View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1721-Insertion-4 (Length: 497)
Name: NF1721-Insertion-4
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 8e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 33095331 - 33095118
Alignment:
| Q |
8 |
taattctacgtaaaaaattcgaaatgacatttaatgatacactatctttattaaagtgatatttattatgaaacttagggagtgttaatttgttcatttt |
107 |
Q |
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| T |
33095331 |
taattctacatcaaaaattcgaaatgacatttcatgatacactatctttattaaagtgatatttaatatgaaactgagggagtgttaattttttcatttt |
33095232 |
T |
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| Q |
108 |
agggttgtatattttcaatatttcggttggcttttggctaaaaatttggtgatgaactttctttcaaaatcactgcaggatttggt-aaattgtggtgcg |
206 |
Q |
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| T |
33095231 |
agggttgtatattttcaatatttcggttggcttttggctaaaaatttggtgatgaactttctttcaaaatcactgcacgatttggtgaaattgtggtgcg |
33095132 |
T |
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| Q |
207 |
atttctgctacaag |
220 |
Q |
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|||||||||||||| |
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| T |
33095131 |
atttctgctacaag |
33095118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 375 - 493
Target Start/End: Complemental strand, 33095116 - 33094998
Alignment:
| Q |
375 |
ttaggagttgaggctctttggatgagattattgagttgaaaaacaattgtagactccttagatgagtgaaaatcatcaagtatcttattcaagggtcaga |
474 |
Q |
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| T |
33095116 |
ttaggagttgaggctctttggatgagattattgagttgaaaaacaattgtagactccttagatgagtgaaaatcatcaagtatcttattcaagggtcaga |
33095017 |
T |
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| Q |
475 |
aaattggtagaaataatta |
493 |
Q |
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| T |
33095016 |
aaattggtagaaataatta |
33094998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 460
Target Start/End: Original strand, 52065427 - 52065591
Alignment:
| Q |
297 |
acactatataagcattttttataattttgttgattaatcttgtcaaaccaaa-gatagatattttagagaacttagagcttaggagttgaggctctttgg |
395 |
Q |
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| T |
52065427 |
acactgtataagcattctttatcattttgttgtggaatctcatgaaaccaaatgagggaatttttagggaacttagaggttaaaagttgagggtcttttg |
52065526 |
T |
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| Q |
396 |
atgagattattgagttgaaaaacaattgtagactccttagatgagtgaaaatcatcaagtatctt |
460 |
Q |
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| T |
52065527 |
atgagattcttgggttgggaaacaattgtgaaccccttgggtgagtgaaaatcatcgagtctctt |
52065591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 450
Target Start/End: Original strand, 3677353 - 3677446
Alignment:
| Q |
357 |
ttttagagaacttagagcttaggagttgaggctctttggatgagattattgagttgaaaaacaattgtagactccttagatgagtgaaaatcat |
450 |
Q |
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| T |
3677353 |
ttttagaaaacttagaggctaaaagttgagggtctttggatgagatttctgagttgggaaacaattataaacaccttgtatgagagaaaatcat |
3677446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 460
Target Start/End: Complemental strand, 32576540 - 32576472
Alignment:
| Q |
392 |
ttggatgagattattgagttgaaaaacaattgtagactccttagatgagtgaaaatcatcaagtatctt |
460 |
Q |
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|||| ||||||| ||| |||| ||||||||||| || ||| ||||||||||||||||| |||| |||| |
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| T |
32576540 |
ttgggtgagattcttgggttgggaaacaattgtaaacacctaagatgagtgaaaatcattaagtctctt |
32576472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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