View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1721-Insertion-3 (Length: 387)
Name: NF1721-Insertion-3
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721-Insertion-3 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 5 - 387
Target Start/End: Original strand, 4956381 - 4956763
Alignment:
| Q |
5 |
acaatattcatccttagaatcagaaagacaaaagacacttgattcatcattattgataacatcggttaaaataggcttccccaatccaaagtcagtttca |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4956381 |
acaatattcatccttagaatcagaaagacaaaaggcacttgattcatcattattgataacatcggttaaaataggcttccccaatccaaagtcagtttca |
4956480 |
T |
|
| Q |
105 |
tacacatcaaactttggtgaccctattacacgaatcatattcaaagacttgttaaactctttatcttcttttaaaggatctttcaaacttatttctcttc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4956481 |
tacacatcaaactttggtgaccctattacacgaatcatattcaaagacttgttaaactctttatcttcttttaaaggatctttcaaacttatttctcttc |
4956580 |
T |
|
| Q |
205 |
caataatatttgctgcttcacatataccattttctcccactaacttcctctttggtagtgttgcaagacaaaatgataaacaatttccaaaatatgtgga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4956581 |
caataatatttgctgcttcacatataccattttctcccactaacttcctctttggtagtgttgcaagacaaaatgataaacaatttccaaaatatgtgga |
4956680 |
T |
|
| Q |
305 |
agggattgaaagttcaaaacgattacgcaaatccattagaaatccaaaaccatgaatatcctcaaaatcatcgtctgatggag |
387 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
4956681 |
aggaattgaaagttcaaaacgattacgcaaatccattagaaatccaaaaccatgaatatcctcataatcatcgtctgttggag |
4956763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University