76-136)||(33112791-33112851)
chr6 (5-52)||(14459932-14459979)
chr6 (1-53)||(21423790-21423841)
chr6 (2-54)||(33112715-33112767)
chr6 (72-136)||(34761160-34761224)
[»] chr5 (9 HSPs)
chr5 (7-136)||(819134-819261)
chr5 (75-136)||(2292161-2292223)
chr5 (77-118)||(9931877-9931918)
chr5 (8-61)||(22887284-22887337)
chr5 (14-147)||(23172985-23173118)
chr5 (76-136)||(10431056-10431116)
chr5 (2-52)||(9597754-9597804)
chr5 (22-62)||(3677809-3677849)
chr5 (8-60)||(25539896-25539947)
[»] scaffold0209 (1 HSPs)
scaffold0209 (5-54)||(12898-12947)


Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 9358749 - 9358975
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnntaaagaaggggaaatcggttgccgcacaaac 101  Q
    ||||||||||| ||||||| |||||||||||||| |||||| ||||||||||| ||||||||        | ||||||||||||||||||||||||||||    
T  9358749 aatcggcaaaatattattacccaacaagcccgtgcgagaagtactaataagcttgggtggagaaaaaaacatagaaggggaaatcggttgccgcacaaac 9358848  T
Q  102 accggctcgaacaaaaatccctttaaaaaccacccacaaaccaaggtgccgcctataaacgtaacaccgtaaacaccaggaaagcacccaaaa-caaaaa 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9358849 accggctcgaacaaaaacccctttaaaaaccacccacaaaccaagatgccgcctataaacgtaacaccgtaaacaccaggaaagcacccaaaaccaaaaa 9358948  T
Q  201 aggca-caagcaatgaggctgaagtat 226  Q
    ||||| |||||||||||||||||||||    
T  9358949 aggcaccaagcaatgaggctgaagtat 9358975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 47821022 - 47820896
Alignment:
Q  14 attattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnnt---aaagaaggggaaatcggttgccgcacaaacaccggctcg 110  Q
    ||||||| ||||||||||||||  ||| ||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||    
T  47821022 attattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaggaaaaaaatacaaagaaggggaaatcggttgccgcacaaacaccggctcg 47820923  T
Q  111 aacaaaaatccctttaaaaaccaccca 137  Q
    |||||||| ||||||||||||||||||    
T  47820922 aacaaaaacccctttaaaaaccaccca 47820896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 28934741 - 28934868
Alignment:
Q  7 gcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnntaaagaaggggaaatcggttgccgcacaaacaccgg 106  Q
    |||||| ||||||| ||||||||||||||  ||||||||||||||||||||||||||        ||| ||||||||||||||||||  |||||||||||    
T  28934741 gcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggagaaaaaacaaaacaaggggaaatcggttgcc--acaaacaccgg 28934838  T
Q  107 ctcgaacaaaaatccctttaaaaaccaccc 136  Q
    |||||||||||| ||||| |||||||||||    
T  28934839 ctcgaacaaaaaccccttaaaaaaccaccc 28934868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 136
Target Start/End: Complemental strand, 31525495 - 31525363
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnntaaagaaggggaaatcggttgccgcacaaac 101  Q
    ||||||||||| ||||||| |||||||||| |||  ||||||||||||||||| |||||||         ||| |||||||||||||||||| |||||||    
T  31525495 aatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataagcttgggtggaaaaaaaac-aaacaaggggaaatcggttgccacacaaac 31525397  T
Q  102 accggctcgaacaaaaatccctttaaaaaccaccc 136  Q
    | ||||||||||||||| ||| |||||||||||||    
T  31525396 aacggctcgaacaaaaa-ccccttaaaaaccaccc 31525363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 28957009 - 28956951
Alignment:
Q  72 aaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaa 130  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  28957009 aaagaaggggaaatcggttgccacacaaacaccggctcgaacaaaaacccctttaaaaa 28956951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 43073046 - 43073178
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnntaaagaaggggaaatcggttgccgcacaaac 101  Q
    ||||||||||| ||||||| ||||||||||||||  ||| ||||||||||||| |||||||         | | ||||||||||||||||||  | ||||    
T  43073046 aatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtggaaaaaaaagaatacaaggggaaatcggttgcctta-aaac 43073144  T
Q  102 accggctcgaacaaaaatccctttaaaaaccaccc 136  Q
    ||||||||||||||||| ||| |||||||||||||    
T  43073145 accggctcgaacaaaaa-ccccttaaaaaccaccc 43073178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 52076197 - 52076136
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggag 63  Q
    ||||||||||| |||| || |||||||||||||| |||||||||||||||||||||||||||    
T  52076197 aatcggcaaaatattactaaccaacaagcccgtgcgagaagcactaataagctcgggtggag 52076136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 53349460 - 53349401
Alignment:
Q  76 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 136  Q
    ||||| |||||||||||||||||||||||||||| |||||||| ||| |||||||||||||    
T  53349460 aagggaaaatcggttgccgcacaaacaccggctcaaacaaaaa-ccccttaaaaaccaccc 53349401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 20701280 - 20701139
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnnta--aagaaggggaaatcggttgccgcacaa 99  Q
    |||| |||||| ||||||| ||||| |||||||   ||||||||||||||||||||||| ||       ||  || |||||||||||| ||||| |||||    
T  20701280 aatcagcaaaatattattaaccaacgagcccgtacaagaagcactaataagctcgggtgaagaaaaaaatacaaacaaggggaaatcgattgccacacaa 20701181  T
Q  100 acaccggctcgaacaaaaatccctttaaaaaccacccacaaac 142  Q
      || |||||||||||||| ||||| |||||||||||| ||||    
T  20701180 ctac-ggctcgaacaaaaaccccttaaaaaaccacccaaaaac 20701139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 55166896 - 55166955
Alignment:
Q  76 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 136  Q
    ||||||||||||||||||||||||||   |||||||||||||| ||| |||||||||||||    
T  55166896 aaggggaaatcggttgccgcacaaactttggctcgaacaaaaa-ccccttaaaaaccaccc 55166955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 10454412 - 10454357
Alignment:
Q  6 ggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtgg 61  Q
    ||||||| ||||||| ||||||||||||||  || |||||||||||||||||||||    
T  10454412 ggcaaaatattattaaccaacaagcccgtgcaaggagcactaataagctcgggtgg 10454357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 44656224 - 44656286
Alignment:
Q  1 taatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggag 63  Q
    |||| ||||||| ||||||| ||||||||||||||  ||| |||| |||||||||||||||||    
T  44656224 taattggcaaaatattattaaccaacaagcccgtgcaagatgcacaaataagctcgggtggag 44656286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 8431491 - 8431549
Alignment:
Q  76 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 136  Q
    |||||||||||||||||  || ||||||||||||||||||||| ||| |||||||||||||    
T  8431491 aaggggaaatcggttgcaaca-aaacaccggctcgaacaaaaa-ccccttaaaaaccaccc 8431549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 30836208 - 30836320
Alignment:
Q  72 aaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccacccacaaaccaaggtgccgcctataaacgtaacaccgt 171  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30836208 aaagaaggggaaatcgattgccgcacaaataccggctcgaacaaaaacccctttaaaaaccacccacaaacaaaggtgccgcctataaacgtaacaccgt 30836307  T
Q  172 aaacaccaggaaa 184  Q
    |||||||||||||    
T  30836308 aaacaccaggaaa 30836320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 5200481 - 5200609
Alignment:
Q  1 taatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnntaaagaaggggaaatcggttgccgcacaaa 100  Q
    |||||||||||| ||||||| |||||||| |||||  |||| |||||||||| | ||||||||        | | ||||| |||||||||||||||||||    
T  5200481 taatcggcaaaatattattaaccaacaagtccgtgcaagaaacactaataagtttgggtggagaaaaaaacatacaagggaaaatcggttgccgcacaaa 5200580  T
Q  101 caccggctcgaacaaaaatccctttaaaa 129  Q
    |||||||||||||||||| ||||| ||||    
T  5200581 caccggctcgaacaaaaaccccttaaaaa 5200609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 136
Target Start/End: Complemental strand, 22839386 - 22839250
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnnt-aaagaaggggaaatcggttgccgcacaaa 100  Q
    ||||||||||| ||||||| ||||||||||||||  ||| ||||||||||| |||| |||||         ||||||| ||||||||||||||  | |||    
T  22839386 aatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagttcggatggaggaaaaaaacaaagaagaggaaatcggttgccatataaa 22839287  T
Q  101 -caccggctcgaacaaaaatccctttaaaaaccaccc 136  Q
     || |||||||||||||||||||||||||||||||||    
T  22839286 acatcggctcgaacaaaaatccctttaaaaaccaccc 22839250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 130
Target Start/End: Original strand, 38086414 - 38086544
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnnta--aagaaggggaaatcggttgccgcacaa 99  Q
    |||| |||||| ||||||| |||| |||||||||  ||| ||||||||||||||||||||||       ||  |||||||| ||||||||||||  ||||    
T  38086414 aatcagcaaaatattattaaccaataagcccgtgcaagacgcactaataagctcgggtggagaaaaaaatacaaagaagggaaaatcggttgccatacaa 38086513  T
Q  100 acaccggctcgaacaaaaatccctttaaaaa 130  Q
    || | |||||||||||||| |||||||||||    
T  38086514 actctggctcgaacaaaaacccctttaaaaa 38086544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 136
Target Start/End: Original strand, 40930834 - 40930961
Alignment:
Q  6 ggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnntaaagaaggggaaatcggttgccgcacaaacaccg 105  Q
    ||||||| ||||||| ||||||||||||||  |||||||||||||||||||||||||         ||| ||||||||||||||||   |||||||| ||    
T  40930834 ggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaatacaaacaaggggaaatcggttg--tcacaaacaacg 40930931  T
Q  106 gctcgaacaaaaatccctttaaaaaccaccc 136  Q
    ||||||||||||| | | |||||||||||||    
T  40930932 gctcgaacaaaaa-ctccttaaaaaccaccc 40930961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 24200621 - 24200737
Alignment:
Q  1 taatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnntaaagaaggggaaatcggttgccgcacaaa 100  Q
    |||||||||||| |||||||  ||||||| |||||  ||||||||||||||||| |||||||         | | ||||||||||||||||||||| |||    
T  24200621 taatcggcaaaatattattaatcaacaagtccgtgcaagaagcactaataagcttgggtggaaaaaaaac-atacaaggggaaatcggttgccgcaaaaa 24200719  T
Q  101 caccggctcgaacaaaaa 118  Q
    ||||||||||||||||||    
T  24200720 caccggctcgaacaaaaa 24200737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 13959222 - 13959279
Alignment:
Q  5 cggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtgga 62  Q
    |||||||| ||||||||||||||||||||||  ||||||| |||||||||||||||||    
T  13959222 cggcaaaatattattagccaacaagcccgtgcaagaagcaataataagctcgggtgga 13959279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 25829276 - 25829410
Alignment:
Q  14 attattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnnt--aaagaaggggaaatcggttgccgcacaaacaccggctcga 111  Q
    ||||||| ||||||||||||||  |||||||||||||||||||||||||        |  ||| ||||||||||||||| ||  | ||||||||||| ||    
T  25829276 attattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaaaatacaaacaaggggaaatcggtttccctataaacaccggcttga 25829375  T
Q  112 acaaaaatccctttaaaaaccacccacaaaccaagg 147  Q
    | ||||| ||| |||||||||||||| |||| ||||    
T  25829376 ataaaaa-ccccttaaaaaccacccataaacaaagg 25829410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 10124920 - 10124859
Alignment:
Q  76 aaggggaaatcggttgccgcacaaa-caccggctcgaacaaaaatccctttaaaaaccaccc 136  Q
    ||||||||||||||||||  ||||| |||||||||||||||||| ||||| |||||||||||    
T  10124920 aaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaaaccaccc 10124859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 584138 - 584187
Alignment:
Q  5 cggcaaaagattattagccaacaagcccgtgtgagaagcactaataagct 54  Q
    |||||||| |||||||||||||||||||||   |||||||||||||||||    
T  584138 cggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 584187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14160692 - 14160641
Alignment:
Q  1 taatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagc 53  Q
    |||||||||||| |||||||||| || |||||||| |||||||||||| ||||    
T  14160692 taatcggcaaaatattattagcc-actagcccgtgcgagaagcactaacaagc 14160641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 30836128 - 30836193
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcac----taataagctcgggtggag 63  Q
    ||||||||||| ||||||| ||||||||| |||| |||||||||    |||||||||||| |||||    
T  30836128 aatcggcaaaatattattaaccaacaagctcgtgcgagaagcactaattaataagctcggatggag 30836193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 43268675 - 43268778
Alignment:
Q  72 aaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccacccacaaaccaaggtgccgcctataaacgtaacaccgt 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||| ||    
T  43268675 aaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaacccctttaaaaaccacccacaaacaaaggtgccgtctataaacgtaacactgt 43268774  T
Q  172 aaac 175  Q
    ||||    
T  43268775 aaac 43268778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 147
Target Start/End: Complemental strand, 19472932 - 19472786
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnnt-aaagaaggggaaatcggttgccgcacaaa 100  Q
    ||||||||||| ||||||| ||||||||||||||  ||| ||||||||||||||||||||||         ||||||||||||||| ||||||  |||||    
T  19472932 aatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggagaaaaaatacaaagaaggggaaatcagttgccatacaaa 19472833  T
Q  101 caccggctcgaacaaaaatccctttaaaaaccacccacaaaccaagg 147  Q
    | ||||||||||||||||||||||||||||||||||| |||| ||||    
T  19472832 ctccggctcgaacaaaaatccctttaaaaaccacccataaactaagg 19472786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 136
Target Start/End: Complemental strand, 12173086 - 12172954
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnntaaagaaggggaaatcggttgccgcacaaac 101  Q
    ||||||||||| ||||||| ||||||||||||||  ||||||||||||||||| |||||||         ||| |||||||||||||||||| |||||||    
T  12173086 aatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagcttgggtgga-aaaaaaacaaacaaggggaaatcggttgccacacaaac 12172988  T
Q  102 accggctcgaacaaaaatccctttaaaaaccaccc 136  Q
    | | ||||||||||||| ||| |||||||||||||    
T  12172987 atcagctcgaacaaaaa-ccccttaaaaaccaccc 12172954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 226
Target Start/End: Complemental strand, 43460761 - 43460602
Alignment:
Q  73 aagaaggggaaatcggttgccgcacaaa-caccggctcgaacaaaaatccctttaaaaaccacccacaaaccaaggtgccgcct-ataaacgta--acac 168  Q
    ||||||||||||||||||||   ||||| ||| | |||||||||||| ||||| ||||||||||  ||||| |||||||||||| | |||||||  ||||    
T  43460761 aagaaggggaaatcggttgcgatacaaaacactgactcgaacaaaaaccccttcaaaaaccaccttcaaacaaaggtgccgcctaaaaaacgtaacacac 43460662  T
Q  169 cgtaaacaccaggaaagcacccaaaa-caaaaaaggca-caagcaatgaggctgaagtat 226  Q
       ||||||||||||||||||||||| ||||  || || |||||||||||||||||||||    
T  43460661 aaaaaacaccaggaaagcacccaaaaccaaacgagacaccaagcaatgaggctgaagtat 43460602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 136
Target Start/End: Complemental strand, 26990733 - 26990601
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnntaaagaaggggaaatcggttgccgcacaaac 101  Q
    ||||||||||| ||||||| |||| |||||||||  ||||||||||||||||| |||||||         | | ||||| |||||| ||||||||||| |    
T  26990733 aatcggcaaaatattattaaccaataagcccgtgcaagaagcactaataagcttgggtggaaaaaaaac-atacaagggaaaatcgattgccgcacaagc 26990635  T
Q  102 accggctcgaacaaaaatccctttaaaaaccaccc 136  Q
    |||||||| |||||||||||| |||||||||||||    
T  26990634 accggctcaaacaaaaatccc-ttaaaaaccaccc 26990601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 41955963 - 41956024
Alignment:
Q  76 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccca 137  Q
    ||||||||||||||||||  |  |||||||||||||||||||||||||| ||||||||||||    
T  41955963 aaggggaaatcggttgccataataacaccggctcgaacaaaaatcccttaaaaaaccaccca 41956024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 47028990 - 47028937
Alignment:
Q  76 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaa 129  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||    
T  47028990 aaggggaaatcggttgccgcaaaaacaccggctcgaacaaaaaccccttaaaaa 47028937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 8462976 - 8463113
Alignment:
Q  9 aaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnntaa-agaaggggaaatcggttgccgcacaaacaccggc 107  Q
    |||| ||||||| ||||||||| ||||  |||||||||||| |||||||||||||         | | ||||| |||||||||||| || ||||  ||||    
T  8462976 aaaatattattaaccaacaagctcgtgcaagaagcactaattagctcgggtggagaaaaaatacatacaagggaaaatcggttgccacaaaaacgtcggc 8463075  T
Q  108 tcgaacaaaaatccctttaaaaaccacccacaaaccaa 145  Q
    ||||||||||| ||||| |||||||||||| |||||||    
T  8463076 tcgaacaaaaaccccttaaaaaaccacccaaaaaccaa 8463113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 38548809 - 38548750
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtgg 61  Q
    ||||||||||| ||||||| ||||||| ||||||  ||| ||||||||||||||||||||    
T  38548809 aatcggcaaaatattattaaccaacaaacccgtgcaagacgcactaataagctcgggtgg 38548750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 28447851 - 28447802
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataa 51  Q
    ||||||||||| ||||||| ||||||||||||||  ||||||||||||||    
T  28447851 aatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataa 28447802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 46757365 - 46757306
Alignment:
Q  76 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 136  Q
    |||||||||||| ||||| ||  |||||| ||||||||||||| |||||||||||||||||    
T  46757365 aaggggaaatcgattgccacaataacaccagctcgaacaaaaa-ccctttaaaaaccaccc 46757306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 42442007 - 42442065
Alignment:
Q  1 taatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtg 60  Q
    |||||||||||  ||||||| |||||||| |||||  |||||||||||||||||||||||    
T  42442007 taatcggcaaat-attattaaccaacaagtccgtgcaagaagcactaataagctcgggtg 42442065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 31833953 - 31833895
Alignment:
Q  76 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 136  Q
    ||||| |||||||||||| || || |||||||||||||||||| ||| |||||||||||||    
T  31833953 aagggaaaatcggttgccacataa-caccggctcgaacaaaaa-ccccttaaaaaccaccc 31833895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 43460837 - 43460785
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagct 54  Q
    ||||| ||||| ||||||| |||||||| | ||| ||||||||||||||||||    
T  43460837 aatcgacaaaatattattaaccaacaagtctgtgcgagaagcactaataagct 43460785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 16662307 - 16662535
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnntaaagaaggggaaatcggttgccgcacaaa- 100  Q
    |||| |||||| ||||||| |||||||||||||| ||||||||||||||||||  ||||||          |||||||| ||||| ||||||  |||||     
T  16662307 aatcagcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctaaggtggaaaaaaact--aagaagggaaaatctgttgccatacaaaa 16662404  T
Q  101 caccggctcgaacaaaaatccctttaaaaaccacccacaaaccaaggtgccgcctataaa-cgtaa--caccgtaaacaccaggaaagcacccaaaacaa 197  Q
    ||| |||||| ||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||  |||   |||||||| |||| |||||||||| |    
T  16662405 cactggctcgtacaaaaacccctttaaaaaccaccctcaaacaaaggtgccgcctataaaacgtaaagcacaaaaaacaccatgaaaacacccaaaacca 16662504  T
Q  198 aaa-aggcac-aagcaatgaggctgaagtat 226  Q
    ||  |||||| ||||||||||||||||||||    
T  16662505 aacgaggcaccaagcaatgaggctgaagtat 16662535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 16572198 - 16572074
Alignment:
Q  6 ggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnntaa-agaaggggaaatcggttgccgcacaaacacc 104  Q
    ||||||| ||||||| |||||||||||||| |||| |||||||||||||||||||||         || | ||||||||||||||||||||| |||||||    
T  16572198 ggcaaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtggaaaaaaaataaatacaaggggaaatcggttgccgcaaaaacacc 16572099  T
Q  105 ggctcgaacaaaaatccctttaaaaa 130  Q
    || |||||| |||| |||||||||||    
T  16572098 ggttcgaac-aaaacccctttaaaaa 16572074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 130
Target Start/End: Complemental strand, 32183413 - 32183282
Alignment:
Q  2 aatcggcaaaagattattagccaa-caagcccgtgtgagaagcactaataagctcgggtggagnnnnnnnta--aagaaggggaaatcggttgccgcaca 98  Q
    ||||||||||| ||||||| |||| ||||||||||  ||  |||||||||||||||||||||         |  |||||||||||||||||||||  |||    
T  32183413 aatcggcaaaatattattaaccaaacaagcccgtgcaaggcgcactaataagctcgggtggaagaaaaaaaacaaagaaggggaaatcggttgccataca 32183314  T
Q  99 aacaccggctcgaacaaaaatccctttaaaaa 130  Q
    |||||||||||||||||||| |||||||||||    
T  32183313 aacaccggctcgaacaaaaacccctttaaaaa 32183282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 142
Target Start/End: Original strand, 25641269 - 25641413
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggag---nnnnnnntaaagaaggggaaatcggttgccgcaca 98  Q
    |||||||||||  |||||| ||||||||||||||  ||||||||||| ||||| ||||||||           |||||||||||||| |||||||  ||     
T  25641269 aatcggcaaaatgttattaaccaacaagcccgtgcaagaagcactaaaaagcttgggtggagaaaaaaaatacaaagaaggggaaattggttgccatact 25641368  T
Q  99 aacaccggctcgaacaaaaatcccttt-aaaaaccacccacaaac 142  Q
    |||| ||||||||||||||| || ||| |||||||||||| ||||    
T  25641369 aacatcggctcgaacaaaaacccttttaaaaaaccacccataaac 25641413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 15186981 - 15187041
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtgga 62  Q
    ||||||||||| ||||||| ||||||||||||||  ||| ||||||||||||| |||||||    
T  15186981 aatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtgga 15187041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 47571571 - 47571629
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtg 60  Q
    ||||||||||| ||||||| ||||||| ||||||  || ||||||||||||||||||||    
T  47571571 aatcggcaaaatattattaaccaacaaacccgtggaaggagcactaataagctcgggtg 47571629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 42390855 - 42390906
Alignment:
Q  83 aatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccacc 135  Q
    |||||||||||||  |||||||||||| |||||||| ||| ||||||||||||    
T  42390855 aatcggttgccgctaaaacaccggctcaaacaaaaa-ccccttaaaaaccacc 42390906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 46691845 - 46691981
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggag---nnnnnnntaaagaaggggaaatcggttgccgcaca 98  Q
    ||||||||||| ||||||| ||||||||||||||  ||||||||||| ||||||||||||||           | | |||||||||||||||||| || |    
T  46691845 aatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaacaagctcgggtggagaaaaaaaatacatacaaggggaaatcggttgccacata 46691944  T
Q  99 aacaccggctcgaacaaaaatccctttaaaaaccaccc 136  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  46691945 aacaccggctcgaacaaaaa-ccccttaaaaaccaccc 46691981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 49035865 - 49036001
Alignment:
Q  14 attattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnnt---aaagaaggggaaatcggttgccgcacaaacaccggctcg 110  Q
    ||||||| |||||||| ||||   ||||||||||||||||||||||||||       |   ||| |||||||||||||||||| || ||||||||| |||    
T  49035865 attattaaccaacaagtccgtacaagaagcactaataagctcgggtggagaaaaaaattacaaacaaggggaaatcggttgccacataaacaccggttcg 49035964  T
Q  111 aacaaaaatccctttaaaaaccacccacaaaccaagg 147  Q
    |||||||| ||||| |||||||||||| |||| ||||    
T  49035965 aacaaaaaccccttaaaaaaccacccataaacaaagg 49036001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 36615808 - 36615934
Alignment:
Q  7 gcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnntaaagaaggggaaatcggttgccgcacaaacaccgg 106  Q
    |||||| ||||||| ||||||||||||||  |||||||||||||||||||||||||         ||| |||||||||||||||||  ||||||| || |    
T  36615808 gcaaaatattattacccaacaagcccgtgcaagaagcactaataagctcgggtgga-aaaaaacaaaacaaggggaaatcggttgc--cacaaactccag 36615904  T
Q  107 ctcgaacaaaaatccctttaaaaaccaccc 136  Q
    |||||||||||| || || |||||||||||    
T  36615905 ctcgaacaaaaaccctttaaaaaaccaccc 36615934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 33320833 - 33320704
Alignment:
Q  1 taatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnntaaagaaggggaaatcggttgccgcacaaa 100  Q
    |||||||||||  ||| ||| ||||||||||||||  ||||||||||||||||||||||||          ||| |||||||||| |||||||  |||||    
T  33320833 taatcggcaaat-attgttaaccaacaagcccgtgcaagaagcactaataagctcgggtgg----gaaaaaaaacaaggggaaattggttgccttacaaa 33320739  T
Q  101 caccggctcgaacaaaaatccctttaaaaaccacc 135  Q
    |||||||||||||||||  ||||| ||||||||||    
T  33320738 caccggctcgaacaaaacccccttaaaaaaccacc 33320704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 41702923 - 41702870
Alignment:
Q  76 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaa 129  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||| ||||    
T  41702923 aaggggaagtcggttgccgcacaaacaccggctcgaacaaaaaccccttaaaaa 41702870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 31424775 - 31424902
Alignment:
Q  5 cggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnnt-aaagaaggggaaatcggttgccgcac-aaaca 102  Q
    |||||||| ||||||| ||||||| ||||||  |||| |||||||||||| ||||||||         ||||||||||||||||||||||   | |||||    
T  31424775 cggcaaaatattattaaccaacaaacccgtgcaagaaacactaataagcttgggtggagaaaaaaaacaaagaaggggaaatcggttgccattcgaaaca 31424874  T
Q  103 ccggctcgaacaaaaatccctttaaaaa 130  Q
    ||||||||| |||||| |||||||||||    
T  31424875 ccggctcgatcaaaaacccctttaaaaa 31424902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 1039066 - 1039123
Alignment:
Q  5 cggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtgga 62  Q
    |||||||| ||||||| || |||||||||||  |||||||||||||||||||||||||    
T  1039066 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaataagctcgggtgga 1039123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 30655601 - 30655658
Alignment:
Q  5 cggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtgga 62  Q
    |||||||| ||||||| ||||||||||||||  ||| |||||||||||||||||||||    
T  30655601 cggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtgga 30655658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 42598115 - 42598057
Alignment:
Q  5 cggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggag 63  Q
    |||||||| ||||||| ||||||| ||||||  ||||||||||||||||| ||||||||    
T  42598115 cggcaaaatattattaaccaacaaacccgtgcaagaagcactaataagcttgggtggag 42598057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 22197727 - 22197668
Alignment:
Q  76 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 136  Q
    |||||||||||| || || || |||||||| |||||||||||| ||||| |||||||||||    
T  22197727 aaggggaaatcgattaccaca-aaacaccgtctcgaacaaaaaccccttaaaaaaccaccc 22197668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 22240094 - 22240153
Alignment:
Q  76 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 136  Q
    |||||||||||| || || || |||||||| |||||||||||| ||||| |||||||||||    
T  22240094 aaggggaaatcgattaccaca-aaacaccgtctcgaacaaaaaccccttaaaaaaccaccc 22240153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 29706077 - 29706026
Alignment:
Q  1 taatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagc 53  Q
    |||||||||||| |||||||||| || |||||||| |||||||||||| ||||    
T  29706077 taatcggcaaaatattattagcc-actagcccgtgcgagaagcactaacaagc 29706026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 41378216 - 41378332
Alignment:
Q  15 ttattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnntaaagaaggggaaatcggttgccgcacaaacaccggctcgaaca 114  Q
    |||||| ||||||||||||||  ||| |||||||||||||||||||||        || | |||||||||||||||||| ||||||| |||||||||| |    
T  41378216 ttattaaccaacaagcccgtgaaagatgcactaataagctcgggtgga----aaaataca-aaggggaaatcggttgccacacaaactccggctcgaata 41378310  T
Q  115 aaaatccctttaaaaaccaccc 136  Q
    |||| |||||||||||||||||    
T  41378311 aaaacccctttaaaaaccaccc 41378332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 137
Target Start/End: Original strand, 14732344 - 14732474
Alignment:
Q  6 ggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnntaa-agaaggggaaatcggttgccgcacaaacacc 104  Q
    ||||||| ||||||| |||||||||||||| |||  |||||||||||||||||||| |       ||| | ||||||||||||||| ||||| ||| |||    
T  14732344 ggcaaaatattattaaccaacaagcccgtgcgaggtgcactaataagctcgggtgg-gaaaaaaataatacaaggggaaatcggttaccgcaaaaatacc 14732442  T
Q  105 ggctcgaacaaaaatccctttaaaaaccaccca 137  Q
     ||||||||||||| ||| ||||||||||||||    
T  14732443 agctcgaacaaaaa-ccccttaaaaaccaccca 14732474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 41419753 - 41419616
Alignment:
Q  1 taatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnntaa--agaaggggaaatcggttgccgcaca 98  Q
    |||| ||||||| ||||||| ||||||||||||||  ||| |||||||||||||||||||||         ||  | ||||||||||||||||||  |      
T  41419753 taattggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagctcgggtggaaaaaaaaacaaatacaaggggaaatcggttgccataat 41419654  T
Q  99 aacaccggctcgaacaaaaatccctttaaaaaccaccca 137  Q
    ||||||| |||||||||||| ||| ||||||||||||||    
T  41419653 aacaccgactcgaacaaaaa-ccccttaaaaaccaccca 41419616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 15859158 - 15859100
Alignment:
Q  72 aaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaa 130  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||    
T  15859158 aaagaaggggaaatcggttgccaaacaaacaccggctcgaacaaaaacccctttaaaaa 15859100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 33984887 - 33984747
Alignment:
Q  9 aaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnntaaa-------gaaggggaaatcggttgccgcacaaac 101  Q
    |||| ||||||||||||||||||||| |||| |||||||||||||||||||||||        |||        ||||||||||||||||||  ||||||    
T  33984887 aaaatattattagccaacaagcccgtatgaggagcactaataagctcgggtggagagagaaaaaaaatacatccaaggggaaatcggttgccatacaaac 33984788  T
Q  102 accggctcgaacaaaaatccctttaaaaaccacccacaaac 142  Q
    || || ||||||||||| ||||| |||||||||||| ||||    
T  33984787 actggttcgaacaaaaaccccttcaaaaaccacccataaac 33984747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 10247044 - 10246910
Alignment:
Q  1 taatcggcaaaag-attattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnntaaagaaggggaaatcggttgccgcacaa 99  Q
    ||||||||||||  ||||||| ||||||||||||||  ||||||||||| | | || |||||||        ||||||||| |||||||||| | |||||    
T  10247044 taatcggcaaaaatattattaaccaacaagcccgtgcaagaagcactaaaaggttcaggtggagaaaaaac-aaagaagggaaaatcggttgtcacacaa 10246946  T
Q  100 acaccggctcgaacaaaaatccctttaaaaaccaccc 136  Q
     |||||||||||||||||| |||||||||||||||||    
T  10246945 -caccggctcgaacaaaaacccctttaaaaaccaccc 10246910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 6575857 - 6575797
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtgga 62  Q
    ||||||||||| |||||||  |||||||||||||  ||||||||||||||| |||||||||    
T  6575857 aatcggcaaaatattattaatcaacaagcccgtgcaagaagcactaataagttcgggtgga 6575797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 11546896 - 11546765
Alignment:
Q  5 cggcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnntaaagaaggggaaatcggttgccgcacaaacacc 104  Q
    |||||||| ||||||| |  |||||||||||  || ||||||||||||||||||||           |||||||| ||||||||||| |  |||||||||    
T  11546896 cggcaaaatattattaactgacaagcccgtgcaagtagcactaataagctcgggtgagaaaaaaaacaaagaaggagaaatcggttgtcatacaaacacc 11546797  T
Q  105 ggctcgaacaaaaatccctttaaaaaccaccc 136  Q
    ||||||||||||||  |||| |||||| ||||    
T  11546796 ggctcgaacaaaaactccttaaaaaactaccc 11546765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 33112791 - 33112851
Alignment:
Q  76 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 136  Q
    ||||||||||||||||||  ||||||   |||||||||||||| ||||| |||||||||||    
T  33112791 aaggggaaatcggttgccatacaaactttggctcgaacaaaaaccccttaaaaaaccaccc 33112851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 14459979 - 14459932
Alignment:
Q  5 cggcaaaagattattagccaacaagcccgtgtgagaagcactaataag 52  Q
    |||||||| ||||||||||||| |||||||| ||| ||||||||||||    
T  14459979 cggcaaaatattattagccaacgagcccgtgcgaggagcactaataag 14459932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21423841 - 21423790
Alignment:
Q  1 taatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagc 53  Q
    |||||||||||| |||||||||| || |||||||| |||||||||||| ||||    
T  21423841 taatcggcaaaatattattagcc-actagcccgtgcgagaagcactaacaagc 21423790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 33112715 - 33112767
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataagct 54  Q
    ||||||||||| ||||||| ||||||||||||||  ||| ||||||| |||||    
T  33112715 aatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaaaaagct 33112767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 34761224 - 34761160
Alignment:
Q  72 aaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 136  Q
    |||||||  ||||||||||| |  |||||||||| ||||||||||||  |||| |||||||||||    
T  34761224 aaagaagaagaaatcggttgtcatacaaacaccgactcgaacaaaaactccttaaaaaaccaccc 34761160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 819134 - 819261
Alignment:
Q  7 gcaaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtggagnnnnnnntaaagaaggggaaatcggttgccgcacaaacaccgg 106  Q
    |||||| ||||||| |||| ||| |||||| ||||||||||||||| |||||||||         ||| || ||||||||||||||  ||||||||||      
T  819134 gcaaaatattattacccaataagtccgtgtaagaagcactaataagttcgggtggaaaaaaaataaaacaaagggaaatcggttgc--cacaaacaccaa 819231  T
Q  107 ctcgaacaaaaatccctttaaaaaccaccc 136  Q
    |||||||||||| ||||| |||||||||||    
T  819232 ctcgaacaaaaaccccttaaaaaaccaccc 819261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 2292223 - 2292161
Alignment:
Q  75 gaaggggaaatcggttgccgcacaaa-caccggctcgaacaaaaatccctttaaaaaccaccc 136  Q
    |||||||||||||||||||  ||||| |||||||||||||||||| ||||| |||||||||||    
T  2292223 gaaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaaaccaccc 2292161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 9931877 - 9931918
Alignment:
Q  77 aggggaaatcggttgccgcacaaacaccggctcgaacaaaaa 118  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  9931877 aggggaaatcggttgccgcacaaacaccagctcgaacaaaaa 9931918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 22887337 - 22887284
Alignment:
Q  8 caaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtgg 61  Q
    ||||| ||||||| |||||||||||||| |||| ||||||||||||||||||||    
T  22887337 caaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtgg 22887284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 23172985 - 23173118
Alignment:
Q  14 attattagccaacaagcccgtgtgagaagcactaataagctcgggtgg-agnnnnnnntaaagaaggggaaatcggttgccgcacaaacaccggctcgaa 112  Q
    ||||||| ||||||||||||||  |||||||||||||||||||||||| |         ||| |||| |||||| ||||||  | |||||||||||||||    
T  23172985 attattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaaatacaaacaaggagaaatcagttgccctataaacaccggctcgaa 23173084  T
Q  113 caaaaatccctttaaaaaccacccacaaaccaagg 147  Q
    | |||| ||| |||||||||||||| |||| ||||    
T  23173085 c-aaaacccccttaaaaaccacccataaacaaagg 23173118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 10431116 - 10431056
Alignment:
Q  76 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 136  Q
    |||| ||||||||||||| ||||||||||| |||||||||||| | | | |||||||||||    
T  10431116 aaggagaaatcggttgccacacaaacaccgactcgaacaaaaacctcataaaaaaccaccc 10431056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 9597754 - 9597804
Alignment:
Q  2 aatcggcaaaagattattagccaacaagcccgtgtgagaagcactaataag 52  Q
    ||||||||||| ||||||| |||||||||| |||  |||||||||||||||    
T  9597754 aatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataag 9597804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 3677809 - 3677849
Alignment:
Q  22 ccaacaagcccgtgtgagaagcactaataagctcgggtgga 62  Q
    ||||||||||| || |||| |||||||||||||||||||||    
T  3677809 ccaacaagcccatgcgagatgcactaataagctcgggtgga 3677849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 25539947 - 25539896
Alignment:
Q  8 caaaagattattagccaacaagcccgtgtgagaagcactaataagctcgggtg 60  Q
    ||||| ||||||| ||||||||||||||  ||||||| |||||||||||||||    
T  25539947 caaaatattatta-ccaacaagcccgtgcaagaagcattaataagctcgggtg 25539896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 12898 - 12947
Alignment:
Q  5 cggcaaaagattattagccaacaagcccgtgtgagaagcactaataagct 54  Q
    |||||||| |||||||||||||||||||||   |||||||||||||||||    
T  12898 cggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 12947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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