View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1721-Insertion-2 (Length: 325)

Name: NF1721-Insertion-2
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1721-Insertion-2
NF1721-Insertion-2
[»] chr5 (42 HSPs)
chr5 (9-319)||(35187918-35188224)
chr5 (24-271)||(7209858-7210125)
chr5 (173-271)||(36760767-36760865)
chr5 (192-271)||(28559305-28559384)
chr5 (162-247)||(5746265-5746350)
chr5 (179-271)||(20927915-20928007)
chr5 (150-241)||(35812062-35812153)
chr5 (150-267)||(1996216-1996333)
chr5 (153-249)||(7210214-7210310)
chr5 (192-271)||(16327168-16327247)
chr5 (192-271)||(28559424-28559503)
chr5 (72-143)||(36759817-36759888)
chr5 (192-271)||(38682793-38682872)
chr5 (174-247)||(4943069-4943143)
chr5 (209-271)||(4943166-4943228)
chr5 (173-271)||(25456345-25456443)
chr5 (209-271)||(35461446-35461508)
chr5 (209-271)||(35461701-35461763)
chr5 (209-266)||(35812181-35812238)
chr5 (192-248)||(4942991-4943047)
chr5 (192-271)||(1996341-1996420)
chr5 (192-271)||(16327287-16327366)
chr5 (192-271)||(36759673-36759752)
chr5 (174-248)||(10827275-10827349)
chr5 (173-271)||(35461506-35461604)
chr5 (9-67)||(36760610-36760668)
chr5 (150-208)||(38682727-38682785)
chr5 (152-241)||(35813388-35813477)
chr5 (174-247)||(37642888-37642961)
chr5 (204-248)||(37642994-37643038)
chr5 (192-247)||(23661971-23662026)
chr5 (192-247)||(23796544-23796599)
chr5 (209-271)||(19550109-19550171)
chr5 (209-271)||(23662144-23662206)
chr5 (205-271)||(25456476-25456542)
chr5 (193-247)||(38680719-38680773)
chr5 (210-247)||(35813172-35813209)
chr5 (193-241)||(20181441-20181489)
chr5 (223-271)||(23796382-23796430)
chr5 (192-268)||(33491585-33491661)
chr5 (199-247)||(35811999-35812047)
chr5 (183-247)||(35813478-35813542)
[»] chr4 (38 HSPs)
chr4 (29-160)||(40119657-40119788)
chr4 (150-271)||(17231998-17232119)
chr4 (153-247)||(12592273-12592367)
chr4 (193-271)||(40395169-40395247)
chr4 (153-247)||(51950564-51950658)
chr4 (154-271)||(2470058-2470175)
chr4 (192-271)||(45038364-45038443)
chr4 (192-268)||(12498693-12498769)
chr4 (192-247)||(24684142-24684197)
chr4 (194-247)||(2787979-2788032)
chr4 (180-248)||(12498796-12498864)
chr4 (192-271)||(2469969-2470046)
chr4 (172-271)||(11884686-11884785)
chr4 (192-271)||(26782481-26782560)
chr4 (204-271)||(41083124-41083191)
chr4 (209-271)||(2469909-2469971)
chr4 (209-271)||(25055891-25055953)
chr4 (153-247)||(55617501-55617594)
chr4 (153-247)||(55624805-55624898)
chr4 (210-271)||(2788160-2788221)
chr4 (192-265)||(26782369-26782441)
chr4 (192-269)||(51950669-51950746)
chr4 (153-241)||(40147051-40147139)
chr4 (192-247)||(9999383-9999438)
chr4 (192-271)||(9999478-9999557)
chr4 (192-271)||(24369252-24369331)
chr4 (180-271)||(40395275-40395366)
chr4 (192-247)||(41083242-41083297)
chr4 (192-247)||(45787117-45787172)
chr4 (153-268)||(45787183-45787298)
chr4 (192-271)||(53863506-53863585)
chr4 (209-271)||(7246289-7246351)
chr4 (209-271)||(41083319-41083381)
chr4 (209-266)||(46196125-46196182)
chr4 (192-265)||(53863393-53863466)
chr4 (205-242)||(55617440-55617477)
chr4 (205-242)||(55624744-55624781)
chr4 (199-239)||(41519347-41519387)
[»] chr2 (35 HSPs)
chr2 (12-271)||(4188833-4189080)
chr2 (70-182)||(6694324-6694436)
chr2 (9-271)||(11791584-11791866)
chr2 (154-268)||(12612459-12612571)
chr2 (150-271)||(3876884-3877005)
chr2 (192-271)||(36694502-36694581)
chr2 (8-138)||(14166119-14166248)
chr2 (150-247)||(5009257-5009354)
chr2 (153-265)||(6694104-6694217)
chr2 (152-248)||(25895064-25895160)
chr2 (154-266)||(11791392-11791496)
chr2 (150-247)||(31630222-31630318)
chr2 (143-246)||(4188657-4188760)
chr2 (192-271)||(5009362-5009440)
chr2 (192-271)||(31630135-31630214)
chr2 (205-271)||(43699440-43699506)
chr2 (192-241)||(4511488-4511537)
chr2 (162-247)||(14166347-14166432)
chr2 (174-271)||(44556595-44556692)
chr2 (199-271)||(29379888-29379960)
chr2 (192-248)||(33847622-33847678)
chr2 (204-271)||(1316105-1316172)
chr2 (192-271)||(9500975-9501054)
chr2 (193-247)||(4511942-4511996)
chr2 (209-251)||(39442264-39442306)
chr2 (208-271)||(5009168-5009232)
chr2 (199-271)||(25894975-25895047)
chr2 (209-271)||(1316045-1316107)
chr2 (150-188)||(4511545-4511583)
chr2 (210-271)||(25895182-25895243)
chr2 (215-248)||(36217155-36217188)
chr2 (194-230)||(3876838-3876874)
chr2 (192-244)||(4511868-4511920)
chr2 (223-271)||(14166466-14166514)
chr2 (192-247)||(36694406-36694462)
[»] chr1 (15 HSPs)
chr1 (9-160)||(41007258-41007409)
chr1 (150-241)||(52913297-52913388)
chr1 (192-247)||(2633239-2633294)
chr1 (154-271)||(2633306-2633423)
chr1 (163-248)||(41007432-41007517)
chr1 (150-241)||(1173167-1173258)
chr1 (183-271)||(18608648-18608736)
chr1 (193-241)||(18981090-18981138)
chr1 (192-247)||(1173105-1173159)
chr1 (155-218)||(38699114-38699177)
chr1 (192-271)||(40892488-40892566)
chr1 (209-247)||(7489993-7490031)
chr1 (226-271)||(7490029-7490074)
chr1 (209-257)||(52913163-52913211)
chr1 (192-248)||(52913233-52913289)
[»] chr6 (21 HSPs)
chr6 (32-132)||(5197506-5197606)
chr6 (150-247)||(24059759-24059856)
chr6 (192-267)||(21598634-21598709)
chr6 (150-247)||(364079-364176)
chr6 (192-271)||(17342629-17342708)
chr6 (192-248)||(17136937-17136993)
chr6 (179-241)||(2761577-2761639)
chr6 (192-241)||(13273165-13273214)
chr6 (192-247)||(2761495-2761550)
chr6 (209-271)||(10356271-10356333)
chr6 (209-271)||(17136854-17136916)
chr6 (192-241)||(9982770-9982819)
chr6 (210-271)||(35225408-35225469)
chr6 (174-266)||(9982841-9982932)
chr6 (183-271)||(21598515-21598603)
chr6 (192-248)||(35050629-35050685)
chr6 (205-248)||(364199-364242)
chr6 (150-241)||(35225555-35225646)
chr6 (209-271)||(9982680-9982742)
chr6 (209-266)||(19557904-19557961)
chr6 (192-268)||(35225471-35225547)
[»] chr3 (44 HSPs)
chr3 (32-132)||(3378911-3379011)
chr3 (153-271)||(47891269-47891387)
chr3 (150-268)||(25848444-25848562)
chr3 (162-271)||(26976386-26976495)
chr3 (153-218)||(40286398-40286463)
chr3 (174-271)||(47573765-47573862)
chr3 (152-271)||(32186621-32186740)
chr3 (205-271)||(26976497-26976563)
chr3 (153-247)||(28813931-28814025)
chr3 (162-271)||(39714518-39714626)
chr3 (174-238)||(14624149-14624213)
chr3 (153-241)||(27768406-27768494)
chr3 (153-241)||(51833356-51833444)
chr3 (192-247)||(43650078-43650133)
chr3 (209-271)||(46337512-46337574)
chr3 (186-248)||(50332526-50332588)
chr3 (162-247)||(36900032-36900117)
chr3 (192-248)||(46337595-46337651)
chr3 (192-247)||(14624235-14624290)
chr3 (192-247)||(14964923-14964978)
chr3 (204-271)||(25848357-25848424)
chr3 (192-271)||(40286308-40286387)
chr3 (150-248)||(43650141-43650240)
chr3 (192-271)||(47573884-47573962)
chr3 (209-271)||(32186472-32186534)
chr3 (192-237)||(49364405-49364450)
chr3 (204-248)||(36667280-36667324)
chr3 (183-271)||(47069598-47069686)
chr3 (209-268)||(3169726-3169785)
chr3 (192-247)||(18020010-18020065)
chr3 (204-247)||(27658015-27658058)
chr3 (193-268)||(27768506-27768581)
chr3 (193-247)||(252140-252194)
chr3 (192-270)||(13902992-13903070)
chr3 (209-271)||(43649994-43650056)
chr3 (183-233)||(45131613-45131663)
chr3 (209-271)||(47069538-47069600)
chr3 (209-271)||(47573705-47573767)
chr3 (209-247)||(47891143-47891181)
chr3 (192-265)||(3169544-3169617)
chr3 (174-271)||(42866061-42866158)
chr3 (153-248)||(5442548-5442644)
chr3 (192-248)||(36374896-36374952)
chr3 (192-240)||(40209863-40209911)
[»] chr7 (26 HSPs)
chr7 (20-146)||(22026565-22026691)
chr7 (192-271)||(40951832-40951911)
chr7 (192-271)||(6694718-6694797)
chr7 (192-271)||(22750386-22750465)
chr7 (152-270)||(4048273-4048391)
chr7 (150-271)||(3198281-3198402)
chr7 (174-247)||(29019342-29019415)
chr7 (192-271)||(11975517-11975596)
chr7 (209-271)||(42312769-42312831)
chr7 (179-271)||(11975615-11975708)
chr7 (143-232)||(23164038-23164127)
chr7 (150-246)||(27280709-27280805)
chr7 (192-248)||(29710508-29710564)
chr7 (192-248)||(44293865-44293921)
chr7 (192-247)||(4048401-4048456)
chr7 (192-271)||(30869588-30869667)
chr7 (162-268)||(26978297-26978403)
chr7 (209-271)||(27576596-27576658)
chr7 (209-271)||(44294037-44294099)
chr7 (154-247)||(43258405-43258498)
chr7 (198-271)||(44293966-44294039)
chr7 (193-241)||(27576520-27576568)
chr7 (192-271)||(6068722-6068801)
chr7 (204-247)||(40951724-40951767)
chr7 (192-247)||(43258338-43258393)
chr7 (150-218)||(22026410-22026477)
[»] chr8 (24 HSPs)
chr8 (150-236)||(27855714-27855799)
chr8 (163-271)||(9089978-9090086)
chr8 (199-271)||(14550204-14550278)
chr8 (150-271)||(9399972-9400094)
chr8 (153-271)||(36052996-36053114)
chr8 (153-238)||(14550101-14550186)
chr8 (174-271)||(24909574-24909671)
chr8 (192-265)||(28618825-28618898)
chr8 (192-244)||(14895020-14895072)
chr8 (192-248)||(20209353-20209409)
chr8 (192-248)||(20229061-20229117)
chr8 (192-248)||(27127967-27128023)
chr8 (192-271)||(6220372-6220450)
chr8 (192-267)||(24793035-24793110)
chr8 (209-271)||(20209525-20209587)
chr8 (209-271)||(20229233-20229295)
chr8 (174-248)||(41151498-41151572)
chr8 (198-271)||(20209454-20209527)
chr8 (198-271)||(20229162-20229235)
chr8 (211-268)||(27855570-27855627)
chr8 (192-248)||(9399909-9399964)
chr8 (223-271)||(14549968-14550016)
chr8 (204-267)||(41151606-41151669)
chr8 (210-271)||(9399826-9399887)
[»] scaffold0157 (2 HSPs)
scaffold0157 (192-268)||(21708-21784)
scaffold0157 (180-248)||(21613-21681)
[»] scaffold0128 (1 HSPs)
scaffold0128 (156-247)||(2475-2566)
[»] scaffold0279 (2 HSPs)
scaffold0279 (209-271)||(1200-1262)
scaffold0279 (193-241)||(1124-1172)
[»] scaffold0018 (3 HSPs)
scaffold0018 (209-271)||(161414-161476)
scaffold0018 (192-241)||(161593-161642)
scaffold0018 (207-271)||(161474-161538)
[»] scaffold0578 (1 HSPs)
scaffold0578 (208-271)||(2445-2509)
[»] scaffold0002 (1 HSPs)
scaffold0002 (198-246)||(12143-12191)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 42)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 319
Target Start/End: Complemental strand, 35188224 - 35187918
Alignment:
Q  9 aaccaactttggccctctcattgtcatcctttatgaacctcaaatcgaagccattatacacagaataattgataacaacttcccttaatttttcctttga 108  Q
    |||||||| || ||||||||||||||||||||||     |||||||||||||||||||||||||| ||||||||||   |||||| |||| |||||||||    
T  35188224 aaccaactctgaccctctcattgtcatcctttat-----tcaaatcgaagccattatacacagaaaaattgataac---ttccctgaattcttcctttga 35188133  T
Q  109 tgagaatttacatcctaatgtccatcgtttacaaacttaattgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgttta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| ||||||||||    
T  35188132 tgagaatttacatcctaatgtccatcgtttacaaacttaattgccacatcatcgtttttataacgtttgattaacataaacagtaaattaaaaatgttta 35188033  T
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctat--atattacaaacctc--aannnnnnnngaaggatattacaaacgtcaaactt 304  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||  ||||||||||||||  ||        |||||||| ||||||| |||||||     
T  35188032 caaacttaaatgatttatgtgtgaccaaaataacttaaaatacctatatatattacaaacctcaaaattttttttgaaggataatacaaacctcaaacta 35187933  T
Q  305 aaagttaaagaatcg 319  Q
    |||||||||||||||    
T  35187932 aaagttaaagaatcg 35187918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 24 - 271
Target Start/End: Complemental strand, 7210125 - 7209858
Alignment:
Q  24 tctcattgtcatcctttatgaacctcaaatcgaagccattatacacagaataattgataacaacttcccttaatttttcctttgatgagaatttacatcc 123  Q
    ||||||| |||| ||||||||| |||||||||||| | ||||||||| |||||||||||||| ||||| | || | |||||||||||| ||||||||||     
T  7210125 tctcattttcattctttatgaatctcaaatcgaagtcgttatacacaaaataattgataacagcttccttgaactattcctttgatgaaaatttacatca 7210026  T
Q  124 taatgtccatcgtttacaa--------------------acttaattgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaat 203  Q
    |||||||||||||||||||                    ||||||||| ||||||||||||||| ||| ||||| |||| | ||| | |||||||||||     
T  7210025 taatgtccatcgtttacaaatcttaccgccatatcttacacttaattgtcacatcatcgtttttgtaatgtttggttaacataagaactaaattgaaaac 7209926  T
Q  204 gtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||||||| || ||||||||||||||||||| |||||  || ||| |||||||||||||||    
T  7209925 gtttacaaacttaaaggacttatgtgtgaccaaaataacttaaatgacgtatttattacaaacctcaa 7209858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 271
Target Start/End: Original strand, 36760767 - 36760865
Alignment:
Q  173 gtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||| |||||||||| | ||||||||||||||||||||||| ||| || |||||||||||| |||||| ||||| || |||| | |||||||||||||    
T  36760767 gtttggttaatagaaggactaaattgaaaatgtttacaaactaaaaagacttatgtgtgaccgaaataacttaaattatctatctgttacaaacctcaa 36760865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 28559384 - 28559305
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||| ||||||||||||||| || ||||||||||||||||||| |||||| ||| || | |||||||||||||    
T  28559384 taaattgaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataacttaaaggaccaatctgttacaaacctcaa 28559305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 5746265 - 5746350
Alignment:
Q  162 gtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||||| ||||||||| |||| ||||  | |||||| |||| |||||||||||||||||| |||||| ||||||||||||||||||    
T  5746265 gtttttgtaacgtttggttaacagaaagactaaattaaaaacgtttacaaacttaaatgacttatgtatgaccaaaataatttaaa 5746350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 20928007 - 20927915
Alignment:
Q  179 ttaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||| | ||||| ||||||||||||||||||||| || |||  |||||||||||||| |||||  ||| || |||||||||||||||    
T  20928007 ttaatagaaggactaaatcgaaaatgtttacaaacttaaaagacttacttgtgaccaaaataacttaaatgaccaatttattacaaacctcaa 20927915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 35812062 - 35812153
Alignment:
Q  150 tgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataa 241  Q
    ||||||||||| |||||| ||| ||||| |||||||||  | |||| | ||||| |||| ||| ||||||||||||||||||||||||||||    
T  35812062 tgccacatcattgtttttgtaaagtttggttaatagaatgactaaaataaaaatatttataaatttaaatgatttatgtgtgaccaaaataa 35812153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 267
Target Start/End: Complemental strand, 1996333 - 1996216
Alignment:
Q  150 tgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagt 249  Q
    ||||||||||| |||||| ||| ||||| |||  | ||  | ||||||||||| ||||||||||||| | || ||||||||||||||||||| ||||||     
T  1996333 tgccacatcattgtttttgtaatgtttggttatcaaaaagactaaattgaaaacgtttacaaacttataggacttatgtgtgaccaaaataacttaaagg 1996234  T
Q  250 acctatatattacaaacc 267  Q
    ||  || |||||||||||    
T  1996233 actaatctattacaaacc 1996216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 7210214 - 7210310
Alignment:
Q  153 cacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagt 249  Q
    ||||||||  ||||| |||||||| ||||| ||||  | |||||| |||| |||||||||||||||||| |||||||  |||||||||| |||||||    
T  7210214 cacatcattatttttgtaacgtttaattaacagaatgactaaatttaaaacgtttacaaacttaaatgacttatgtgcaaccaaaataacttaaagt 7210310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 16327247 - 16327168
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||| ||||||||||||||| || |||||||| |||||||||| |||||  ||| || | |||||||||||||    
T  16327247 taaattgaaaacgtttacaaacttaaaggacttatgtgttaccaaaataacttaaacgaccaatctgttacaaacctcaa 16327168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 28559424 - 28559503
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||| ||||| ||||||||| || ||||||||||| |||||||||||||| ||| || | ||| |||||||||    
T  28559424 taaattgaaaacgtttataaacttaaaggacttatgtgtgactaaaataatttaaaggaccaatctgttataaacctcaa 28559503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 36759888 - 36759817
Alignment:
Q  72 aataattgataacaacttcccttaatttttcctttgatgagaatttacatcctaatgtccatcgtttacaaa 143  Q
    |||||||||||||||||||| | || | ||| |||||||||||| ||||||||||| || ||||||||||||    
T  36759888 aataattgataacaacttccttgaactcttcatttgatgagaatatacatcctaatatctatcgtttacaaa 36759817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 38682793 - 38682872
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||| ||||||||||||||||||||| || |||||||| |||||||||| || ||| | | || |||||||||||||||    
T  38682793 taaatcgaaaatgtttacaaacttaaaagacttatgtgtaaccaaaataactttaaggatcaatctattacaaacctcaa 38682872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 4943069 - 4943143
Alignment:
Q  174 tttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatg-atttatgtgtgaccaaaataatttaaa 247  Q
    |||| |||||||||  | ||||||||||||||||||||||||||| | | ||||||||||||||||||| |||||    
T  4943069 tttggttaatagaatgactaaattgaaaatgtttacaaacttaaaagaacttatgtgtgaccaaaataacttaaa 4943143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 4943166 - 4943228
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||| || |||||||||| ||||||||||||||||||| |||| ||||||| |||||    
T  4943166 caaacttaaaggacttatgtgtgatcaaaataatttaaagtaccaatatgttacaaatctcaa 4943228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 271
Target Start/End: Complemental strand, 25456443 - 25456345
Alignment:
Q  173 gtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||| |||||||||| | ||||| |||||  ||||| |||||||| || |||| |||||||||||||| |||||| ||| || | |||||||||||||    
T  25456443 gtttgcttaatagaaggactaaatcgaaaacatttaccaacttaaaagacttatttgtgaccaaaataacttaaaggaccaatctgttacaaacctcaa 25456345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 35461508 - 35461446
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||| | || ||||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  35461508 caaacttacaggacttatgtgtgaccaaaataacttaaaggaccaatatattacaaacctcaa 35461446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 35461701 - 35461763
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||| |||||||| ||||||||||||||||||| |||||| ||| || |||||||||||||||    
T  35461701 caaaattaaatgacttatgtgtgaccaaaataacttaaaggaccaatctattacaaacctcaa 35461763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 35812181 - 35812238
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaac 266  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||| || ||||||||||    
T  35812181 caaacttaaatgacttatgcgtgaccaaaataatttaaaggaccaatctattacaaac 35812238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 4943047 - 4942991
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    |||||| |||||||||||||||||||| || |||||| ||| |||||||||||||||    
T  4943047 taaattaaaaatgtttacaaacttaaaggacttatgtatgatcaaaataatttaaag 4942991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 1996341 - 1996420
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||| ||||||  |||||||||||||||  ||||| |||||||||||||||||||| | | || | |||||||||||||    
T  1996341 taaatcgaaaatccttacaaacttaaatggcttatgagtgaccaaaataatttaaaggaacaatctcttacaaacctcaa 1996420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 16327287 - 16327366
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||| |||||||||||||||  | |||| |||||||||||||| |||||| | | || | |||||||||||||    
T  16327287 taaattgaaaacgtttacaaacttaaagtacttatttgtgaccaaaataacttaaaggatcaatctgttacaaacctcaa 16327366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 36759752 - 36759673
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||||  |||||||||||||| || ||||  |||||||||||||||||||| || ||| | |||||||| ||||    
T  36759752 taaattgaaaacatttacaaacttaaaggacttataagtgaccaaaataatttaaagaacttatctgttacaaacatcaa 36759673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 10827275 - 10827349
Alignment:
Q  174 tttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    |||| ||||| |||| | ||||| ||||| ||||||||||||||| || || | |||||||||||||||||||||    
T  10827275 tttggttaatggaaggactaaatcgaaaacgtttacaaacttaaaggacttgtttgtgaccaaaataatttaaag 10827349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 271
Target Start/End: Complemental strand, 35461604 - 35461506
Alignment:
Q  173 gtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||| |||||| ||| | ||||| |||||  |||||||||||||| || |||| ||||| ||||||||||||||| ||| || | |||||||| ||||    
T  35461604 gtttggttaatataaggactaaatcgaaaacttttacaaacttaaaggacttatttgtgatcaaaataatttaaaggaccaatctgttacaaacttcaa 35461506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 36760668 - 36760610
Alignment:
Q  9 aaccaactttggccctctcattgtcatcctttatgaacctcaaatcgaagccattatac 67  Q
    ||||||||||| |||||||||| ||||  |||||||||||||||| |||||| ||||||    
T  36760668 aaccaactttgaccctctcattatcattttttatgaacctcaaattgaagccgttatac 36760610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 38682785 - 38682727
Alignment:
Q  150 tgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgttta 208  Q
    ||||| || ||||||||| ||| |||||||||||||||| | |||||||||||||||||    
T  38682785 tgccatattatcgtttttgtaaagtttgattaatagaagaactaaattgaaaatgttta 38682727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 35813477 - 35813388
Alignment:
Q  152 ccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataa 241  Q
    |||||||||||||||| ||   |||| |||||| ||  | || |||||||| ||||||||||||||| || ||||||||||| |||||||    
T  35813477 ccacatcatcgtttttgtagaatttggttaataaaaagactatattgaaaacgtttacaaacttaaaggacttatgtgtgactaaaataa 35813388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 37642961 - 37642888
Alignment:
Q  174 tttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||| |||||||||  | ||||| ||||| ||||||||||||||| ||||||| || ||||||||||| |||||    
T  37642961 tttggttaatagaatgactaaatcgaaaacgtttacaaacttaaaggatttatttgagaccaaaataacttaaa 37642888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 37642994 - 37643038
Alignment:
Q  204 gtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    ||||||||||||||| || |||| |||||||||||||||||||||    
T  37642994 gtttacaaacttaaaggacttatttgtgaccaaaataatttaaag 37643038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 23662026 - 23661971
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||||| ||||  |||||||||||||| || ||||||||||||||||||| |||||    
T  23662026 taaatttaaaacttttacaaacttaaaagacttatgtgtgaccaaaataacttaaa 23661971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 23796544 - 23796599
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||||| ||||  |||||||||||||| || ||||||||||||||||||| |||||    
T  23796544 taaatttaaaacttttacaaacttaaaagacttatgtgtgaccaaaataacttaaa 23796599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 19550171 - 19550109
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||| || |||||||| |||||||||| |||||| | | || |||||||||||||||    
T  19550171 caaacttaaaagacttatgtgtcaccaaaataacttaaagaatcaatctattacaaacctcaa 19550109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 23662144 - 23662206
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||  | |||||||| |||||||||| |||||| ||| || |||||||||||||||    
T  23662144 caaacttaaagaacttatgtgtaaccaaaataacttaaaggaccaatttattacaaacctcaa 23662206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 25456476 - 25456542
Alignment:
Q  205 tttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||| ||||||||| || || | |||||||||||||| |||||| ||| || |||||||||||||||    
T  25456476 tttaaaaacttaaaagaattctttgtgaccaaaataacttaaaggaccaatctattacaaacctcaa 25456542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 38680773 - 38680719
Alignment:
Q  193 aaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||||||||||||||||||| ||||| ||||| ||| | |||||||||| |||||    
T  38680773 aaattgaaaatgtttacaaatttaaaggatttttgtataaccaaaataacttaaa 38680719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 35813209 - 35813172
Alignment:
Q  210 aaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  35813209 aaacttaaatgacttatgtgtgaccaaattaatttaaa 35813172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 20181489 - 20181441
Alignment:
Q  193 aaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataa 241  Q
    ||||||||||  ||||||||||||||||| |||| | ||||||||||||    
T  20181489 aaattgaaaacatttacaaacttaaatgacttatatttgaccaaaataa 20181441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 23796430 - 23796382
Alignment:
Q  223 ttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||| |||||||||| |||||| ||| || |||||||||||||||    
T  23796430 ttatgtgtaaccaaaataacttaaaggaccaatttattacaaacctcaa 23796382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 33491661 - 33491585
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacct 268  Q
    |||||||||||| |||||||| ||||| || |||| ||||| |||||||| |||||| ||  ||  |||||||||||    
T  33491661 taaattgaaaatttttacaaagttaaaggacttatctgtgatcaaaataacttaaaggactaattgattacaaacct 33491585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 35812047 - 35811999
Alignment:
Q  199 aaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    ||||||||||||||||||||  | |||| | ||||||||||||||||||    
T  35812047 aaaatgtttacaaacttaaagtacttatatatgaccaaaataatttaaa 35811999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 35813478 - 35813542
Alignment:
Q  183 tagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||||| | |||||||||||  ||||||| ||||||||| |||||| ||| |||||||| |||||    
T  35813478 tagaagaactaaattgaaaacatttacaatcttaaatgacttatgtatgagcaaaataacttaaa 35813542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 29 - 160
Target Start/End: Complemental strand, 40119788 - 40119657
Alignment:
Q  29 ttgtcatcctttatgaacctcaaatcgaagccattatacacagaataattgataacaacttcccttaatttttcctttgatgagaatttacatcctaatg 128  Q
    ||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| | || | || ||||||||||||||||||||||||||    
T  40119788 ttgtcattctttatgaacctcaaatcgaagccattattcacaaaataattgataacaacttccttgaactctttctttgatgagaatttacatcctaatg 40119689  T
Q  129 tccatcgtttacaaacttaattgccacatcat 160  Q
    | ||||| |||||||||||| |||||||||||    
T  40119688 ttcatcgcttacaaacttaactgccacatcat 40119657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 17232119 - 17231998
Alignment:
Q  150 tgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagt 249  Q
    |||||||||||||||||| ||| ||||| |||| ||||| | ||||||||||| ||||||||||||||| || |||||||||| |||||||| |||||      
T  17232119 tgccacatcatcgtttttgtaatgtttggttaacagaagaactaaattgaaaacgtttacaaacttaaaagacttatgtgtgatcaaaataacttaaaag 17232020  T
Q  250 acctatatattacaaacctcaa 271  Q
    || ||| | |||||||||||||    
T  17232019 acttatctgttacaaacctcaa 17231998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 12592367 - 12592273
Alignment:
Q  153 cacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    ||||||||||||||| ||| ||||| || | ||||  | ||||||||||| ||||||||||||| | |||||||||||||||||||||| |||||    
T  12592367 cacatcatcgtttttgtaatgtttggttgacagaatgactaaattgaaaacgtttacaaacttacaagatttatgtgtgaccaaaataacttaaa 12592273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 193 - 271
Target Start/End: Complemental strand, 40395247 - 40395169
Alignment:
Q  193 aaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||| | ||||||||||||| |||||||||||||||||||||| |||||| ||  |||| |||||||||||||    
T  40395247 aaattgaaaacgcttacaaacttaaaagatttatgtgtgaccaaaataacttaaagaactaatatgttacaaacctcaa 40395169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 51950658 - 51950564
Alignment:
Q  153 cacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    ||||||||| ||||| |||||| |  |||||||||| | |||||||||||  |||||||||||||| || ||||||||||||||||||| |||||    
T  51950658 cacatcatcatttttgtaacgtctcgttaatagaaggactaaattgaaaacatttacaaacttaaaggacttatgtgtgaccaaaataacttaaa 51950564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 2470058 - 2470175
Alignment:
Q  154 acatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacct 253  Q
    |||||||| ||||| ||||||||| |||| | ||| | ||||| | ||| || |||| ||| ||| || ||||||||||||||||||| |||||| |||     
T  2470058 acatcatcatttttttaacgtttggttaacataaggactaaatcggaaaggtatacatactaaaaagacttatgtgtgaccaaaataacttaaaggacca 2470157  T
Q  254 atatattacaaacctcaa 271  Q
    ||||||||||||||||||    
T  2470158 atatattacaaacctcaa 2470175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 45038364 - 45038443
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||| ||||| ||||||||||||||| || ||||||||||||||||||| |||||| ||| || | |||||||||||||    
T  45038364 taaatcgaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataacttaaaggaccaatctgttacaaacctcaa 45038443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 12498769 - 12498693
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacct 268  Q
    |||||||||| | |||||||||||||| |||||||||||||||||||||| |||||  | | ||||||| |||||||    
T  12498769 taaattgaaattttttacaaacttaaaggatttatgtgtgaccaaaataacttaaaagatcaatatattgcaaacct 12498693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 24684197 - 24684142
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    ||||||||||| ||||||||||||||| ||||||||||| |||||||||| |||||    
T  24684197 taaattgaaaacgtttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 24684142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 2788032 - 2787979
Alignment:
Q  194 aattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||||||||  ||||||||||||||||| ||||||||||||||||||| |||||    
T  2788032 aattgaaaacatttacaaacttaaatgacttatgtgtgaccaaaataacttaaa 2787979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 12498796 - 12498864
Alignment:
Q  180 taatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    ||||||||| | ||||| ||||| ||||||||| ||||| || |||||||||||| |||||||||||||    
T  12498796 taatagaaggactaaatcgaaaacgtttacaaatttaaaagacttatgtgtgaccgaaataatttaaag 12498864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 2470046 - 2469969
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||| ||||| ||||||||||||||| || |||| |||||||||| |||||||||| ||| |||||||||||| |||||    
T  2470046 taaatcgaaaaggtttacaaacttaaa-gacttatatgtgaccaaa-taatttaaaggaccaatatattacaaagctcaa 2469969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 11884785 - 11884686
Alignment:
Q  172 cgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||| |||||||||| | ||||| |||||||||||||||||||||  | |||  |||||| ||||||| || ||| ||| || | |||||||||||||    
T  11884785 cgtttggttaatagaaggactaaatcgaaaatgtttacaaacttaaagaacttagttgtgactaaaataaattgaaggaccaatctgttacaaacctcaa 11884686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 26782481 - 26782560
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||||  |||||||||||||| || |||| |||||| ||||||| |||||  | | ||||||||||||||||||    
T  26782481 taaattgaaaacttttacaaacttaaaagacttatatgtgacaaaaataacttaaaaaatcaatatattacaaacctcaa 26782560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 41083191 - 41083124
Alignment:
Q  204 gtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||||||| || |||||||||| |||||||| |||||| ||| |||| |||||||| ||||    
T  41083191 gtttacaaacttaaaggacttatgtgtgatcaaaataacttaaaggaccaatatgttacaaacttcaa 41083124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 2469971 - 2469909
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||| || ||| ||||||||||||||| |||||| ||| || |||||||||||||||    
T  2469971 caaacttaaaggacttaggtgtgaccaaaataacttaaagaaccaatctattacaaacctcaa 2469909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 25055953 - 25055891
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||| ||||||||||| |||||||||| |||||| ||  || |||||||||||||||    
T  25055953 caaacttaaaggatttatgtgtcaccaaaataacttaaaggacaaatctattacaaacctcaa 25055891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 55617501 - 55617594
Alignment:
Q  153 cacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    ||||||||||||||| ||| |||| ||||| | ||| | |||||||||||  ||||||||||||||  | ||||||||||| ||||||| |||||    
T  55617501 cacatcatcgtttttgtaatgtttaattaacaaaaggactaaattgaaaacatttacaaacttaaa-cacttatgtgtgactaaaataacttaaa 55617594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 55624805 - 55624898
Alignment:
Q  153 cacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    ||||||||||||||| ||| |||| ||||| | ||| | |||||||||||  ||||||||||||||  | ||||||||||| ||||||| |||||    
T  55624805 cacatcatcgtttttgtaatgtttaattaacaaaaggactaaattgaaaacatttacaaacttaaa-cacttatgtgtgactaaaataacttaaa 55624898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 2788160 - 2788221
Alignment:
Q  210 aaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||| |||||||||||||||||||||| ||||| || | || | |||||||||||||    
T  2788160 aaacttaaaggatttatgtgtgaccaaaataacttaaaatatcaatttgttacaaacctcaa 2788221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 26782441 - 26782369
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaa 265  Q
    |||||||||||| |||||||||||||| || ||| ||||||||||||||| |||||| ||| || | |||||||    
T  26782441 taaattgaaaatttttacaaacttaaaagactta-gtgtgaccaaaataacttaaaggaccaatctgttacaaa 26782369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 51950669 - 51950746
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctc 269  Q
    ||||||||||||||||||||||||||| || |||||| | |||||| ||| |||||| ||| || ||||  |||||||    
T  51950669 taaattgaaaatgtttacaaacttaaaggacttatgtataaccaaattaacttaaagaaccaatttattgtaaacctc 51950746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 241
Target Start/End: Complemental strand, 40147139 - 40147051
Alignment:
Q  153 cacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataa 241  Q
    ||||||||||||||| ||| ||||| |||| | ||| | |||| ||||||  ||||||| |||||| || | |||||||||||||||||    
T  40147139 cacatcatcgtttttgtaatgtttggttaacataaggaataaactgaaaacatttacaaccttaaaggactcatgtgtgaccaaaataa 40147051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 9999438 - 9999383
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||||| |||| |||||||||||||||  |||||||||||||||| |||| |||||    
T  9999438 taaattcaaaacgtttacaaacttaaagaatttatgtgtgaccaatataacttaaa 9999383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 9999478 - 9999557
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||||  |||||||| |||||||| |||| |||||| ||||||| |||||  ||| || | |||||||||||||    
T  9999478 taaattgaaaacttttacaaagttaaatgacttatatgtgacaaaaataacttaaatgaccaatctgttacaaacctcaa 9999557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 24369252 - 24369331
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||| |||||  |||||||||||||| || ||| ||||||| ||||||| |||||| ||  || |||||||||||||||    
T  24369252 taaatcgaaaacatttacaaacttaaaggacttaggtgtgactaaaataacttaaaggacaaatctattacaaacctcaa 24369331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 40395275 - 40395366
Alignment:
Q  180 taatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||| | ||||| ||||| ||||||||| ||||| || |||||||||||  |||||| |||||| ||  || | |||||||||||||    
T  40395275 taatagaaggactaaatcgaaaacgtttacaaatttaaaggacttatgtgtgacagaaataacttaaaggactaatctgttacaaacctcaa 40395366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 41083242 - 41083297
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    ||||| ||||| ||||||||||||||| || |||||||||||| |||||| |||||    
T  41083242 taaatcgaaaacgtttacaaacttaaaggacttatgtgtgaccgaaataacttaaa 41083297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 45787172 - 45787117
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    ||||| ||||||||||| |||||||||||  |||||||| |||||||||| |||||    
T  45787172 taaatcgaaaatgtttataaacttaaatgtcttatgtgtaaccaaaataagttaaa 45787117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 268
Target Start/End: Original strand, 45787183 - 45787298
Alignment:
Q  153 cacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacc 252  Q
    |||||||| |||||| |||  |||| |||| ||||  | ||||||||||| |||| ||||||||||  | |||||||||| |||||||| |||||  ||     
T  45787183 cacatcattgtttttgtaatatttggttaaaagaatgactaaattgaaaacgtttgcaaacttaaaaaacttatgtgtgatcaaaataacttaaaaaact 45787282  T
Q  253 tatatattacaaacct 268  Q
     || ||||||||||||    
T  45787283 aatttattacaaacct 45787298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 53863506 - 53863585
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||||  |||||||||||||| || |||||  |||||||||||| |||||| ||| || | |||||| ||||||    
T  53863506 taaattgaaaacttttacaaacttaaaggacttatgcatgaccaaaataacttaaaggaccaatttgttacaaccctcaa 53863585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 7246289 - 7246351
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||| || |||||| |||||||||||| |||||  ||| |||| |||||||||||||    
T  7246289 caaacttaaaggacttatgtatgaccaaaataacttaaaagaccaatatgttacaaacctcaa 7246351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 41083319 - 41083381
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||||||  ||| |||||||||||||| |||||| ||| || | |||||||||||||    
T  41083319 caaacttaaatgacatatatgtgaccaaaataacttaaaggaccaatctgttacaaacctcaa 41083381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 46196182 - 46196125
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaac 266  Q
    |||||||||| || |||| |||||||||||||| |||||| || ||| ||||||||||    
T  46196182 caaacttaaaggacttatttgtgaccaaaataacttaaaggacatatctattacaaac 46196125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 53863466 - 53863393
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaa 265  Q
    ||||||||||   |||||||||||||| || ||||||||||| ||||||| |||||| ||| || | |||||||    
T  53863466 taaattgaaatcttttacaaacttaaaggacttatgtgtgactaaaataacttaaaggaccaatctgttacaaa 53863393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 55617477 - 55617440
Alignment:
Q  205 tttacaaacttaaatgatttatgtgtgaccaaaataat 242  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  55617477 tttacaaacttaaatgttttatgtgtgactaaaataat 55617440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 55624781 - 55624744
Alignment:
Q  205 tttacaaacttaaatgatttatgtgtgaccaaaataat 242  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  55624781 tttacaaacttaaatgttttatgtgtgactaaaataat 55624744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 41519347 - 41519387
Alignment:
Q  199 aaaatgtttacaaacttaaatgatttatgtgtgaccaaaat 239  Q
    |||||||||||||||||||| || ||||||||||| |||||    
T  41519347 aaaatgtttacaaacttaaaagacttatgtgtgactaaaat 41519387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 12 - 271
Target Start/End: Original strand, 4188833 - 4189080
Alignment:
Q  12 caactttggccctctcattgtcatcctttatgaacctcaaatcgaagccattatacacagaataattgataacaacttcccttaatttttcctttgatga 111  Q
    |||||||| |||||||||| |||| |||||||||||||||||||||| ||| ||||| |||||||||||||||||||||| | || | ||  ||          
T  4188833 caactttgaccctctcattttcattctttatgaacctcaaatcgaagtcat-atacaaagaataattgataacaacttccttgaactcttattta----- 4188926  T
Q  112 gaatttacatcctaatgtccatcgtttacaaacttaattgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaa 211  Q
        ||||||| |||||||||||||||| |||||||| || |||| ||||  |||||||||||||| |||| | ||  | ||||||||||| ||||| ||    
T  4188927 ----ttacatcataatgtccatcgtttataaacttaactgtcacaacatc--ttttataacgtttggttaacaaaatgactaaattgaaaacgtttataa 4189020  T
Q  212 acttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||  || |||| ||||| |||||||| |||||| ||||||||||||||||||||||    
T  4189021 acttaatggacttatatgtgatcaaaataacttaaaggacctatatattacaaacctcaa 4189080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 6694324 - 6694436
Alignment:
Q  70 agaataattgataacaacttcccttaatttttcctttgatgagaatttacatcctaatgtccatcgtttacaaacttaattgccacatcatcgtttttat 169  Q
    |||||||||||||||||||||| | || | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  6694324 agaataattgataacaacttccttaaactcttcctttgatgagaatttacatcctaatgtccatcgtttacaaacttaattgtcacatcatcgtttttgt 6694423  T
Q  170 aacgtttgattaa 182  Q
    | |||||| ||||    
T  6694424 atcgtttggttaa 6694436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 271
Target Start/End: Original strand, 11791584 - 11791866
Alignment:
Q  9 aaccaactttggccctctcattgtcatcctttatgaacctcaaatcgaagccattatacacagaataattgataacaacttcccttaatttttcctttga 108  Q
    |||||||| || | ||||||||||||| ||||||||||||| ||||||||| |||||||||| ||| |||||||| | ||||| | || | |||||||||    
T  11791584 aaccaactctgactctctcattgtcattctttatgaacctcgaatcgaagctattatacacataatgattgataatagcttccttgaactcttcctttga 11791683  T
Q  109 tgagaatttacatcctaatgtccatcgtttacaaacttaattgccac--------------------atcatcgtttttataacgtttgattaatagaag 188  Q
    || |||||||||||||||||| |||| ||||||||||||| ||||||                    |||||||||||| ||||||||| |||| | ||     
T  11791684 tgggaatttacatcctaatgttcatcatttacaaacttaactgccacttcatacacttaactgccagatcatcgtttttgtaacgtttggttaacaaaat 11791783  T
Q  189 cagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
     | ||||||||||| ||||||||||||| | || ||||||||||||||||||| |||||  || ||| |||||||||| ||||    
T  11791784 gactaaattgaaaacgtttacaaacttataggacttatgtgtgaccaaaataacttaaatgacatatctattacaaacttcaa 11791866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 268
Target Start/End: Complemental strand, 12612571 - 12612459
Alignment:
Q  154 acatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacct 253  Q
    |||||||||||||  ||| ||||| |||| ||||| |||||||||||||  ||||||||||||||||| |||||||||| ||||||||||||||  |||     
T  12612571 acatcatcgttttg-taatgtttggttaacagaag-agtaaattgaaaacatttacaaacttaaatgacttatgtgtgatcaaaataatttaaaagacca 12612474  T
Q  254 atatattacaaacct 268  Q
    || ||||||||||||    
T  12612473 atctattacaaacct 12612459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 3876884 - 3877005
Alignment:
Q  150 tgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagt 249  Q
    |||| ||||||||||||| ||| ||||| |||||||||| | ||||||| ||| ||||||| || |||| || ||||||||||||||||||| |||||      
T  3876884 tgccccatcatcgtttttgtaatgtttggttaatagaaggactaaattggaaaggtttacatacgtaaaggacttatgtgtgaccaaaataacttaaaag 3876983  T
Q  250 acctatatattacaaacctcaa 271  Q
    | | || |||||||||||||||    
T  3876984 atcaatttattacaaacctcaa 3877005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 36694502 - 36694581
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||| | |||||||||||||| || |||||||||||||||||||||||||| ||| || | |||||||||||||    
T  36694502 taaattgaaattttttacaaacttaaaggacttatgtgtgaccaaaataatttaaaggaccaatctgttacaaacctcaa 36694581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 14166248 - 14166119
Alignment:
Q  8 gaaccaactttggccctctcattgtcatcctttatgaacctcaaatcgaagccattatacacagaataattgataacaacttcccttaatttttcctttg 107  Q
    ||||||||| ||  ||||| ||| |||| ||||||||| ||||||| |||| || |||||||| |||||||||||| | ||||| | || | ||||||||    
T  14166248 gaaccaactctgaacctctaattttcattctttatgaaactcaaattgaagtcactatacacaaaataattgataaaagcttccttaaactcttcctttg 14166149  T
Q  108 atgagaatttacatcctaatgtccatcgttt 138  Q
    |||| || |||||| ||||||||||||||||    
T  14166148 atgaaaacttacat-ctaatgtccatcgttt 14166119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 5009354 - 5009257
Alignment:
Q  150 tgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||||||||||||||||| ||| ||||| |||| ||||| | |||||||||||  ||||||||| |||| || |||||||||| |||||||| |||||    
T  5009354 tgccacatcatcgtttttgtaatgtttggttaagagaaggactaaattgaaaacatttacaaacataaaagacttatgtgtgatcaaaataacttaaa 5009257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 265
Target Start/End: Complemental strand, 6694217 - 6694104
Alignment:
Q  153 cacatcatcgtttttataacgtttgattaatagaagcagtaaattg-aaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtac 251  Q
    |||||||| ||||||||||||||||||||| ||||  | | | ||| ||||| |||||||||||||| ||||||||||||| |||||||| |||||  ||    
T  6694217 cacatcattgtttttataacgtttgattaacagaaagactcatttgaaaaatctttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgac 6694118  T
Q  252 ctatatattacaaa 265  Q
     ||| |||||||||    
T  6694117 ttatttattacaaa 6694104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 25895064 - 25895160
Alignment:
Q  152 ccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    |||||||||||||||| ||| ||||| |||| | ||| | ||||||||||| ||||||||||| ||| || ||||||||||| ||||||| ||||||    
T  25895064 ccacatcatcgtttttgtaatgtttggttaacaaaaggactaaattgaaaacgtttacaaactgaaaggacttatgtgtgactaaaataacttaaag 25895160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 11791496 - 11791392
Alignment:
Q  154 acatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacct 253  Q
    |||||||||||||| |||||||||||||| ||||        ||| ||| |||||||||||||||| | ||| ||||||||||||||||||||| |||||    
T  11791496 acatcatcgtttttgtaacgtttgattaacagaa--------ttggaaacgtttacaaacttaaataacttacgtgtgaccaaaataatttaaaatacct 11791405  T
Q  254 atatattacaaac 266  Q
    || ||||| ||||    
T  11791404 atttattataaac 11791392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 31630222 - 31630318
Alignment:
Q  150 tgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||||||||||||||||| |||| |||| |||| | ||  | |||||||||||  |||||||||||||| || ||||||||||||||||||| |||||    
T  31630222 tgccacatcatcgtttttgtaacatttggttaacaaaatgactaaattgaaaacatttacaaacttaaa-gacttatgtgtgaccaaaataacttaaa 31630318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 4188760 - 4188657
Alignment:
Q  143 acttaattgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataat 242  Q
    |||||| || ||| |||| |||||| ||| ||||| |||||||||  | ||||||||||| ||||| ||||||||| || || ||||||||||||||||     
T  4188760 acttaagtgtcacgtcattgtttttgtaatgtttggttaatagaatgaataaattgaaaacgtttagaaacttaaaggacttgtgtgtgaccaaaataac 4188661  T
Q  243 ttaa 246  Q
    ||||    
T  4188660 ttaa 4188657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 5009362 - 5009440
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||| ||||||||||||||| |||| ||||||||| ||||||| |||||| | | |||| |||||||||||||    
T  5009362 taaattgaaaacgtttacaaacttaaaggatt-atgtgtgacaaaaataacttaaaggatcaatatgttacaaacctcaa 5009440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 31630214 - 31630135
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||| ||||| ||||||||||||||| || ||||||||||||||||||| |||||| | | || | |||||||||||||    
T  31630214 taaatcgaaaacgtttacaaacttaaaagacttatgtgtgaccaaaataacttaaaggatcaatctgttacaaacctcaa 31630135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 43699440 - 43699506
Alignment:
Q  205 tttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||||||| || ||||||||||||||||||| |||||| | | |||| |||||||||||||    
T  43699440 tttacaaacttaaaagacttatgtgtgaccaaaataaattaaaggatcaatatgttacaaacctcaa 43699506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 4511537 - 4511488
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataa 241  Q
    ||||| |||||||||||||||||||||||| |||||||| ||||||||||    
T  4511537 taaatcgaaaatgtttacaaacttaaatgacttatgtgtaaccaaaataa 4511488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 14166347 - 14166432
Alignment:
Q  162 gtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||||| |||| |||| |||||||||| | ||||||||||| ||||| ||||||||| | ||||||||||| ||| |||| |||||    
T  14166347 gtttttgtaacatttgcttaatagaaggactaaattgaaaacgtttaaaaacttaaagggtttatgtgtgaacaagataacttaaa 14166432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 271
Target Start/End: Complemental strand, 44556692 - 44556595
Alignment:
Q  174 tttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||| |||||||||| | ||||||||||| || |  ||||||||| || |||||||||| |||||||| |||||| | | || |||||||||||||||    
T  44556692 tttggttaatagaagaactaaattgaaaacgtatgtaaacttaaaggacttatgtgtgatcaaaataagttaaaggatcaatttattacaaacctcaa 44556595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 29379888 - 29379960
Alignment:
Q  199 aaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||||| ||||||  | |||||||||||||||||||||||||| ||  |||| |||||||| ||||    
T  29379888 aaaatgtttacaatcttaaagaacttatgtgtgaccaaaataatttaaaggactaatatgttacaaacgtcaa 29379960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 33847622 - 33847678
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    ||||||||||||||||| ||||||||| || |||| || ||||||||||||||||||    
T  33847622 taaattgaaaatgtttaaaaacttaaaggacttatatgcgaccaaaataatttaaag 33847678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 1316172 - 1316105
Alignment:
Q  204 gtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||||||| || ||||||| || |||||||| |||||| || ||||| |||||||||||||    
T  1316172 gtttacaaacttaaaggacttatgtgcgatcaaaataacttaaagaacatatatgttacaaacctcaa 1316105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 9501054 - 9500975
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||| ||||| ||||||||||||||| || ||||||||||| ||||||| |||||| | | || | |||||||||||||    
T  9501054 taaatcgaaaacgtttacaaacttaaaggacttatgtgtgactaaaataacttaaagaagcgatctgttacaaacctcaa 9500975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 4511996 - 4511942
Alignment:
Q  193 aaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||||||||||||||||||||||||| || |||| ||||| |||||||| |||||    
T  4511996 aaattgaaaatgtttacaaacttaaaggacttatatgtgatcaaaataacttaaa 4511942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 39442306 - 39442264
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtac 251  Q
    ||||||||||||| ||||||||||| |||||||||||||||||    
T  39442306 caaacttaaatgacttatgtgtgacaaaaataatttaaagtac 39442264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 5009232 - 5009168
Alignment:
Q  208 acaaacttaaatgatttatgtgtgaccaaaataa-tttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||||||| |||||||||| |||||||| || |||| ||| || |||||||||||||||    
T  5009232 acaaacttaaatgacttatgtgtgaacaaaataacttaaaaggaccaatctattacaaacctcaa 5009168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 25895047 - 25894975
Alignment:
Q  199 aaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||||||||||||| || |||| || ||||||||||| |||||| ||| || | ||||||| |||||    
T  25895047 aaaatgtttacaaacttaaaggacttatatgcgaccaaaataacttaaaggaccaatttgttacaaatctcaa 25894975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 1316107 - 1316045
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||| |||| || ||||||||||||||||||| |||||  | |||| |||||||||||||||    
T  1316107 caaacataaaggacttatgtgtgaccaaaataacttaaacgatctatctattacaaacctcaa 1316045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 4511545 - 4511583
Alignment:
Q  150 tgccacatcatcgtttttataacgtttgattaatagaag 188  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  4511545 tgccacatcatcgtttttgtaatgtttgattaatagaag 4511583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 25895182 - 25895243
Alignment:
Q  210 aaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||| || || |||||||||||||||| |||||| ||| || | |||||||||||||    
T  25895182 aaacttaaaggacttttgtgtgaccaaaataacttaaaggaccaatctgttacaaacctcaa 25895243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 36217155 - 36217188
Alignment:
Q  215 taaatgatttatgtgtgaccaaaataatttaaag 248  Q
    ||||||| ||||||||||||||||||||||||||    
T  36217155 taaatgacttatgtgtgaccaaaataatttaaag 36217188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 3876874 - 3876838
Alignment:
Q  194 aattgaaaatgtttacaaacttaaatgatttatgtgt 230  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  3876874 aattgaaaacgtttacaaacttaaatgacttatgtgt 3876838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 4511920 - 4511868
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataattt 244  Q
    |||||| |||| ||||||||||||||| || ||||||||||  ||||||||||    
T  4511920 taaattaaaaacgtttacaaacttaaaagacttatgtgtgattaaaataattt 4511868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 14166466 - 14166514
Alignment:
Q  223 ttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||| ||||||| |||||| |||||| |||||||||| ||||    
T  14166466 ttatgtgtgacaaaaataacttaaaggacctatctattacaaacatcaa 14166514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 36694462 - 36694406
Alignment:
Q  192 taaattgaaaatgtttacaaactt-aaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||||||||||| ||||||||||| ||| || |||| |||||||||||||| |||||    
T  36694462 taaattgaaaatatttacaaacttaaaaggacttatatgtgaccaaaataacttaaa 36694406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 41007258 - 41007409
Alignment:
Q  9 aaccaactttggccctctcattgtcatcctttatgaacctcaaatcgaagccattatacacagaataattgataacaacttcccttaatttttcctttga 108  Q
    |||||||| || | || |||||||||| |||||||||||||||||| |||| |||||||||| |||||||||||||| ||||  | || | |||||||||    
T  41007258 aaccaactatgactctttcattgtcattctttatgaacctcaaatcaaagctattatacacataataattgataacagcttcattgaactcttcctttga 41007357  T
Q  109 tgagaatttacatcctaatgtccatcgtttacaaacttaattgccacatcat 160  Q
    |||||||||||||| |||||||| || ||||||||| ||| | |||||||||    
T  41007358 tgagaatttacatcataatgtccgtcatttacaaacataactaccacatcat 41007409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 52913297 - 52913388
Alignment:
Q  150 tgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataa 241  Q
    |||||||||||||||||| ||| ||||| |||| ||||| | ||||| ||||| ||||||||||||||| || |||||||||| ||||||||    
T  52913297 tgccacatcatcgtttttgtaatgtttggttaacagaaggactaaatagaaaacgtttacaaacttaaaggacttatgtgtgatcaaaataa 52913388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 2633294 - 2633239
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  2633294 taaatcgaaaatgtttacaaacttaaatgatttatgtgtaaccaaaataacttaaa 2633239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 2633306 - 2633423
Alignment:
Q  154 acatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacct 253  Q
    |||||||||||||| ||| ||||| |||| | ||  | |||||| |||||||||||||| ||||| || ||||| ||||| ||||||| |||||| ||      
T  2633306 acatcatcgtttttgtaatgtttggttaacataatgactaaattaaaaatgtttacaaatttaaaggacttatgcgtgacaaaaataacttaaagaacaa 2633405  T
Q  254 atatattacaaacctcaa 271  Q
    |||| |||||||||||||    
T  2633406 atatgttacaaacctcaa 2633423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 41007432 - 41007517
Alignment:
Q  163 tttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    ||||| ||| |||||||||| ||||  | ||||||||||| ||||||||||||||| || |||| |||||||||| ||||||||||    
T  41007432 tttttgtaatgtttgattaacagaatgactaaattgaaaacgtttacaaacttaaaagacttatatgtgaccaaattaatttaaag 41007517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 1173167 - 1173258
Alignment:
Q  150 tgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataa 241  Q
    |||||||||||||||||| ||| ||||| |||| ||||  | ||||||||||| ||| ||||||| ||| || ||||||||||| |||||||    
T  1173167 tgccacatcatcgtttttgtaatgtttgtttaacagaaagactaaattgaaaacgttcacaaactcaaaggacttatgtgtgacaaaaataa 1173258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 271
Target Start/End: Complemental strand, 18608736 - 18608648
Alignment:
Q  183 tagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||| | |||||||||||  |||||||||||||| || ||| ||||||||||||||| |||||| | | || | |||||||||||||    
T  18608736 tagaaggactaaattgaaaacatttacaaacttaaaggacttaagtgtgaccaaaataacttaaagaatcaatctgttacaaacctcaa 18608648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 18981138 - 18981090
Alignment:
Q  193 aaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataa 241  Q
    |||| ||||||||||||||||||||| || |||||||||||||||||||    
T  18981138 aaatcgaaaatgtttacaaacttaaaggacttatgtgtgaccaaaataa 18981090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 1173159 - 1173105
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    ||||| ||||||||||||||||||||| || ||||||||||||||||||| |||||    
T  1173159 taaatcgaaaatgtttacaaacttaaa-gacttatgtgtgaccaaaataacttaaa 1173105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 38699114 - 38699177
Alignment:
Q  155 catcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaa 218  Q
    ||||||||||||| ||||||||| ||||  |||| | ||||||||||| |||||||||||||||    
T  38699114 catcatcgtttttgtaacgtttggttaaccgaaggattaaattgaaaacgtttacaaacttaaa 38699177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 40892488 - 40892566
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||| ||||| ||||| |||||| |||||||||| | |||||| ||||||| || || | |||||||||||||    
T  40892488 taaattgaaaacgtttaaaaactcaaatgacttatgtgtgatcgaaataacttaaagt-ccaatctgttacaaacctcaa 40892566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 7490031 - 7489993
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  7490031 caaacttaaaggatttatgtgtgaccaaaataacttaaa 7489993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 7490074 - 7490029
Alignment:
Q  226 tgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||||||||||||||| | | || |||||||||||||||    
T  7490074 tgtgtgaccaaaataatttaaaggatcaatctattacaaacctcaa 7490029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 52913211 - 52913163
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatat 257  Q
    |||||||||| || ||||||||||||||||||| |||||| ||| ||||    
T  52913211 caaacttaaaggacttatgtgtgaccaaaataacttaaaggaccaatat 52913163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 52913289 - 52913233
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    ||||| ||||| ||||||||||||||| || ||||||||||| | ||||| ||||||    
T  52913289 taaatcgaaaacgtttacaaacttaaaggacttatgtgtgactagaataacttaaag 52913233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 5197606 - 5197506
Alignment:
Q  32 tcatcctttatgaacctcaaatcgaagccattatacacagaataattgataacaacttcccttaatttttcctttgatgagaatttacatcctaatgtcc 131  Q
    |||||||||||||||||||||| | |||||||| ||||||||||||| |||||| ||||| | || | ||||||||||||||||||||||||||||||||    
T  5197606 tcatcctttatgaacctcaaattgtagccattacacacagaataatttataacagcttccttgaactcttcctttgatgagaatttacatcctaatgtcc 5197507  T
Q  132 a 132  Q
    |    
T  5197506 a 5197506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 24059856 - 24059759
Alignment:
Q  150 tgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||||||||||| ||||| |||| |||| |||||||||| | || ||| |||| ||||||||||||||| || |||||||||||||||||||||||||    
T  24059856 tgccacatcatcatttttgtaacttttggttaatagaaggactagattaaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataatttaaa 24059759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 21598634 - 21598709
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacc 267  Q
    ||||||||||| ||||||||||||||| || ||||||||||||||||||| |||||| ||| |||| |||||||||    
T  21598634 taaattgaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataacttaaaggaccaatatgttacaaacc 21598709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 364176 - 364079
Alignment:
Q  150 tgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||||||||||| ||||| ||||||||| |||||||||  | ||| |||||||||||||||||||||||  | |||| ||||||||||| || |||||    
T  364176 tgccacatcatcatttttgtaacgtttggttaatagaatgattaagttgaaaatgtttacaaacttaaagaacttatttgtgaccaaaacaacttaaa 364079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 17342629 - 17342708
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||| ||||||||||||||| || |||||||||||| |||||| |||||| ||| | || |||||||||||||    
T  17342629 taaattgaaaacgtttacaaacttaaaggacttatgtgtgaccgaaataacttaaaggaccaacatgttacaaacctcaa 17342708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 17136993 - 17136937
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    ||||||||||| ||||||||||||||| || ||||||||||||||||||| ||||||    
T  17136993 taaattgaaaacgtttacaaacttaaaagacttatgtgtgaccaaaataacttaaag 17136937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 2761577 - 2761639
Alignment:
Q  179 ttaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataa 241  Q
    |||| ||||| | ||||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  2761577 ttaacagaaggactaaattgaaaacgtttacaaacttaaaggatttatgtgtgatcaaaataa 2761639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 13273214 - 13273165
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataa 241  Q
    |||||||||||||||||||||||||||| | ||||||| |||||||||||    
T  13273214 taaattgaaaatgtttacaaacttaaataacttatgtgggaccaaaataa 13273165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 2761550 - 2761495
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    ||||||||||| ||||||||||||||| || |||||||||| |||||||| |||||    
T  2761550 taaattgaaaacgtttacaaacttaaaggacttatgtgtgatcaaaataacttaaa 2761495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 10356333 - 10356271
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||| || |||||||||||||||||||||||||| ||  || | |||||||||||||    
T  10356333 caaacttaaaggacttatgtgtgaccaaaataatttaaaggactaatttgttacaaacctcaa 10356271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 17136916 - 17136854
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||||| ||||||| ||||||||||| |||||| ||  || |||||||||||||||    
T  17136916 caaacttaaatgacttatgtgagaccaaaataacttaaaggactaatctattacaaacctcaa 17136854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 9982819 - 9982770
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataa 241  Q
    ||||||||||| ||||||||||||||| || ||||||| |||||||||||    
T  9982819 taaattgaaaacgtttacaaacttaaaagacttatgtgcgaccaaaataa 9982770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 35225469 - 35225408
Alignment:
Q  210 aaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||| ||||||||| |||||||||||| |||||| ||| || | |||||||||||||    
T  35225469 aaacttaaaggatttatgtatgaccaaaataacttaaaggaccaatttgttacaaacctcaa 35225408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 266
Target Start/End: Original strand, 9982841 - 9982932
Alignment:
Q  174 tttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaac 266  Q
    |||| |||| ||||| | ||||||||||| ||||||||||||||| || ||||||| ||| |||| || |||||| ||| |||| ||||||||    
T  9982841 tttggttaacagaaggactaaattgaaaa-gtttacaaacttaaaggacttatgtgagacaaaaagaacttaaaggaccaatatgttacaaac 9982932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 271
Target Start/End: Complemental strand, 21598603 - 21598515
Alignment:
Q  183 tagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||| | ||||| ||||| ||||| ||||||||| || ||||||| || |||||||| |||||| ||| || | |||||||||||||    
T  21598603 tagaaggactaaatcgaaaacgtttataaacttaaaggacttatgtgggatcaaaataacttaaaggaccaatctgttacaaacctcaa 21598515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 35050685 - 35050629
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    ||||| ||||| ||||| ||||||||| |||||||||||||| ||||||| ||||||    
T  35050685 taaatcgaaaacgtttataaacttaaaagatttatgtgtgacaaaaataacttaaag 35050629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 364199 - 364242
Alignment:
Q  205 tttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    |||||||||||||| || ||||||||||||||||||| ||||||    
T  364199 tttacaaacttaaaagacttatgtgtgaccaaaataacttaaag 364242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 35225555 - 35225646
Alignment:
Q  150 tgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataa 241  Q
    |||||||||||| ||||| ||| ||||  |||| | ||| | ||||||||| | ||||||||||||| | || ||||||||||| |||||||    
T  35225555 tgccacatcatcatttttgtaatgtttagttaacaaaaggactaaattgaatacgtttacaaacttataggaattatgtgtgacaaaaataa 35225646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 9982742 - 9982680
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||| || |||||||||| ||||||||||||||| |   |||| |||||||||||||    
T  9982742 caaacttaaaggacttatgtgtgatcaaaataatttaaaggatgaatatgttacaaacctcaa 9982680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 19557904 - 19557961
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaac 266  Q
    |||||||||| || |||||||||||||||||| ||||||| ||| || | ||||||||    
T  19557904 caaacttaaaagacttatgtgtgaccaaaatattttaaaggaccaatctgttacaaac 19557961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 35225547 - 35225471
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacct 268  Q
    ||||| ||||| |||||||||||||||  | |||||||||| || ||||| |||||| ||| || | ||||||||||    
T  35225547 taaatcgaaaacgtttacaaacttaaagaacttatgtgtgatcagaataacttaaaggaccaatctgttacaaacct 35225471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 3379011 - 3378911
Alignment:
Q  32 tcatcctttatgaacctcaaatcgaagccattatacacagaataattgataacaacttcccttaatttttcctttgatgagaatttacatcctaatgtcc 131  Q
    |||||||||||||||||||||| | |||||||| ||||||||||||| |||||| ||||| | || | ||||||||||||||||||||||||||||||||    
T  3379011 tcatcctttatgaacctcaaattgtagccattacacacagaataatttataacagcttccttgaactcttcctttgatgagaatttacatcctaatgtcc 3378912  T
Q  132 a 132  Q
    |    
T  3378911 a 3378911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 271
Target Start/End: Original strand, 47891269 - 47891387
Alignment:
Q  153 cacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacc 252  Q
    ||||||||||||||| ||||||||| |||| | ||| | ||||||||||| ||||||||||||||| || ||||||||||||||||||| |||||| |||    
T  47891269 cacatcatcgtttttgtaacgtttggttaacataaggactaaattgaaaacgtttacaaacttaaaagacttatgtgtgaccaaaataacttaaaggacc 47891368  T
Q  253 tatatattacaaacctcaa 271  Q
     |||| || ||||||||||    
T  47891369 aatatgttgcaaacctcaa 47891387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 150 - 268
Target Start/End: Original strand, 25848444 - 25848562
Alignment:
Q  150 tgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagt 249  Q
    |||||||| ||| ||||| ||| ||||| |||| ||||| | |||||||||||  |||||||||||||| ||  |||||||||||||||||| ||||||     
T  25848444 tgccacataatcatttttgtaatgtttggttaacagaaggactaaattgaaaacatttacaaacttaaaggacatatgtgtgaccaaaataacttaaagg 25848543  T
Q  250 acctatatattacaaacct 268  Q
    ||| || | ||||||||||    
T  25848544 accaatgtgttacaaacct 25848562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 26976495 - 26976386
Alignment:
Q  162 gtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatatta 261  Q
    |||||| ||| ||||| ||||||||||   ||||||||||| | ||||||||||||| ||||| ||||| |||||||||| ||| || |||||| | |||    
T  26976495 gtttttgtaatgtttggttaatagaaggtctaaattgaaaacgattacaaacttaaaagatttttgtgtaaccaaaataacttagaggacctatctgtta 26976396  T
Q  262 caaacctcaa 271  Q
    ||||||||||    
T  26976395 caaacctcaa 26976386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 40286398 - 40286463
Alignment:
Q  153 cacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaa 218  Q
    ||||||||||||||| ||| ||||| |||||||||| | |||||||||||||||||||||||||||    
T  40286398 cacatcatcgtttttgtaatgtttggttaatagaagaactaaattgaaaatgtttacaaacttaaa 40286463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 271
Target Start/End: Complemental strand, 47573862 - 47573765
Alignment:
Q  174 tttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||| |||||||||| | |||||||||| | ||||||||||||||||| ||||| | | |||||||||||||||| | | |||| |||||||||||||    
T  47573862 tttggttaatagaaggactaaattgaaattttttacaaacttaaatgacttatgagcggccaaaataatttaaaggatcaatatgttacaaacctcaa 47573765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 271
Target Start/End: Original strand, 32186621 - 32186740
Alignment:
Q  152 ccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtac 251  Q
    |||||||||| ||||| | ||||||| |||| | ||  | ||||||||||| |||||||||||||||  |||||||||| |||||||||| |||||  |     
T  32186621 ccacatcatcatttttgttacgtttggttaacaaaaagactaaattgaaaacgtttacaaacttaaagaatttatgtgtaaccaaaataacttaaaacat 32186720  T
Q  252 ctatatattacaaacctcaa 271  Q
    | |||| |||||||||||||    
T  32186721 caatatgttacaaacctcaa 32186740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 26976497 - 26976563
Alignment:
Q  205 tttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||||||||| ||||||||||||||||||| |||||| || ||||| ||||||| |||||    
T  26976497 tttacaaacttaaatgacttatgtgtgaccaaaataacttaaaggacttatatgttacaaagctcaa 26976563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 28814025 - 28813931
Alignment:
Q  153 cacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||| |||||||||| ||||||||| |||| | ||  | ||||||||||| |||||||||||| || || ||||||||||||||||||| |||||    
T  28814025 cacaccatcgtttttgtaacgtttggttaacataaatactaaattgaaaacgtttacaaacttgaaggacttatgtgtgaccaaaataacttaaa 28813931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 162 - 271
Target Start/End: Original strand, 39714518 - 39714626
Alignment:
Q  162 gtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatatta 261  Q
    ||||||||||| ||||||||| || |  | ||||||||||| ||||||||||| |||||| |||||||| | ||||||||||||||  | | || |||||    
T  39714518 gtttttataacatttgattaacagtat-actaaattgaaaacgtttacaaactcaaatgacttatgtgtaatcaaaataatttaaatgatcaatttatta 39714616  T
Q  262 caaacctcaa 271  Q
    ||||||||||    
T  39714617 caaacctcaa 39714626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 14624213 - 14624149
Alignment:
Q  174 tttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaa 238  Q
    |||| |||||||||| | |||||||||||| |||||| |||||||||| ||||||||||||||||    
T  14624213 tttggttaatagaaggactaaattgaaaatatttacagacttaaatgacttatgtgtgaccaaaa 14624149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 241
Target Start/End: Complemental strand, 27768494 - 27768406
Alignment:
Q  153 cacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataa 241  Q
    ||||||||| ||||| ||||||||| |||| |||   | |||||| |||| ||||||||||||||| ||||||||||||| ||||||||    
T  27768494 cacatcatcatttttgtaacgtttggttaacagattgactaaatttaaaacgtttacaaacttaaaggatttatgtgtgatcaaaataa 27768406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 241
Target Start/End: Original strand, 51833356 - 51833444
Alignment:
Q  153 cacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataa 241  Q
    ||||||||| ||||| ||||||||| |||| ||||| | |||||||| ||  ||||||| ||||||||| |||||| ||||||||||||    
T  51833356 cacatcatcatttttgtaacgtttggttaacagaagaactaaattgataacatttacaatcttaaatgacttatgtatgaccaaaataa 51833444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 43650133 - 43650078
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    ||||| ||||||||||||||||||||| ||||||||||||| |||||||| |||||    
T  43650133 taaatcgaaaatgtttacaaacttaaaagatttatgtgtgatcaaaataacttaaa 43650078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 46337574 - 46337512
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||| || |||||||||||||||||||||||||| | | |||| |||||||||||||    
T  46337574 caaacttaaaggacttatgtgtgaccaaaataatttaaagaatcaatatgttacaaacctcaa 46337512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 50332588 - 50332526
Alignment:
Q  186 aagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    ||||| ||||||||||| |||||||||||||||||| |||| ||||| |||||||| ||||||    
T  50332588 aagcactaaattgaaaacgtttacaaacttaaatgacttatatgtgatcaaaataacttaaag 50332526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 36900032 - 36900117
Alignment:
Q  162 gtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||||| ||| ||||| |||| ||||  | ||||||||||||||||||||||||||| |||||||||| ||  ||||||| |||||    
T  36900032 gtttttgtaatgtttggttaacagaatgactaaattgaaaatgtttacaaacttaaaggatttatgtgagattaaaataacttaaa 36900117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 46337651 - 46337595
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    ||||| |||||| |||||||||||||| ||||||| |||||||||||||| ||||||    
T  46337651 taaatcgaaaatttttacaaacttaaaggatttatctgtgaccaaaataacttaaag 46337595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 14624235 - 14624290
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    ||||||||||| ||||||||||||||| || ||||||||||||| ||||| |||||    
T  14624235 taaattgaaaacgtttacaaacttaaaagacttatgtgtgaccagaataacttaaa 14624290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 14964978 - 14964923
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||||||||||  |||||||||||||| || ||||||||||||||||||| |||||    
T  14964978 taaattgaaaacctttacaaacttaaaggacttatgtgtgaccaaaataacttaaa 14964923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 25848424 - 25848357
Alignment:
Q  204 gtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||||||| ||||| |||||||||||||||| |||| | ||  || |||||||||||||||    
T  25848424 gtttacaaacttaaaagatttttgtgtgaccaaaataacttaacggactaatctattacaaacctcaa 25848357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 40286387 - 40286308
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||| |||||| |||||||||||||| || || |||||||||||||||| |||||| | | |||| ||| |||||||||    
T  40286387 taaatcgaaaatatttacaaacttaaaggacttctgtgtgaccaaaataacttaaaggaacaatatgttataaacctcaa 40286308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 43650141 - 43650240
Alignment:
Q  150 tgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaa-cttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    |||||||||||||||||| ||| ||||  |||| ||||| | ||| |||||||  |||||||| |||||| || |||||||| |||||||||| ||||||    
T  43650141 tgccacatcatcgtttttgtaatgttttgttaacagaaggactaagttgaaaagatttacaaatcttaaaggacttatgtgttaccaaaataacttaaag 43650240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 47573884 - 47573962
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||| |||||| |||||||| || |||| |||||||||||||| |||||| | | || |||||||||||||||    
T  47573884 taaattgaaaacgtttacgaacttaaa-gacttatatgtgaccaaaataacttaaaggatcaatctattacaaacctcaa 47573962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 32186534 - 32186472
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||| || ||| ||||||||||||||  |||||| ||| ||||||||||||||||||    
T  32186534 caaacttaaaagacttaggtgtgaccaaaatagcttaaaggaccaatatattacaaacctcaa 32186472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 49364405 - 49364450
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaa 237  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||||    
T  49364405 taaattgaaaacgtttacaaacttaaatgacatatgtgtgaccaaa 49364450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 36667280 - 36667324
Alignment:
Q  204 gtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    ||||||||||||||| || ||||||||||||||||||| ||||||    
T  36667280 gtttacaaacttaaaagacttatgtgtgaccaaaataacttaaag 36667324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 271
Target Start/End: Complemental strand, 47069686 - 47069598
Alignment:
Q  183 tagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||| | ||||||||||| |||||| |||| ||| || ||||||||||||||||||| | |||| ||| || | ||||||| |||||    
T  47069686 tagaagaactaaattgaaaacgtttacgaactcaaaggacttatgtgtgaccaaaataactaaaagaaccaatttgttacaaaactcaa 47069598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 3169785 - 3169726
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacct 268  Q
    |||||||||| ||||||| |||||| ||||||| |||||| ||| || ||||||||||||    
T  3169785 caaacttaaaagatttatatgtgactaaaataacttaaagaaccaatctattacaaacct 3169726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 18020010 - 18020065
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    ||||||||||| |||| |||||||||| || |||||||| |||||||||| |||||    
T  18020010 taaattgaaaaggtttgcaaacttaaaagacttatgtgtaaccaaaataacttaaa 18020065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 27658058 - 27658015
Alignment:
Q  204 gtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    ||||||||||||||||||||||||||||||  |||||| |||||    
T  27658058 gtttacaaacttaaatgatttatgtgtgactgaaataacttaaa 27658015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 27768506 - 27768581
Alignment:
Q  193 aaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacct 268  Q
    |||| |||||||||||||||||||||||| || ||| ||| |||||||| |||||  | | || ||||||||||||    
T  27768506 aaatcgaaaatgtttacaaacttaaatgacttttgtatgatcaaaataacttaaaagagcaatttattacaaacct 27768581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 252194 - 252140
Alignment:
Q  193 aaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||| ||||| ||||||||||||||| || |||| |||||||||||||| |||||    
T  252194 aaatcgaaaacgtttacaaacttaaaggacttatttgtgaccaaaataacttaaa 252140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 270
Target Start/End: Original strand, 13902992 - 13903070
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctca 270  Q
    ||||||||||| ||||||||| ||||| || |||| ||| |||||||||| |||||  ||  |||| ||||||||||||    
T  13902992 taaattgaaaacgtttacaaatttaaaggacttatatgtaaccaaaataacttaaaagactaatatgttacaaacctca 13903070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 43650056 - 43649994
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||| |||||||||||||| ||||||| |||||  ||| || ||||||||| |||||    
T  43650056 caaacttaaaggatttatgtgtgacgaaaataacttaaaagaccaatttattacaaatctcaa 43649994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 45131613 - 45131663
Alignment:
Q  183 tagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgac 233  Q
    |||||| | ||||||||||||||||||||||||||| || | |||||||||    
T  45131613 tagaaggactaaattgaaaatgtttacaaacttaaaggactaatgtgtgac 45131663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 47069600 - 47069538
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||  | |||||||||| |||||||| |||||| ||| |||| |||||||||||||    
T  47069600 caaacttaaagaacttatgtgtgatcaaaataacttaaaggaccaatatgttacaaacctcaa 47069538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 47573767 - 47573705
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||| || ||||||||||  |||||||||||||| ||  |||| |||||||||||||    
T  47573767 caaacttaaaagacttatgtgtgataaaaataatttaaaggactaatatgttacaaacctcaa 47573705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 47891181 - 47891143
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  47891181 caaacttaaatgacttaggtgtgaccaaaataatttaaa 47891143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 3169617 - 3169544
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaa 265  Q
    |||||||||||  |||||||||||||| ||  | ||| |||||||||||| |||||| ||| |||| |||||||    
T  3169617 taaattgaaaacatttacaaacttaaaagacctgtgtatgaccaaaataacttaaaggaccaatatgttacaaa 3169544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 271
Target Start/End: Original strand, 42866061 - 42866158
Alignment:
Q  174 tttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||| |||||| ||| | |||||| ||||  ||||||||||| || || |||||||||||||||||   |||||  ||| ||||||||||||| ||||    
T  42866061 tttggttaataaaagtactaaattaaaaacttttacaaacttgaaggacttatgtgtgaccaaaatttcttaaatgaccaatatattacaaacttcaa 42866158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 248
Target Start/End: Complemental strand, 5442644 - 5442548
Alignment:
Q  153 cacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaa-cttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    ||||||||||||||| ||| ||| | |||| | ||| | |||||||||||  ||||||||  ||||| || |||| |||||||||||||| ||||||    
T  5442644 cacatcatcgtttttgtaatgttgggttaacataagaactaaattgaaaacatttacaaattttaaaagacttatctgtgaccaaaataacttaaag 5442548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 36374952 - 36374896
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    ||||| |||||  |||||||| ||||| ||||||| |||||||||||| ||||||||    
T  36374952 taaatcgaaaacttttacaaatttaaaggatttatttgtgaccaaaattatttaaag 36374896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 40209863 - 40209911
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaata 240  Q
    |||||||||||  ||| |||||||||| || ||||||||||||||||||    
T  40209863 taaattgaaaacttttgcaaacttaaacgacttatgtgtgaccaaaata 40209911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 22026565 - 22026691
Alignment:
Q  20 gccctctcattgtcatcctttatgaacctcaaatcgaagccattatacacagaataattgataacaacttcccttaatttttcctttgatgagaatttac 119  Q
    ||||||| ||||| || |||||| |||||||||||||| | |||||||||| |||||||||||||||||||  | || | ||  ||||||||||||||||    
T  22026565 gccctctaattgtgattctttatcaacctcaaatcgaaacaattatacacaaaataattgataacaacttcattgaactctttttttgatgagaatttac 22026664  T
Q  120 atcctaatgtccatcgtttacaaactt 146  Q
    ||| || ||||| || |||||||||||    
T  22026665 atcttactgtccttcatttacaaactt 22026691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 40951832 - 40951911
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||  | | || |||||||||||||||    
T  40951832 taaatagaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataacttaaatgatcaatctattacaaacctcaa 40951911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 6694718 - 6694797
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||| ||||| ||||| ||||||||| || ||||||||||||||||||| |||||| ||| |||| |||||||||||||    
T  6694718 taaatcgaaaacgtttataaacttaaaggacttatgtgtgaccaaaataacttaaaggaccaatatgttacaaacctcaa 6694797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 22750465 - 22750386
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||| ||| ||||||||||| ||||||||| |||| |||||||||||||  | | ||||||||||||||||||    
T  22750465 taaattgaaaacgttcacaaacttaaaagatttatgtatgacaaaaataatttaaatgatcaatatattacaaacctcaa 22750386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 270
Target Start/End: Complemental strand, 4048391 - 4048273
Alignment:
Q  152 ccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtac 251  Q
    |||||||||| ||||| ||| ||||| |||| | ||  | ||||||||||| |||||||||||| || ||||||| ||||||||  |||| |||||| ||    
T  4048391 ccacatcatcatttttgtaatgtttggttaacaaaatgactaaattgaaaacgtttacaaacttcaaggatttatatgtgaccattataacttaaaggac 4048292  T
Q  252 ctatatattacaaacctca 270  Q
    | |||| ||||||||||||    
T  4048291 caatatgttacaaacctca 4048273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 3198402 - 3198281
Alignment:
Q  150 tgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagt 249  Q
    ||||| |||||||||||| ||| ||||| |||| || |  | |||||||||||||||||||||||| ||  | ||||||| ||||||||||| |||||      
T  3198402 tgccagatcatcgtttttgtaatgtttggttaacaggatgattaaattgaaaatgtttacaaactttaagaacttatgtgggaccaaaataacttaaaag 3198303  T
Q  250 acctatatattacaaacctcaa 271  Q
    ||| || | |||||||||||||    
T  3198302 accaatttgttacaaacctcaa 3198281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 29019415 - 29019342
Alignment:
Q  174 tttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    ||||||||| ||||  | ||||||||||| ||||||||||||||| || ||||||||||||||||||| |||||    
T  29019415 tttgattaacagaatgactaaattgaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataacttaaa 29019342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 11975596 - 11975517
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||| ||||| ||||||||| || ||||||||||||| ||||| |||||| | | |||| |||||||||||||    
T  11975596 taaattgaaaacgtttaaaaacttaaaggacttatgtgtgaccacaataacttaaaggatcaatatgttacaaacctcaa 11975517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 42312831 - 42312769
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||| || ||||||||||||||||||| |||||  ||| ||||||||||||||||||    
T  42312831 caaacttaaaggacttatgtgtgaccaaaataacttaaatgaccaatatattacaaacctcaa 42312769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 271
Target Start/End: Original strand, 11975615 - 11975708
Alignment:
Q  179 ttaatagaagcagtaaattgaaaatgtttacaaactt-aaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||| | |||||||||||| ||||||||||| ||| || ||||||||||| ||||||| |||||| ||| ||   |||||||||||||    
T  11975615 ttaatagaaggactaaattgaaaatatttacaaacttaaaaggacttatgtgtgacaaaaataacttaaaggaccaatcagttacaaacctcaa 11975708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 23164038 - 23164127
Alignment:
Q  143 acttaattgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtga 232  Q
    |||||| || ||||||||||||||| |||| ||||||||| |  |  | |||||||||||||| ||||||||||||| | ||||||||||    
T  23164038 acttaactgtcacatcatcgtttttgtaacatttgattaacaacataaataaattgaaaatgtatacaaacttaaataacttatgtgtga 23164127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 246
Target Start/End: Complemental strand, 27280805 - 27280709
Alignment:
Q  150 tgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaa 246  Q
    |||||||||||||||||| ||| ||||| ||||  |||  | ||||| ||||| ||||||||||||||| || ||| |||| |||||||||| ||||    
T  27280805 tgccacatcatcgtttttgtaatgtttggttaactgaatgactaaatcgaaaacgtttacaaacttaaaggacttacgtgttaccaaaataacttaa 27280709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 29710508 - 29710564
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    |||||||||||  ||||||||||||||||| ||||||||||| ||||||| ||||||    
T  29710508 taaattgaaaagttttacaaacttaaatgacttatgtgtgacgaaaataacttaaag 29710564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 44293921 - 44293865
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    ||||| |||||||||||||||||||||  |||||| |||||||||||||| ||||||    
T  44293921 taaatagaaaatgtttacaaacttaaagtatttatttgtgaccaaaataacttaaag 44293865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 4048401 - 4048456
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    ||||| ||||||||||||||||||||| || |||||||| |||||||||| |||||    
T  4048401 taaatcgaaaatgtttacaaacttaaaggacttatgtgtaaccaaaataacttaaa 4048456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 30869588 - 30869667
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||||||||||||||||||| || ||| | ||||  ||||||| |||||| ||| || | |||||||||||||    
T  30869588 taaattgaaaatgtttacaaacttaaaggacttacgcgtgataaaaataacttaaaggaccaatctgttacaaacctcaa 30869667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 268
Target Start/End: Complemental strand, 26978403 - 26978297
Alignment:
Q  162 gtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatatta 261  Q
    |||||| ||||||||| ||||  ||||   ||||||||||| || |||||||||||| || || ||||| ||||||||| |||||   |||||| |||||    
T  26978403 gtttttgtaacgtttggttaaccgaaggtttaaattgaaaacgtctacaaacttaaaggacttgtgtgttaccaaaatattttaacagacctatttatta 26978304  T
Q  262 caaacct 268  Q
    |||||||    
T  26978303 caaacct 26978297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 27576596 - 27576658
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||||| ||||||||||||||||||| |||||| ||| || | |||||||| ||||    
T  27576596 caaacttaaatgacttatgtgtgaccaaaataacttaaaggaccaatctgttacaaacgtcaa 27576658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 44294037 - 44294099
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||| |||| || |||||||||||||||||||||||||| ||  |||| |||||||||||||    
T  44294037 caaacgtaaaagacttatgtgtgaccaaaataatttaaaggactaatatgttacaaacctcaa 44294099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 43258405 - 43258498
Alignment:
Q  154 acatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||||||||||||| |||  |||  |||| ||||  | |||||| |||| ||||| ||||||||| || |||||||||| ||||||||||||||    
T  43258405 acatcatcgtttttgtaatattttgttaacagaatgactaaattaaaaacgtttaaaaacttaaaggacttatgtgtgatcaaaataatttaaa 43258498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 44293966 - 44294039
Alignment:
Q  198 gaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||||||||||||||  | |||| |||||||||||||| |||||| | | || | |||||||||||||    
T  44293966 gaaaatgtttacaaacttaaagtacttatttgtgaccaaaataacttaaaggatcaatctgttacaaacctcaa 44294039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 27576520 - 27576568
Alignment:
Q  193 aaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataa 241  Q
    ||||||||||  |||||||||||||| || |||||||||||||||||||    
T  27576520 aaattgaaaacttttacaaacttaaaggacttatgtgtgaccaaaataa 27576568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 6068801 - 6068722
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||  ||||| ||||||| |  |||||||| |||  |||||||||||||| || ||| |||||||||||||||    
T  6068801 taaattgaaatcgtttataaacttatagaatttatgtatgattaaaataatttaaaggacatatttattacaaacctcaa 6068722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 40951767 - 40951724
Alignment:
Q  204 gtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||||||||||||||||| ||||||| ||||||||||| |||||    
T  40951767 gtttacaaacttaaatgacttatgtgcgaccaaaataacttaaa 40951724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 43258393 - 43258338
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    ||||| |||||||||||||||||||||  | ||||||||||| ||||||| |||||    
T  43258393 taaatcgaaaatgtttacaaacttaaaacacttatgtgtgacaaaaataacttaaa 43258338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 22026477 - 22026410
Alignment:
Q  150 tgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaa 218  Q
    |||||||||||||||||  ||||||||| |||| | ||| | |||||| |||| |||||||||||||||    
T  22026477 tgccacatcatcgttttg-taacgtttggttaacataaggactaaattaaaaacgtttacaaacttaaa 22026410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 27855714 - 27855799
Alignment:
Q  150 tgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaa 236  Q
    |||||||||||||||||| ||| || ||||||||||||| | ||||||||||| ||||||||||| ||||||  |||||||||||||    
T  27855714 tgccacatcatcgttttt-taatgtctgattaatagaagaattaaattgaaaacgtttacaaactcaaatgacatatgtgtgaccaa 27855799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 271
Target Start/End: Complemental strand, 9090086 - 9089978
Alignment:
Q  163 tttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattac 262  Q
    ||||| ||| ||| |||||||||||| | |||||||||   ||||| |||||||||  ||||||||||| | |||||||||||||| |||||  ||| ||    
T  9090086 tttttgtaatgttggattaatagaagtattaaattgaatccgtttataaacttaaagaatttatgtgtggcaaaaataatttaaaggacctacctatcac 9089987  T
Q  263 aaacctcaa 271  Q
    |||||||||    
T  9089986 aaacctcaa 9089978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 14550204 - 14550278
Alignment:
Q  199 aaaatgtttacaaacttaaatgatttatgtgtgacc--aaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||||||||||||||| ||||||||||||  |||||||||||||| ||  ||  ||||||||||||||    
T  14550204 aaaatgtttacaaacttaaatgacttatgtgtgaccaaaaaataatttaaagaactaatccattacaaacctcaa 14550278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 9399972 - 9400094
Alignment:
Q  150 tgccacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaactt-aaatgatttatgtgtgaccaaaataatttaaag 248  Q
    |||||||| ||| ||||| ||| ||||| ||||  |||  | ||||||||||| |||||||||||| ||| || ||||||||||||||||||| ||||||    
T  9399972 tgccacatgatcatttttgtaatgtttggttaacggaatgactaaattgaaaaggtttacaaacttaaaaggacttatgtgtgaccaaaataacttaaag 9400071  T
Q  249 tacctatatattacaaacctcaa 271  Q
     ||| | ||  ||||||||||||    
T  9400072 gaccaacatgctacaaacctcaa 9400094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 271
Target Start/End: Original strand, 36052996 - 36053114
Alignment:
Q  153 cacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacc 252  Q
    ||||||||| ||||| ||| ||||| |||| ||||  | || ||||||||  ||||||||||||||  | ||||||||||| ||||||| |||||| | |    
T  36052996 cacatcatcatttttgtaatgtttggttaacagaatgactagattgaaaacttttacaaacttaaagaacttatgtgtgactaaaataacttaaaggatc 36053095  T
Q  253 tatatattacaaacctcaa 271  Q
     |||| |||||||||||||    
T  36053096 aatattttacaaacctcaa 36053114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 14550186 - 14550101
Alignment:
Q  153 cacatcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaa 238  Q
    ||||||||| |||||  || ||||| |||| ||||| | ||||||||||| ||||||||||||||| || |||||||| |||||||    
T  14550186 cacatcatcatttttgcaatgtttggttaacagaaggaataaattgaaaacgtttacaaacttaaaggacttatgtgtaaccaaaa 14550101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 271
Target Start/End: Original strand, 24909574 - 24909671
Alignment:
Q  174 tttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||| |||| ||||| | |||||||||  | |||||||||||||| || ||||| |||||||||||||||||||| ||| || |  ||||||||||||    
T  24909574 tttggttaacagaaggactaaattgaatttttttacaaacttaaaggacttatgcgtgaccaaaataatttaaaggaccaatctgctacaaacctcaa 24909671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 265
Target Start/End: Original strand, 28618825 - 28618898
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaa 265  Q
    ||||||||||| |||||||||||||||  |||||| |||||||||||||| |||||| |||  | |||||||||    
T  28618825 taaattgaaaacgtttacaaacttaaaaaatttatttgtgaccaaaataacttaaaggaccattttattacaaa 28618898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 14895020 - 14895072
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataattt 244  Q
    ||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||    
T  14895020 taaattgaaaacgtttacaaatttaaaagatttatgtgtggccaaaataattt 14895072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 20209409 - 20209353
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    ||||| |||||||||||||||||||||  |||||| |||||||||||||| ||||||    
T  20209409 taaatagaaaatgtttacaaacttaaagtatttatttgtgaccaaaataacttaaag 20209353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 20229117 - 20229061
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    ||||| |||||||||||||||||||||  |||||| |||||||||||||| ||||||    
T  20229117 taaatagaaaatgtttacaaacttaaagtatttatttgtgaccaaaataacttaaag 20229061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 27128023 - 27127967
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    |||||||||||  |||||||||||||| || ||||||||||||||||||| ||||||    
T  27128023 taaattgaaaacatttacaaacttaaaggacttatgtgtgaccaaaataacttaaag 27127967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 6220372 - 6220450
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||| ||||| ||||||||| || ||||||||||||| ||||| |||||||||| || | ||||||| |||||    
T  6220372 taaattgaaaacgttta-aaacttaaaggacttatgtgtgaccacaataacttaaagtaccaatctgttacaaatctcaa 6220450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 24793110 - 24793035
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacc 267  Q
    |||||||||||| |||||||| |||||  | |||||||| ||||||||||||||||| | |||| ||||| |||||    
T  24793110 taaattgaaaatttttacaaatttaaagtacttatgtgtaaccaaaataatttaaaggatctatctattataaacc 24793035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 20209525 - 20209587
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||| |||| || |||||||||||||||||||||||||| ||  |||| |||||||||||||    
T  20209525 caaacgtaaaagacttatgtgtgaccaaaataatttaaaggactaatatgttacaaacctcaa 20209587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 20229233 - 20229295
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||| |||| || |||||||||||||||||||||||||| ||  |||| |||||||||||||    
T  20229233 caaacgtaaaagacttatgtgtgaccaaaataatttaaaggactaatatgttacaaacctcaa 20229295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 41151572 - 41151498
Alignment:
Q  174 tttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    |||| |||| ||||| | |||||||||||  ||||||||| |||| || ||||||||||||||||||| ||||||    
T  41151572 tttggttaacagaaggactaaattgaaaacatttacaaacataaaggacttatgtgtgaccaaaataacttaaag 41151498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 20209454 - 20209527
Alignment:
Q  198 gaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||||||||||||||  | |||| |||||||||||||| |||||| | | || | |||||||||||||    
T  20209454 gaaaatgtttacaaacttaaagtacttatttgtgaccaaaataacttaaaggatcaatctgttacaaacctcaa 20209527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 20229162 - 20229235
Alignment:
Q  198 gaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||||||||||||||  | |||| |||||||||||||| |||||| | | || | |||||||||||||    
T  20229162 gaaaatgtttacaaacttaaagtacttatttgtgaccaaaataacttaaaggatcaatctgttacaaacctcaa 20229235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 27855627 - 27855570
Alignment:
Q  211 aacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacct 268  Q
    |||||||||||||||||||||  |||||||| |||||| ||| || ||||||||||||    
T  27855627 aacttaaatgatttatgtgtgttcaaaataacttaaaggaccaatctattacaaacct 27855570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 9399964 - 9399909
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    |||||||||||||||||||| |||||| |  ||||||||||||||||||| ||||||    
T  9399964 taaattgaaaatgtttacaatcttaaaag-cttatgtgtgaccaaaataacttaaag 9399909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 14550016 - 14549968
Alignment:
Q  223 ttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||||||||||||  ||||| ||| ||||||||||||||||||    
T  14550016 ttatgtgtgaccaaaataacataaagaaccaatatattacaaacctcaa 14549968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 41151606 - 41151669
Alignment:
Q  204 gtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacc 267  Q
    ||||||||||||||| || |||||||||||||||| || |||||| ||| || | |||||||||    
T  41151606 gtttacaaacttaaaggacttatgtgtgaccaaaagaacttaaaggaccaatctgttacaaacc 41151669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 9399887 - 9399826
Alignment:
Q  210 aaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||| || ||| ||||||||||| ||| |||||| ||| |||| |||||||||||||    
T  9399887 aaacttaaaggacttacgtgtgaccaaagtaacttaaagaaccaatatgttacaaacctcaa 9399826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 268
Target Start/End: Original strand, 21708 - 21784
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacct 268  Q
    |||||||||| | |||||||||||||| |||||||||||||||||||||| |||||  | | ||||||| |||||||    
T  21708 taaattgaaattttttacaaacttaaaggatttatgtgtgaccaaaataacttaaaagatcaatatattgcaaacct 21784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 21681 - 21613
Alignment:
Q  180 taatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaag 248  Q
    ||||||||| | ||||| ||||| ||||||||| ||||| || |||||||||||| |||||||||||||    
T  21681 taatagaaggactaaatcgaaaacgtttacaaatttaaaagacttatgtgtgaccgaaataatttaaag 21613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 2566 - 2475
Alignment:
Q  156 atcatcgtttttataacgtttgattaatagaagcagtaaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaaa 247  Q
    |||||||||||| ||| ||||| |||||||||| | || || | ||| |||||||||||||||  | ||||||||||| ||||||| |||||    
T  2566 atcatcgtttttgtaatgtttggttaatagaaggactagataggaaacgtttacaaacttaaagaacttatgtgtgactaaaataaattaaa 2475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 1200 - 1262
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    ||||||||||||| ||||||||||||||||||| |||||| ||| || | |||||||| ||||    
T  1200 caaacttaaatgacttatgtgtgaccaaaataacttaaaggaccaatctgttacaaacgtcaa 1262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 1124 - 1172
Alignment:
Q  193 aaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataa 241  Q
    ||||||||||  |||||||||||||| || |||||||||||||||||||    
T  1124 aaattgaaaacttttacaaacttaaaggacttatgtgtgaccaaaataa 1172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 161476 - 161414
Alignment:
Q  209 caaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||| || ||||||||||||||||||| |||||| ||| || | |||||||||||||    
T  161476 caaacttaaaggacttatgtgtgaccaaaataagttaaaggaccaatctgttacaaacctcaa 161414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 161593 - 161642
Alignment:
Q  192 taaattgaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataa 241  Q
    |||||||||||  |||||||||||||| || |||||||||||||||||||    
T  161593 taaattgaaaacttttacaaacttaaaggacttatgtgtgaccaaaataa 161642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 161538 - 161474
Alignment:
Q  207 tacaaacttaaatgatttatgtgtgaccaaaataatttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||||| || ||||||||||| ||||||| |||||| ||| || | ||||||| |||||    
T  161538 tacaaacttaaaggacttatgtgtgacaaaaataagttaaaggaccaatctgttacaaatctcaa 161474  T

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Target: scaffold0578 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 2445 - 2509
Alignment:
Q  208 acaaacttaaatgatttatgtgtgaccaaaataa-tttaaagtacctatatattacaaacctcaa 271  Q
    |||||||||||||| |||||||||| |||||||| || |||| ||| || |||||||||||||||    
T  2445 acaaacttaaatgacttatgtgtgaacaaaataacttaaaaggaccaatctattacaaacctcaa 2509  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 12191 - 12143
Alignment:
Q  198 gaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataatttaa 246  Q
    ||||||||||||||||||||| || || |||||||| ||||||| ||||    
T  12191 gaaaatgtttacaaacttaaaggacttgtgtgtgacaaaaataacttaa 12143  T

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