View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17210_low_1 (Length: 772)
Name: NF17210_low_1
Description: NF17210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17210_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 664; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 15 - 753
Target Start/End: Complemental strand, 25960853 - 25960112
Alignment:
| Q |
15 |
aatattacagcattataatcaaagtttcaaactatggaccctttttagtcgcactgtgatcaatgatattccagaaaactgttgttaaagatatttgaca |
114 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25960853 |
aatattacagcattataatcaaagtttcaaattatggaccctttttagtcgcactgtgatcaatgatattccagaaaactgttgttaaagatatttgaca |
25960754 |
T |
|
| Q |
115 |
tggctggaatcatggtatagaaaataacatttagacgattgcagactatttttat---tctacgttgtgtgcaatcataactccgtgatagcatgcagta |
211 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25960753 |
tggctggaatcatggtatagaaaataacatttagacgattgcagactatttttatggatctacgttgtgtgcaatcataactccgtgatagcttgcagta |
25960654 |
T |
|
| Q |
212 |
agcaaagtctagagtgtccgatcaagatttcaaatttaaacggtccacgtctcaagatgttactggctgcgtgtagtcacactgcgcacattccaaatcc |
311 |
Q |
| |
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||||| ||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25960653 |
agcaacgtctagagtatccaatcaagatttcaaatttaaacggtccacgtcttaagatgttactggctgcgtgtagtcacactgcgcacattccaaatcc |
25960554 |
T |
|
| Q |
312 |
aannnnnnnnaccacatgcgggtttattttttcatggataaagcgtagaagaaaactaaccagggttatagtcaccaaacacaacctgagccagagccat |
411 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25960553 |
aattttttttaccacatgcgggtttattttttcatggataaagcgtagaagaaaactaaccagggttatagtcaccaaacacaacctgagccagagccat |
25960454 |
T |
|
| Q |
412 |
tccaccaagttcaccaggataaccagcccacaaaatccctccaattttgtcatcaaccttagcaaaagaaatatcaacagggccaccacacaaaagtacc |
511 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25960453 |
tccaccaagttcaccaggataaccagcccacaaaatccctccaattttgtcatcaaccttagcaaaagaaatatcaacagggccaccacagaaaagtacc |
25960354 |
T |
|
| Q |
512 |
aaaataaccggtcttttagacgctttagcaacactattaataagttcccgttgtttccctggcaactctaagtcatctctatcatgtccttcactctctt |
611 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25960353 |
aaaataaccggtcttttagacgctttagcaacactattaataagttcctgttgtttccctggcaactctaagtcatctctatcatgtccttcactctctt |
25960254 |
T |
|
| Q |
612 |
gactttgatccaatcccataaccaacacaacataatcaactactttagcaacttcaactgctcggtcaatttcagctgaaacacactttgttccatcgct |
711 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
25960253 |
gactttgatccaatcccataaccaacacaacataatcaactactttagcaacttcaacagctctgtcaatttcagctgaaacacactttgttccatcgct |
25960154 |
T |
|
| Q |
712 |
acatccaggatgatacaacaagttatcagaatagttctcaaa |
753 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25960153 |
acatccaggatgatacaacaagttatcagaatagttctcaaa |
25960112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 324 - 708
Target Start/End: Original strand, 25925021 - 25925405
Alignment:
| Q |
324 |
cacatgcgggtttattttttcatggataaagcgtagaagaaaactaaccagggttatagtcaccaaacacaacctgagccagagccattccaccaagttc |
423 |
Q |
| |
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|||||| | |||||||| | ||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
25925021 |
cacatgtgtgtttatttgtcaatggataaagcatagaagaaaacaaacctgggttatagtcaccaaacacaacctgagcaagagcccttccaccaagttc |
25925120 |
T |
|
| Q |
424 |
accaggataaccagcccacaaaatccctccaattttgtcatcaaccttagcaaaagaaatatcaacagggccaccacacaaaagtaccaaaataaccggt |
523 |
Q |
| |
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|||||||||||||||||| | |||||||||||||||||||| | ||||||||||| |||||||||||| |||||||||||||| ||||||||||| || |
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| T |
25925121 |
accaggataaccagcccaaataatccctccaattttgtcattattcttagcaaaagtaatatcaacaggaccaccacacaaaagcaccaaaataacaggc |
25925220 |
T |
|
| Q |
524 |
cttttagacgctttagcaacactattaataagttcccgttgtttccctggcaactctaagtcatctctatcatgtccttcactctcttgactttgatcca |
623 |
Q |
| |
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| ||||| |||||||||||||| |||||||||||| |||| || || ||||||||||| |||||||||||| || ||| |||||||||||||| |||| |
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| T |
25925221 |
ttcttagaagctttagcaacactgttaataagttcctgttgcttaccaggcaactctaaatcatctctatcacgtgattccctctcttgactttggtcca |
25925320 |
T |
|
| Q |
624 |
atcccataaccaacacaacataatcaactactttagcaacttcaactgctcggtcaatttcagctgaaacacactttgttccatc |
708 |
Q |
| |
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||||||||||||| | |||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25925321 |
atcccataaccaaaataacataatcacttattttagcaacttcaactgctcggtcaatttcagctgaagcacactttgttccatc |
25925405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 345 - 726
Target Start/End: Original strand, 25906547 - 25906928
Alignment:
| Q |
345 |
atggataaagcgtagaagaaaactaaccagggttatagtcaccaaacacaacctgagccagagccattccaccaagttcaccaggataaccagcccacaa |
444 |
Q |
| |
|
||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | |
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| T |
25906547 |
atggataaagcatagaagaaaacaaacctgggttatagtcaccaaacacaacctgagcaagagcccttccaccaagttcaccaggataaccagcccaaat |
25906646 |
T |
|
| Q |
445 |
aatccctccaattttgtcatcaaccttagcaaaagaaatatcaacagggccaccacacaaaagtaccaaaataaccggtcttttagacgctttagcaaca |
544 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| |||||||||||| ||||| |||||||| ||||||||||| || | ||||| ||||| |||||| |
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| T |
25906647 |
aatccctccaattttgtcattattcttagcaaaagtaatatcaacaggaccaccgcacaaaagcaccaaaataacaggcttcttagaagctttcgcaaca |
25906746 |
T |
|
| Q |
545 |
ctattaataagttcccgttgtttccctggcaactctaagtcatctctatcatgtccttcactctcttgactttgatccaatcccataaccaacacaacat |
644 |
Q |
| |
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|| |||||||||| | |||| || || ||||||||||| | |||||||||| || ||| ||||||||||||| || |||||||||||||| | ||||| |
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| T |
25906747 |
ctgttaataagtttctgttgcttaccaggcaactctaaatgatctctatcaagtgtttccgtctcttgactttggtctaatcccataaccaaaataacat |
25906846 |
T |
|
| Q |
645 |
aatcaactactttagcaacttcaactgctcggtcaatttcagctgaaacacactttgttccatcgctacatccaggatgata |
726 |
Q |
| |
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||||| || |||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| |||||| |
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| T |
25906847 |
aatcacttattttagcaacttcaactgctcggtcaatttcggctgaagcacactttgttccatcagtacatccagaatgata |
25906928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 358 - 719
Target Start/End: Original strand, 25884932 - 25885293
Alignment:
| Q |
358 |
agaagaaaactaaccagggttatagtcaccaaacacaacctgagccagagccattccaccaagttcaccaggataaccagcccacaaaatccctccaatt |
457 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
25884932 |
agaagaaaacaaacctgggttatagtcaccaaacacaacctgagcaagagcccttccaccaagttcaccaggataaccagcccaaataatccctccaatt |
25885031 |
T |
|
| Q |
458 |
ttgtcatcaaccttagcaaaagaaatatcaacagggccaccacacaaaagtaccaaaataaccggtcttttagacgctttagcaacactattaataagtt |
557 |
Q |
| |
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||||||| | ||||||||||| |||||||||||| ||||||||||||| |||||||||||| || | || || |||||||||||||| |||||||||| |
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|
| T |
25885032 |
ttgtcattattcttagcaaaagtaatatcaacaggaccaccacacaaaattaccaaaataacaggcttcttggaagctttagcaacactgttaataagtt |
25885131 |
T |
|
| Q |
558 |
cccgttgtttccctggcaactctaagtcatctctatcatgtccttcactctcttgactttgatccaatcccataaccaacacaacataatcaactacttt |
657 |
Q |
| |
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| |||| || || ||||||||||| | |||||||||| || ||| ||||||||||||| || |||||||||||||| | |||||||||| || ||| |
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|
| T |
25885132 |
tctgttgcttaccaggcaactctaaatgatctctatcaagtgtttccgtctcttgactttggtctaatcccataaccaaaataacataatcacttatttt |
25885231 |
T |
|
| Q |
658 |
agcaacttcaactgctcggtcaatttcagctgaaacacactttgttccatcgctacatccag |
719 |
Q |
| |
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||||||||||||||||||||||||||| |||||| |||||||| |||||| ||||||||| |
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|
| T |
25885232 |
agcaacttcaactgctcggtcaatttcggctgaagcacactttactccatcagtacatccag |
25885293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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