View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_97 (Length: 235)
Name: NF1720_low_97
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_97 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 12696911 - 12697125
Alignment:
| Q |
15 |
tgagactatgcttaatttatacaaactagagataataacaactaaagcgatacaatacaaatttaaaatctatatnnnnnnnnnnnnn-tgaatttgtga |
113 |
Q |
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| T |
12696911 |
tgagactatgcttaatttatacaaactaaagataataacaactaaagagatacaatacaaattcaaaatctataaaaaaaaaaaaaaaatgaatttgtga |
12697010 |
T |
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| Q |
114 |
a-taaactcgcatcattcaggttaatagtacaacataaaatgacaaaatataagcctataaatatgactaaatgtccaaaatagcaatgcattcgtattt |
212 |
Q |
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| T |
12697011 |
aataaactcgcatcattcaggttaacagtacaatataaaatgacaaaatataagtctataaatatgactaaatgtccaaaatagcaatgcatccgtattt |
12697110 |
T |
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| Q |
213 |
gtaatattgatgatg |
227 |
Q |
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||||||||||||||| |
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| T |
12697111 |
gtaatattgatgatg |
12697125 |
T |
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