View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17210_high_14 (Length: 352)
Name: NF17210_high_14
Description: NF17210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17210_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 53175375 - 53175046
Alignment:
| Q |
1 |
gttacaaagcacttaaacaaatcaactcagtgcatttttgttgcatcataaggatatgatctaaaaatcatgtcaggattccctcaacaaactctacaac |
100 |
Q |
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| T |
53175375 |
gttacaaagcacttaaacaaatcaactcagtgcatttttgttgcatcataaggatatgatctaaaaatcatgtcaggattccctcaacaaactctacaac |
53175276 |
T |
|
| Q |
101 |
tttctgaccaattctcctaaaactgtatttataaacaggttaatattaacagaagtagaaagatacacacaatttattatgaaatcctctcatccatttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53175275 |
tttctgaccaattctcctaaaactgtatttataaacagggtaatattaacagaagtagaaagatacacacaatttattatgaaatcctctcatccatttc |
53175176 |
T |
|
| Q |
201 |
tttaaaagttgacttgaacatcaaagtattttcatctacaatcctccacaagaatcgtggtattctagtaaaccaaataggtagcaaagtatgtatgatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
53175175 |
tttaaaagttgacttgaacatcaaagtattttcatctacaatcctccacaagaatcgtggtattctagtaaaccaaataggtagcaaaat-------atg |
53175083 |
T |
|
| Q |
301 |
tatccttcctgtcattctagcaataggccaactatgt |
337 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
53175082 |
tatccttcctgtcattctagcaataggccaactatgt |
53175046 |
T |
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