View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1721-Insertion-5 (Length: 911)

Name: NF1721-Insertion-5
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1721-Insertion-5
NF1721-Insertion-5
[»] chr7 (21 HSPs)
chr7 (8-422)||(20373588-20374002)
chr7 (487-733)||(20373275-20373523)
chr7 (771-911)||(20373005-20373145)
chr7 (178-420)||(20423459-20423698)
chr7 (37-420)||(20442356-20442763)
chr7 (8-136)||(13397864-13397992)
chr7 (322-420)||(13398044-13398144)
chr7 (187-277)||(20339679-20339771)
chr7 (280-420)||(20407959-20408097)
chr7 (553-647)||(13400952-13401046)
chr7 (776-901)||(20410072-20410197)
chr7 (37-135)||(20407732-20407830)
chr7 (779-901)||(20445187-20445309)
chr7 (178-263)||(20132831-20132916)
chr7 (178-285)||(20140036-20140146)
chr7 (495-647)||(20408170-20408313)
chr7 (776-834)||(20426772-20426830)
chr7 (794-859)||(20408613-20408678)
chr7 (50-113)||(20339550-20339612)
chr7 (620-649)||(20139733-20139762)
chr7 (805-862)||(20443227-20443284)
[»] chr1 (2 HSPs)
chr1 (607-700)||(15963246-15963340)
chr1 (237-289)||(15963142-15963194)


Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 8 - 422
Target Start/End: Complemental strand, 20374002 - 20373588
Alignment:
8 gatagtattcacgagtgatcttattaccgcatttagagatttgttatttatcaagaattgaagtttaaagatatttctgcaaattaatatatgttgaata 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
20374002 gatagtattcacgagtgatcttattaccgcatttagagatttgttatttatcaagaattgaagtttaaagatatttctgcaaattaatatatgttgaata 20373903  T
108 ttcttgttctgcttgtttttagacctagtgcatccaagcaagaattattactcattatttatatgttgattagaatctaatcttcaataacatagccctc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
20373902 ttcttgttctgcttgtttttagacctagtgcatccaagcaagaattattactcattatttatatgttgattagaatctaatctttaataacatagccctc 20373803  T
208 atgttacctgtggtgtagggttgtattcatggcagcacggttgaaagttgttgcagcacagtttaacgtttatcagctcctctttcgtgtatggtgtgag 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
20373802 atgttacctgtggtgtagggttgtattcatggcagcacggttgaaaattgttgcagcacagtttaacgtttatcagctcctctttcgtgtatggtgtgag 20373703  T
308 cttccagtggctgcagtttgcattggtgtttagtagtttgtttgtgttttttctctggtgcagtttaaggttcagtgctaaatctttcatctcagcaagc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
20373702 cttccagtggctgcagtttgcattggtgtttagtagtttgtttgtgttttttctctggtgcagtttaaggttcagtgctaaatctttcatctcagcaagc 20373603  T
408 ctagattaatgaata 422  Q
    |||||||||||||||    
20373602 ctagattaatgaata 20373588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 487 - 733
Target Start/End: Complemental strand, 20373523 - 20373275
Alignment:
487 ctgttatctgctagtgccagagttgttgtatctttccgaactttttcggctatttcttgtttgtatttcgagtgagcttttctaataaattcattttctg 586  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
20373523 ctgttatctgctagtgccagagttgctgtatctttccgaactttttcggctatttcttgtttgtatttcgagtgagcttttctaataaattcattttctg 20373424  T
587 tttaaaannnnnnnnnnnn--ccctagatagaatgttatttggtttcaatttagttttcttaatcttcttcttgattcatctcggattctgctatatatg 684  Q
    |||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
20373423 tttaaaaaaatatatatatatccctagatagaatgttatttggtttcaatttagttttcttaatcttcttcttgattcatctcggattctgctatatatg 20373324  T
685 gagacaaaataacttaaatatggccgaaatatactgtttgatcagattc 733  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
20373323 gagacaaaataacttaaatatggcctaaatatactgtttgatcagattc 20373275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 771 - 911
Target Start/End: Complemental strand, 20373145 - 20373005
Alignment:
771 tttaattgctatgtatagcgctctttgattgtttcagtcttagacatttaatctctagatctgtgagaactgagaaggtaactcatcaaagccgcttata 870  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
20373145 tttaattgctacgtatagcgcactttgattgtttcagtcttagacaattaatctctagatctgtgagaactgagaaggcaactcatcaaagccacttata 20373046  T
871 atgactctgagtaagagaaaacaaaatcagtttgccacata 911  Q
    || ||||||||||||||||||||||||||||||||||||||    
20373045 ataactctgagtaagagaaaacaaaatcagtttgccacata 20373005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 178 - 420
Target Start/End: Original strand, 20423459 - 20423698
Alignment:
178 tagaatctaatcttcaataacatagccctcatgttacctgtggtgtagggttgtattcatggcagcacggttgaaagttgttgcagcacagtttaacgtt 277  Q
    |||||||||||||| ||||||| ||||||||| ||||||||| |||||| ||||||||||| ||||||| |||||||||||||||| |||  | || | |    
20423459 tagaatctaatctttaataacacagccctcattttacctgtgatgtaggtttgtattcatgtcagcacgattgaaagttgttgcagaacaaatcaatg-t 20423557  T
278 tatcagctcctctttcgtgtatggtgtgagcttccagtggctgcagtttgcattggtgtttagtagtttgtttgtgtttt-ttctctggtgcagtttaag 376  Q
    | ||||||| || |||||||||||||||| |||| ||||| ||| ||  || |||||| || |||||   |||||||||| ||||||||||||| || ||    
20423558 tgtcagctcgtcgttcgtgtatggtgtgaccttctagtggatgcggtgggctttggtgcttggtagt---tttgtgttttattctctggtgcagatttag 20423654  T
377 gttcagtgctaaatctttcatctcagcaagcctagattaatgaa 420  Q
    ||||||| |||||||| |||||||| ||| |||||||| |||||    
20423655 gttcagttctaaatctctcatctcaacaaacctagattgatgaa 20423698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 37 - 420
Target Start/End: Original strand, 20442356 - 20442763
Alignment:
37 catttagagatttgttatttatcaagaattgaagtttaaagatatttctgcaaattaatatatgttgaatattcttgttctgcttgtttttagacctagt 136  Q
    ||||||||| || ||| |||||||||||||||||| |||||||| || || |||||||||||| |||||||||||||||  | |||  |||||| |||||    
20442356 catttagagcttggttctttatcaagaattgaagtataaagatagttttgaaaattaatatatattgaatattcttgttgcgattgggtttagatctagt 20442455  T
137 gcatcca-------------agcaagaattattactcattatttatatgt---------------tgat-tagaatctaatcttcaataacatagccctc 207  Q
    |||||||             |||||||||||||||||||||||||| |||               || | |||||||||||||| ||||||| ||||| |    
20442456 gcatccatgttgattagggaagcaagaattattactcattatttatgtgtactggttaatggtattgctatagaatctaatctttaataacacagcccac 20442555  T
208 atgttacctgtggtgtagggttgtattcatggcagcacggttgaaagttgttgcagcacagtttaacgtttatcagctcctctttcgtgtatggtgtgag 307  Q
    || |||||| || |||||| |||||||||||  ||||||||| ||||||||| ||| |||  | || |||  ||||||| || |||||  |||||||||     
20442556 attttacctatgatgtaggtttgtattcatgatagcacggttaaaagttgttccagaacacatcaatgttg-tcagctcgtcgttcgt--atggtgtgac 20442652  T
308 cttccagtggctgcagtttgcattggtgtttagtagtttgtttgtgtttt-ttctctggtgcagtttaaggttcagtgctaaatctttcatctcagcaag 406  Q
    |||||||||||||| |||||| |||||| || ||| |||   |||||||| ||||||| ||||| || |||||| || |||||||| ||||||||||||     
20442653 cttccagtggctgcggtttgcgttggtgcttggtaattt---tgtgttttattctctgttgcagatttaggttcggttctaaatctctcatctcagcaaa 20442749  T
407 cctagattaatgaa 420  Q
    ||||||||||||||    
20442750 cctagattaatgaa 20442763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 13397864 - 13397992
Alignment:
8 gatagtattcacgagtgatcttattaccgcatttagagatttgttatttatcaagaattgaagtttaaagatatttctgcaaattaatatatgttgaata 107  Q
    |||||||| || |||||||| |||||||| |||||||| || |||||||||||||||||||||| ||| ||||||| ||||||||||||||| |||| ||    
13397864 gatagtatgcaggagtgatcctattaccgtatttagagcttggttatttatcaagaattgaagtataacgatatttttgcaaattaatatatattgagta 13397963  T
108 ttcttgttctgcttgtttttagacctagt 136  Q
    |||||||||||||| | ||||||||||||    
13397964 ttcttgttctgcttctgtttagacctagt 13397992  T

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Target: chr7; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 322 - 420
Target Start/End: Original strand, 13398044 - 13398144
Alignment:
322 agtttgcattggtgtttagtagtttgtttgtgtttt--ttctctggtgcagtttaaggttcagtgctaaatctttcatctcagcaagcctagattaatga 419  Q
    ||||||| |||||||||  |||||| ||||||||||  ||||||| ||||||||| ||||||||||||||| | ||||||||||||||||| ||||||||    
13398044 agtttgcgttggtgtttgttagtttttttgtgttttttttctctgctgcagtttagggttcagtgctaaatttctcatctcagcaagcctaaattaatga 13398143  T
420 a 420  Q
    |    
13398144 a 13398144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 187 - 277
Target Start/End: Original strand, 20339679 - 20339771
Alignment:
187 atcttcaataacatagccctc--atgttacctgtggtgtagggttgtattcatggcagcacggttgaaagttgttgcagcacagtttaacgtt 277  Q
    ||||| |||||||||||||||  ||||||||| ||||||||||||||||| | ||||||||||||||| ||||||||||| ||||| ||||||    
20339679 atctttaataacatagccctcgtatgttacctttggtgtagggttgtattgagggcagcacggttgaaggttgttgcagcccagttcaacgtt 20339771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 280 - 420
Target Start/End: Original strand, 20407959 - 20408097
Alignment:
280 tcagctcctctttcgtgtatggtgtgagcttccagtggctgcagtttgcattggtgtttagtagtttgtttgtgtttt-ttctctggtgcagtttaaggt 378  Q
    ||||||| || |||||||||||||||| |||| ||| ||||| |||||| |||||| || |||||   |||||||||| ||||||||||||| || ||||    
20407959 tcagctcgtcgttcgtgtatggtgtgaccttctagtagctgcggtttgcgttggtgcttggtagt---tttgtgttttattctctggtgcagatttaggt 20408055  T
379 tcagtgctaaatctttcatctcagcaagcctagattaatgaa 420  Q
    ||||| |||||||| |||||| ||||| |||| |||| ||||    
20408056 tcagttctaaatctctcatcttagcaaacctaaattagtgaa 20408097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 553 - 647
Target Start/End: Original strand, 13400952 - 13401046
Alignment:
553 ttcgagtgagcttttctaataaattcattttctgtttaaaannnnnnnnnnnnccctagatagaatgttatttggtttcaatttagttttcttaa 647  Q
    |||||||||||| |||||||||||||||||| |||||||||            ||||||||||||||||||||||||||||||||||||||||||    
13400952 ttcgagtgagctattctaataaattcattttttgtttaaaaaaatatatatatccctagatagaatgttatttggtttcaatttagttttcttaa 13401046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 776 - 901
Target Start/End: Original strand, 20410072 - 20410197
Alignment:
776 ttgctatgtatagcgctctttgattgtttcagtcttagacatttaatctctagatctgtgagaactgagaaggtaactcatcaaagccgcttataatgac 875  Q
    ||||||||||||| || ||||||||||| ||||| |||| ||||||||||||||||||| ||| || ||||  |||| |||||| ||  ||||| ||  |    
20410072 ttgctatgtatagtgcactttgattgttgcagtcctagaaatttaatctctagatctgtcagagcttagaatataacacatcaatgcaacttattatatc 20410171  T
876 tctgagtaagagaaaacaaaatcagt 901  Q
    |||||||||||||||| |||| ||||    
20410172 tctgagtaagagaaaagaaaaccagt 20410197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 20407732 - 20407830
Alignment:
37 catttagagatttgttatttatcaagaattgaagtttaaagatatttctgcaaattaatatatgttgaatattcttgttctgcttgtttttagacctag 135  Q
    ||||||||| || ||| |||||||||||||||||| |||||||| || ||| ||||||||||| |||||| ||||||||| | ||||  ||||||||||    
20407732 catttagagcttggttctttatcaagaattgaagtataaagatagttttgcgaattaatatatattgaattttcttgttccgattgtgattagacctag 20407830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 779 - 901
Target Start/End: Original strand, 20445187 - 20445309
Alignment:
779 ctatgtatagcgctctttgattgtttcagtcttagacatttaatctctagatctgtgagaactgagaaggtaactcatcaaagccgcttataatgactct 878  Q
    ||||||||||||| ||||||||||| || ||||||| ||||||||||||||||||| ||| || ||||  |||  |||||| ||  ||||| ||  ||||    
20445187 ctatgtatagcgcactttgattgttgcaatcttagaaatttaatctctagatctgtcagagcttagaatataatccatcaatgcaacttattatatctct 20445286  T
879 gagtaagagaaaacaaaatcagt 901  Q
    |||||||||||||  ||||||||    
20445287 gagtaagagaaaaacaaatcagt 20445309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 178 - 263
Target Start/End: Complemental strand, 20132916 - 20132831
Alignment:
178 tagaatctaatcttcaataacatagccctcatgttacctgtggtgtagggttgtattcatggcagcacggttgaaagttgttgcag 263  Q
    ||||||| || ||| |||||||||||||||||||||| | | |||||||||||||||||||| |||||  ||||| ||||||||||    
20132916 tagaatccaacctttaataacatagccctcatgttacattttgtgtagggttgtattcatgggagcacaattgaaggttgttgcag 20132831  T

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Target: chr7; HSP #15
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 178 - 285
Target Start/End: Complemental strand, 20140146 - 20140036
Alignment:
178 tagaatctaatcttcaataacatagccctcatgttacctgtgg---tgtagggttgtattcatggcagcacggttgaaagttgttgcagcacagtttaac 274  Q
    ||||||||| |||| ||||||||| ||||||||| ||||||||   ||||||||||||||||||| |||||  ||||| |||  ||||||||| || |||    
20140146 tagaatctactctttaataacataaccctcatgtcacctgtgggattgtagggttgtattcatgggagcacaattgaaggttactgcagcacacttcaac 20140047  T
275 gtttatcagct 285  Q
    ||| |||||||    
20140046 gttgatcagct 20140036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 495 - 647
Target Start/End: Original strand, 20408170 - 20408313
Alignment:
495 tgctagtgccagagttgttgtatctttccgaactttttcggctatttcttgtttgtatttcgagtgagcttttctaataaattcattttctgtttaaaan 594  Q
    ||||||||| ||||||||||||||||||||| |||| | || || |||||||||||| || || |||||| ||||| ||||||||||| |||||| |||     
20408170 tgctagtgc-agagttgttgtatctttccgagctttcttgggtacttcttgtttgtactttgaatgagctgttctattaaattcatttactgtttgaaa- 20408267  T
595 nnnnnnnnnnnccctagatagaatgttatttggtttcaatttagttttcttaa 647  Q
               ||||||||||||||||||||||| ||||||  ||||||||||    
20408268 -------aaatccctagatagaatgttatttggtatcaattaggttttcttaa 20408313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 776 - 834
Target Start/End: Original strand, 20426772 - 20426830
Alignment:
776 ttgctatgtatagcgctctttgattgtttcagtcttagacatttaatctctagatctgt 834  Q
    |||| ||||| |||||  |||||||||| |||||||||| |||||||||||||||||||    
20426772 ttgccatgtagagcgcattttgattgttgcagtcttagaaatttaatctctagatctgt 20426830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 794 - 859
Target Start/End: Complemental strand, 20408678 - 20408613
Alignment:
794 tttgattgtttcagtcttagacatttaatctctagatctgtgagaactgagaaggtaactcatcaa 859  Q
    |||||||||| |||||||||| ||||||||||||||||||| ||| || ||||  |||| ||||||    
20408678 tttgattgttgcagtcttagaaatttaatctctagatctgtcagagcttagaatataacccatcaa 20408613  T

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Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 20339550 - 20339612
Alignment:
50 gttatttatcaagaattgaagtttaaagatatttctgcaaattaatatatgttgaatattcttg 113  Q
    ||||| ||| || ||||||||| ||||||||||| || |||||| |||||||||||||||||||    
20339550 gttatctataaataattgaagtataaagatattt-tgaaaattattatatgttgaatattcttg 20339612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 649
Target Start/End: Complemental strand, 20139762 - 20139733
Alignment:
620 ttatttggtttcaatttagttttcttaatc 649  Q
    ||||||||||||||||||||||||||||||    
20139762 ttatttggtttcaatttagttttcttaatc 20139733  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 805 - 862
Target Start/End: Complemental strand, 20443284 - 20443227
Alignment:
805 cagtcttagacatttaatctctagatctgtgagaactgagaaggtaactcatcaaagc 862  Q
    |||||||||| ||||||||||||||||||| ||| || ||||  |||| |||||||||    
20443284 cagtcttagaaatttaatctctagatctgtcagagcttagaatataacccatcaaagc 20443227  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 607 - 700
Target Start/End: Original strand, 15963246 - 15963340
Alignment:
607 cctagatagaatgttatttggtttcaatttagttttcttaatcttcttcttgattcatctcgga-ttctgctatatatggagacaaaataactta 700  Q
    |||| |||||| ||||||||||||||||| ||||||||||| ||| || || |||||||| ||| || |||| ||||||||||||| | ||||||    
15963246 cctaaatagaaggttatttggtttcaattcagttttcttaaacttgtttttaattcatcttggatttatgctttatatggagacaagacaactta 15963340  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 15963142 - 15963194
Alignment:
237 tggcagcacggttgaaagttgttgcagcacagtttaacgtttatcagctcctc 289  Q
    |||||||| |||||||||||||||||||||| || |||||| |||||||||||    
15963142 tggcagcatggttgaaagttgttgcagcacacttcaacgttgatcagctcctc 15963194  T

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