View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17210_low_12 (Length: 372)
Name: NF17210_low_12
Description: NF17210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17210_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 26557024 - 26556676
Alignment:
| Q |
1 |
tcttcaaatctaaaccgaatccaatccaattattgaaaaaacacataaacctaatccatttcattttgaagggccccattaactaaagatatataaatag |
100 |
Q |
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| T |
26557024 |
tcttcaaatctaaaccgaatccaatccaattattaaaaaaacacataaacctaatccattttattttgatgggccccattaactaaagatatataaatag |
26556925 |
T |
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| Q |
101 |
catcatttaaaaccctaaaacattcaaactcacaacttttcgagtcgcattcaactcgtcactgagaaactagtttcaatcgcaatcaacggtaacaaat |
200 |
Q |
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| T |
26556924 |
catcatttaaaaccctaaaacattcaaactcacaacttttcgagtcgcattcaactcgtcactgagaaactagtttcaatcgcaatcaacagtaacaaat |
26556825 |
T |
|
| Q |
201 |
tccgacctaggtttttcttcttcgcttatttctcaattttctctttcaatcattatatctcnnnnnnnnnnnnatcatcactacactatgtaatctaatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || |||||| ||||||||||||||| | |
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| T |
26556824 |
tccgacctaggtttttcttcttcgcttatttctcaattttctctttcaatcattctagttc----ttttgtttataatcactgcactatgtaatctaaac |
26556729 |
T |
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| Q |
301 |
ttattcttttgaatttgaattttgaatcaaaatcacgattgaagtaattcaca |
353 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26556728 |
ttattcttttgattttgaattttgaatcaaaatcacgattgaagtaattcaca |
26556676 |
T |
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