View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_94 (Length: 236)
Name: NF1720_low_94
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_94 |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 41537048 - 41537264
Alignment:
| Q |
6 |
agaagcaaaggtagaggcctagtgattaagggttgggctcctcagttattgatattgtcacatcttgcaattggaggattcttaacacattgtggttgga |
105 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41537048 |
agaatcaatggtagaggcctagtgattaagggttgggctcctcagttattgatattgtcgcatcttgcaattggaggattcttaacacattgtggttgga |
41537147 |
T |
|
| Q |
106 |
attctactcttgaagcaatatgtgctggtgtaccaatggttacatggccactttttgcggatcaatttttgaatgaaagttttgttgtgcaaatattaaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41537148 |
attctactcttgaagcaatatgtgctggtgtaccaatggttacatggccactttttgcggatcaatttttgaatgaaagttttgttgtgcaaatattaaa |
41537247 |
T |
|
| Q |
206 |
agttggtgtgaaaattg |
222 |
Q |
| |
|
||||||||||||||||| |
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| T |
41537248 |
agttggtgtgaaaattg |
41537264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 41518069 - 41518285
Alignment:
| Q |
6 |
agaagcaaaggtagaggcctagtgattaagggttgggctcctcagttattgatattgtcacatcttgcaattggaggattcttaacacattgtggttgga |
105 |
Q |
| |
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|||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41518069 |
agaatcaatggtagaggcctagtgattaaaggttgggctcctcagttattgatattgtcgcatcttgcaattggaggattcttaacacattgtggttgga |
41518168 |
T |
|
| Q |
106 |
attctactcttgaagcaatatgtgctggtgtaccaatggttacatggccactttttgcggatcaatttttgaatgaaagttttgttgtgcaaatattaaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||| ||||||||||||||||| |
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| T |
41518169 |
attctactcttgaagcaatatgtgctggtgtaccaatggttacatggccactttttgcagaccaatttttgaatgaatgtttagttgtgcaaatattaaa |
41518268 |
T |
|
| Q |
206 |
agttggtgtgaaaattg |
222 |
Q |
| |
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||||||||||||||||| |
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| T |
41518269 |
agttggtgtgaaaattg |
41518285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 204
Target Start/End: Original strand, 41564460 - 41564636
Alignment:
| Q |
28 |
tgattaagggttgggctcctcagttattgatattgtcacatcttgcaattggaggattcttaacacattgtggttggaattctactcttgaagcaatatg |
127 |
Q |
| |
|
|||| ||||||||||||||||| | |||||| | ||||| || || ||||||||||||||||||| ||||| |||||||| || | ||||||||||| |
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| T |
41564460 |
tgataaagggttgggctcctcaagttttgatactatcacacttttcagttggaggattcttaacacactgtggctggaattcgacgttagaagcaatatg |
41564559 |
T |
|
| Q |
128 |
tgctggtgtaccaatggttacatggccactttttgcggatcaatttttgaatgaaagttttgttgtgcaaatattaa |
204 |
Q |
| |
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||||||||| |||||| |||||||||| | || | ||||| ||||| ||||| || ||||||||| ||||||||| |
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|
| T |
41564560 |
tgctggtgtgccaatgattacatggccgttattcggagatcagttttttaatgagaggtttgttgtggaaatattaa |
41564636 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 48532787 - 48532895
Alignment:
| Q |
73 |
caattggaggattcttaacacattgtggttggaattctactcttgaagcaatatgtgctggtgtaccaatggttacatggccactttttgcggatcaatt |
172 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| || ||||||| ||| |||||||| | ||| |||| || ||||| | ||||| || ||||| |
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| T |
48532787 |
caattggaggattcttaacacattgtggatggaattcaacacttgaagggataagtgctggtttgccattggtaacttggccgttatttgctgaccaatt |
48532886 |
T |
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| Q |
173 |
tttgaatga |
181 |
Q |
| |
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||||||||| |
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| T |
48532887 |
tttgaatga |
48532895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 41511427 - 41511553
Alignment:
| Q |
55 |
tgatattgtcacatcttgcaattggaggattcttaacacattgtggttggaattctactcttgaagcaatatgtgctggtgtaccaatggttacatggcc |
154 |
Q |
| |
|
||||||| |||||| | ||||||| ||||| || || ||||||||||||||||| || ||||||| ||| || ||||||||||||||| || ||||| |
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| T |
41511427 |
tgatattatcacattcttcaattggtggatttttgactcattgtggttggaattcaacacttgaagggataagttttggtgtaccaatggtaacttggcc |
41511526 |
T |
|
| Q |
155 |
actttttgcggatcaatttttgaatga |
181 |
Q |
| |
|
| | ||||| || |||||||||||||| |
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| T |
41511527 |
attatttgctgaccaatttttgaatga |
41511553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 8136624 - 8136419
Alignment:
| Q |
17 |
tagaggcctagtgattaagggttgggctcctcagttattgatattgtcacatcttgcaattggaggattcttaacacattgtggttggaattctactctt |
116 |
Q |
| |
|
||||||| |||| |||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8136624 |
tagaggcttagtaattaagggttgggcccctcagttattgattttgtcacatcctgcaattggaggattcttaacacattgtggttggaattctacaatg |
8136525 |
T |
|
| Q |
117 |
gaagcaatatgtgctggtgtaccaatggttacatggccactttttgcggatcaatttttgaatgaaagttttgttgtgcaaatattaaaagttggtgtga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| |||||||||||||| ||||||||||| | |
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| T |
8136524 |
gaagcaatatgtgctggtgtaccaatggttacatggccactttttggagatcaattttttaatgaatgtttagttgtgcaaatattgaaagttggtgtaa |
8136425 |
T |
|
| Q |
217 |
aaattg |
222 |
Q |
| |
|
|||||| |
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| T |
8136424 |
aaattg |
8136419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 35774660 - 35774614
Alignment:
| Q |
73 |
caattggaggattcttaacacattgtggttggaattctactcttgaa |
119 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||| |||||| |
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|
| T |
35774660 |
caattgggggattcttaactcattgtggttggaattctacacttgaa |
35774614 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 20156935 - 20156831
Alignment:
| Q |
36 |
ggttgggctcctcagttattgatattgtcacatcttgcaattggaggattcttaacacattgtggttggaattctactcttgaagcaatatgtgctggtg |
135 |
Q |
| |
|
||||||||||| || | ||||||||||||||| ||||| || | ||| || ||||||||||| |||||||| || | ||||| ||||||||||||| |
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|
| T |
20156935 |
ggttgggctccacaagttttgatattgtcacataaagcaataggtgcatttttgacacattgtggatggaattcaacattagaagctatatgtgctggtg |
20156836 |
T |
|
| Q |
136 |
tacca |
140 |
Q |
| |
|
||||| |
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|
| T |
20156835 |
tacca |
20156831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 183
Target Start/End: Original strand, 20155251 - 20155361
Alignment:
| Q |
73 |
caattggaggattcttaacacattgtggttggaattctactcttgaagcaatatgtgctggtgtaccaatggttacatggccactttttgcggatcaatt |
172 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| || |||||| |||| ||| || |||||| |||||||||| | ||||| || ||||| |
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|
| T |
20155251 |
caattggaggattcttgacacattgtggatggaattcaacaattgaaggtgtatgctttggggtgccaatgattacatggcctttatttgctgaacaatt |
20155350 |
T |
|
| Q |
173 |
tttgaatgaaa |
183 |
Q |
| |
|
||| ||||||| |
|
|
| T |
20155351 |
tttaaatgaaa |
20155361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 297 - 347
Alignment:
| Q |
76 |
ttggaggattcttaacacattgtggttggaattctactcttgaagcaatat |
126 |
Q |
| |
|
||||||| ||| |||| |||||||||||||||||||| |||||||| |||| |
|
|
| T |
297 |
ttggagggttcctaactcattgtggttggaattctacacttgaagctatat |
347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 297 - 347
Alignment:
| Q |
76 |
ttggaggattcttaacacattgtggttggaattctactcttgaagcaatat |
126 |
Q |
| |
|
||||||| ||| |||| |||||||||||||||||||| |||||||| |||| |
|
|
| T |
297 |
ttggagggttcctaactcattgtggttggaattctacacttgaagctatat |
347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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