View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17210_high_29 (Length: 224)

Name: NF17210_high_29
Description: NF17210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17210_high_29
NF17210_high_29
[»] chr6 (11 HSPs)
chr6 (17-208)||(7993851-7994042)
chr6 (17-208)||(6594272-6594466)
chr6 (17-113)||(6602874-6602970)
chr6 (17-80)||(7131984-7132047)
chr6 (19-80)||(10579426-10579487)
chr6 (30-70)||(6423594-6423634)
chr6 (17-108)||(6410345-6410436)
chr6 (17-55)||(6432543-6432581)
chr6 (17-86)||(6426854-6426923)
chr6 (17-114)||(6596615-6596712)
chr6 (17-85)||(14821052-14821120)
[»] chr1 (7 HSPs)
chr1 (17-208)||(33160746-33160937)
chr1 (18-80)||(29658623-29658685)
chr1 (18-80)||(29691138-29691200)
chr1 (18-80)||(29718650-29718712)
chr1 (153-208)||(29658767-29658822)
chr1 (28-80)||(19468185-19468237)
chr1 (18-78)||(30827467-30827527)
[»] chr4 (1 HSPs)
chr4 (26-160)||(547203-547337)
[»] chr5 (1 HSPs)
chr5 (17-80)||(20477751-20477814)
[»] chr8 (1 HSPs)
chr8 (21-86)||(17627729-17627794)
[»] chr7 (3 HSPs)
chr7 (17-77)||(15091820-15091880)
chr7 (28-80)||(10169816-10169868)
chr7 (28-80)||(10177341-10177393)


Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 7993851 - 7994042
Alignment:
Q  17 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7993851 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatttc 7993950  T
Q  117 aatttcttgatggattttcctccaagccctcaattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtt 208  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7993951 aatttcttgacggattttcctccaagccctcaattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtt 7994042  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 6594272 - 6594466
Alignment:
Q  17 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatttc 116  Q
    |||||||||||| ||||||||||| |||||||  ||||| | |||| |||| ||||||||||| ||||||||| | ||||  | ||||| || || ||      
T  6594272 cacagaatcagctttgttttcacttgttagaagttgtcctttacttagtgatatcaaaatggagcgcacaaatatcgggaaggagagtgcagtgagttct 6594371  T
Q  117 aatttcttgatggattt---tcctccaagccctcaattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtt 208  Q
    ||||  |||| ||||||   |  |  || |||||||||||||||||||||||| |||| |||| | || |||| ||||| |||||||||||||||    
T  6594372 aattctttgagggatttcgttgttgtaaaccctcaattgaagtctctttgtttggctcgctgtgagcacttgaaagatgaaaacatcatattgtt 6594466  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 6602874 - 6602970
Alignment:
Q  17 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaat 113  Q
    |||||||| | ||||||||||||| |||| ||||||||| |||||| |||| ||||||||||||  |||| || |||||| || || ||||||||||    
T  6602874 cacagaattatccttgttttcacttgttaaaaactgtccttcacttagtgagatcaaaatggaagacacagatattgggaaagagaatgtagagaat 6602970  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 7132047 - 7131984
Alignment:
Q  17 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 80  Q
    |||||||| |||||||| |||||||||||||||||| || |||||| ||||  |||||||||||    
T  7132047 cacagaattagccttgtattcactcgttagaaactgcccttcacttagtgagttcaaaatggaa 7131984  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 10579426 - 10579487
Alignment:
Q  19 cagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 80  Q
    ||||||||||||||||||| ||||| ||||| ||||| || ||| |||| ||||||||||||    
T  10579426 cagaatcagccttgttttccctcgtaagaaattgtccttcgcttagtgagatcaaaatggaa 10579487  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 6423634 - 6423594
Alignment:
Q  30 ttgttttcactcgttagaaactgtccatcacttcgtgaaat 70  Q
    |||||||||||||||||||||||||| |||||| |||||||    
T  6423634 ttgttttcactcgttagaaactgtccttcacttagtgaaat 6423594  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 6410436 - 6410345
Alignment:
Q  17 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtag 108  Q
    |||||||| ||||  |||||||||||||||||| ||||| ||||||  ||| ||||||||| || | |||| | |||||| || ||||||||    
T  6410436 cacagaattagcccagttttcactcgttagaaattgtccttcacttaatgagatcaaaatgaaaagaacaagtattgggaaagagagtgtag 6410345  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 6432581 - 6432543
Alignment:
Q  17 cacagaatcagccttgttttcactcgttagaaactgtcc 55  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  6432581 cacagaatcagccctgttttcactcgttggaaactgtcc 6432543  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 6426923 - 6426854
Alignment:
Q  17 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcaca 86  Q
    ||||||| || | ||||||||||| |||||||||||||| ||| || |||| || ||||||||| |||||    
T  6426923 cacagaaacaacattgttttcacttgttagaaactgtccttcaattagtgagattaaaatggaaggcaca 6426854  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 6596615 - 6596712
Alignment:
Q  17 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatt 114  Q
    ||||||||||||| ||||||| ||||| ||||| ||||| || ||| |||| ||||||||| ||  ||||  | ||||||  | ||||||||||||||    
T  6596615 cacagaatcagccgtgttttccctcgtaagaaattgtccttcgcttagtgagatcaaaatgcaaaacacagctattgggacggagagtgtagagaatt 6596712  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 14821120 - 14821052
Alignment:
Q  17 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcac 85  Q
    ||||||| || ||||||||||||||||||| ||||||   ||||||  |||| ||||||||||| ||||    
T  14821120 cacagaaacaaccttgttttcactcgttaggaactgttattcacttattgaagtcaaaatggaatgcac 14821052  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 33160937 - 33160746
Alignment:
Q  17 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatttc 116  Q
    |||||||||||| ||||||||||| |||| ||||||||| |||||| |||| |||||||||||| |||||| | |||||| || |||| ||||| ||       
T  33160937 cacagaatcagcattgttttcacttgttacaaactgtccttcacttagtgacatcaaaatggaatgcacaactattgggaaagagagtatagagcatgat 33160838  T
Q  117 aatttcttgatggattttcctccaagccctcaattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtt 208  Q
    ||||  |||| ||| |||     |||||||||||| |||||||||| ||| ||   |||||| || |||||||||| ||||||| |||||||    
T  33160837 aattctttgacggactttgaagtaagccctcaattaaagtctctttctttggcggactgtcagcacttgagagatgaaaacatcgtattgtt 33160746  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 29658623 - 29658685
Alignment:
Q  18 acagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 80  Q
    ||||||||||| |||||||| ||||||| ||| ||||| |||||| |||| ||||||||||||    
T  29658623 acagaatcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaa 29658685  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 29691138 - 29691200
Alignment:
Q  18 acagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 80  Q
    ||||||||||| |||||||| ||||||| ||| ||||| |||||| |||| ||||||||||||    
T  29691138 acagaatcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaa 29691200  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 29718650 - 29718712
Alignment:
Q  18 acagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 80  Q
    ||||||||||| |||||||| ||||||| ||| ||||| |||||| |||| ||||||||||||    
T  29718650 acagaatcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaa 29718712  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 29658767 - 29658822
Alignment:
Q  153 aagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtt 208  Q
    |||||||||||||| |||| ||||||| | |||||||||  |||||||||||||||    
T  29658767 aagtctctttgtttggctcgctgtcaatacttgagagatcaaaacatcatattgtt 29658822  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 19468185 - 19468237
Alignment:
Q  28 ccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 80  Q
    |||||||| |||||||||| || ||||| |||||| |||| ||||||||||||    
T  19468185 ccttgtttacactcgttaggaattgtccttcacttagtgagatcaaaatggaa 19468237  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 30827527 - 30827467
Alignment:
Q  18 acagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatgg 78  Q
    ||||||||||| |||||||| ||||||| ||| ||||| ||||||  ||| ||||||||||    
T  30827527 acagaatcagctttgttttcgctcgttacaaattgtccttcacttactgacatcaaaatgg 30827467  T

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Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 547337 - 547203
Alignment:
Q  26 agccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatttcaatttcttg 125  Q
    |||||||||| |||||||||| || ||| | |||||| |||| ||||||||||||| ||||||  ||||||| | ||||||||||||||  ||||  ||     
T  547337 agccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctttc 547238  T
Q  126 atggattttcctccaagccctcaattgaagtctct 160  Q
    | |||||||  |  |||||||||||||||||||||    
T  547237 aaggattttgttgtaagccctcaattgaagtctct 547203  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 20477751 - 20477814
Alignment:
Q  17 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 80  Q
    |||||||| |||||||| |||||| |||||||||||||| |||||| |||| ||||||||||||    
T  20477751 cacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaa 20477814  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 17627729 - 17627794
Alignment:
Q  21 gaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcaca 86  Q
    |||||||||||||||||||||||||| || ||||| ||||||  ||| || ||||||||| |||||    
T  17627729 gaatcagccttgttttcactcgttagtaaatgtccttcacttaatgagataaaaatggaatgcaca 17627794  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 15091820 - 15091880
Alignment:
Q  17 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatg 77  Q
    ||||||| || ||||||||||||||| |||||||||||| || |||  |||||||||||||    
T  15091820 cacagaaacaaccttgttttcactcggtagaaactgtccttcgcttattgaaatcaaaatg 15091880  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 10169816 - 10169868
Alignment:
Q  28 ccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 80  Q
    |||||||| |||||||||| || ||||| |||||| |||| ||||||||||||    
T  10169816 ccttgtttgcactcgttaggaattgtccttcacttagtgagatcaaaatggaa 10169868  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 10177341 - 10177393
Alignment:
Q  28 ccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 80  Q
    |||||||| |||||||||| || ||||| |||||| |||| ||||||||||||    
T  10177341 ccttgtttgcactcgttaggaattgtccttcacttagtgagatcaaaatggaa 10177393  T

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