View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_92 (Length: 240)
Name: NF1720_low_92
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_92 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 162
Target Start/End: Complemental strand, 17919264 - 17919112
Alignment:
| Q |
11 |
caaaggagccagatttgatagctttgtcaaggtattgatctggaataatacattgggatgcaacagctatataaaagtacctataagagatataattagt |
110 |
Q |
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| T |
17919264 |
caaaagagccagatttgatagctttgtcaaggtattgatctggaataatacattgggatgcaacagctatataaaagtacctagaagagatataattagt |
17919165 |
T |
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| Q |
111 |
tagt-atgagatagttaaataatggaaatataagaaagtttatcattttatat |
162 |
Q |
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| T |
17919164 |
tagtaatgagagagttaaacaatgaaaatataagaaagttgatcattttatat |
17919112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 17907946 - 17907850
Alignment:
| Q |
17 |
agccagatttgatagctttgtcaaggtattgatctggaataatacattgggatgcaacagctatataaaagtacctataagagatataattagttag |
113 |
Q |
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| T |
17907946 |
agccagttttgatagctttgtcaaggtagtgatctggcataacacactggggtgcagaagacaagtaaaagtacctataagtgatttaattagttag |
17907850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 17846751 - 17846696
Alignment:
| Q |
17 |
agccagatttgatagctttgtcaaggtattgatctggaataatacattgggatgca |
72 |
Q |
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| T |
17846751 |
agccagttttgatagctttgtcaaggtagtgatctggcataaaacattggggtgca |
17846696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 17887017 - 17886932
Alignment:
| Q |
17 |
agccagatttgatagctttgtcaaggtattgatctggaataatacattgggatgcaacagctatataaaagtacctataagagata |
102 |
Q |
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| T |
17887017 |
agccagttttgatagctttgtcaaggtagtaatctggcataaaacattggggtgcagaagccaagtaaaagtacctgcaagagata |
17886932 |
T |
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