View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17210_high_10 (Length: 407)
Name: NF17210_high_10
Description: NF17210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17210_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 292
Target Start/End: Complemental strand, 33502044 - 33501761
Alignment:
| Q |
11 |
cagagacgctagtttttcttgactttcgagaattggttttctactttgtctctaactgtcttgagtgtttcttgtacctaagttattcc----ttttcaa |
106 |
Q |
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| T |
33502044 |
cagagacgctagtttttcttgactttcgagaattggttttctactttgtctctaactgtcttgagtgtttcttgtacctaagttattcctttattttcaa |
33501945 |
T |
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| Q |
107 |
caaagttattttacgtataaaataagttacaattgcatttttaaccaattcaccccttcttaattgtatccctatgtttaattggcatagcttgtacaag |
206 |
Q |
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| T |
33501944 |
caaagtaattttacgtataaaataagttacaattgcatttttaaccaattcaccccttcttaattgtatccctatg-----ttggcataccttgtacaag |
33501850 |
T |
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| Q |
207 |
ataagttgattttattttaaccaatccaggtttgaaccttccaaaaggataatagtaacaag---ataagttgattttagaggttctac |
292 |
Q |
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| T |
33501849 |
ataagttgattttattttaaccaatccaggtttgaaccttccaaaaggataatagtaacaagataataagttgattttagaggttctac |
33501761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 340 - 391
Target Start/End: Complemental strand, 33501713 - 33501662
Alignment:
| Q |
340 |
ggtaaagaaatataaataattcttaaatctcgatcattctacagtaaaatgg |
391 |
Q |
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| T |
33501713 |
ggtaaagaaatataaataattcttaaatctcgaccattctacagtaaaatgg |
33501662 |
T |
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