View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17210_low_15 (Length: 355)

Name: NF17210_low_15
Description: NF17210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17210_low_15
NF17210_low_15
[»] chr5 (6 HSPs)
chr5 (16-346)||(2326229-2326559)
chr5 (147-224)||(4100463-4100540)
chr5 (130-211)||(39572365-39572446)
chr5 (147-223)||(4146508-4146584)
chr5 (130-214)||(39576368-39576452)
chr5 (141-220)||(3561523-3561602)
[»] chr8 (5 HSPs)
chr8 (127-263)||(9841942-9842078)
chr8 (70-193)||(9860653-9860776)
chr8 (146-220)||(27360973-27361047)
chr8 (301-346)||(9902803-9902848)
chr8 (301-346)||(9841853-9841898)
[»] chr1 (3 HSPs)
chr1 (124-231)||(5054191-5054298)
chr1 (124-214)||(46446001-46446091)
chr1 (133-214)||(46672085-46672166)
[»] chr3 (1 HSPs)
chr3 (147-214)||(7256841-7256908)
[»] scaffold0658 (1 HSPs)
scaffold0658 (146-220)||(2850-2924)
[»] chr6 (1 HSPs)
chr6 (131-202)||(112623-112694)


Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 346
Target Start/End: Original strand, 2326229 - 2326559
Alignment:
Q  16 gtttttaatgtctggagatgtatttcctatttgattttgacactgaggtacacgaaagataatttgattgttgatccacaagcaaaatctcacaagatgg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2326229 gtttttaatgtctggagatgtatttcctatttgattttgacactgaggtacacgaaagataatttgattgttgatccacaagcaaaatctcacaagatgg 2326328  T
Q  116 atataaacctcatgaccacaagtagccacataatcaaatggtcccatctcatgataaagagataattttcctgaatcaaaattcaaaatgtagatttgaa 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2326329 atataaacctcatgaccacaagtagccacataatcaaatggtcccatctcatgataaagagacaattttcctgaatcaaaattcaaaatgtagatttgaa 2326428  T
Q  216 atgttctattaaaatcattagacataatgcaagagaggcgattacccaacattaaacaatttttagccagaatattcaactcattgggaagtggatattc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2326429 atgttctattaaaatcattagacataatgcaagagaggcgattacccaacattaaacaatttttagccagaatattcaactcattgggaagtggatattc 2326528  T
Q  316 tcgcataataatttccttgtcaacattcatc 346  Q
    |||||||||||||||||||||||||||||||    
T  2326529 tcgcataataatttccttgtcaacattcatc 2326559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 4100463 - 4100540
Alignment:
Q  147 aatcaaatggtcccatctcatgataaagagataattttcctgaatcaaaattcaaaatgtagatttgaaatgttctat 224  Q
    ||||||| |||||||||||||||||||||||  |||||||| | ||||||| ||||||||||||||||||||||||||    
T  4100463 aatcaaaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctat 4100540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 39572446 - 39572365
Alignment:
Q  130 accacaagtagccacataatcaaatggtcccatctcatgataaagagataattttcctgaatcaaaattcaaaatgtagatt 211  Q
    |||||||| ||| ||||||||||| |||||||||||||||||| ||||  |||||| ||||||||||| |||||||||||||    
T  39572446 accacaagcagcaacataatcaaaaggtcccatctcatgataaggagaccattttcttgaatcaaaatccaaaatgtagatt 39572365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 4146584 - 4146508
Alignment:
Q  147 aatcaaatggtcccatctcatgataaagagataattttcctgaatcaaaattcaaaatgtagatttgaaatgttcta 223  Q
    ||||||| |||||||||||||||||||||||  |||||||| | ||||||| |||||  ||||||||||||||||||    
T  4146584 aatcaaaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaacatagatttgaaatgttcta 4146508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 214
Target Start/End: Complemental strand, 39576452 - 39576368
Alignment:
Q  130 accacaagtagccacataatcaaatggtcccatctcatgataaagagataattttcctgaatcaaaattcaaaatgtagatttga 214  Q
    ||||| || ||| |||||||  || |||||||||||||||||||||||  ||| |||||||||||||| |||| |||||||||||    
T  39576452 accactagcagcaacataattgaaaggtcccatctcatgataaagagaccattctcctgaatcaaaatccaaagtgtagatttga 39576368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 3561523 - 3561602
Alignment:
Q  141 ccacataatcaaatggtcccatctcatgataaagagataattttcctgaatcaaaattcaaaatgtagatttgaaatgtt 220  Q
    |||||||||||||  || ||||||| |||||||| ||  ||||||||||||  | || ||||||||| ||||||||||||    
T  3561523 ccacataatcaaagagtaccatctcgtgataaagtgaccattttcctgaattgatatccaaaatgtaaatttgaaatgtt 3561602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 127 - 263
Target Start/End: Complemental strand, 9842078 - 9841942
Alignment:
Q  127 atgaccacaagtagccacataatcaaatggtcccatctcatgataaagagataattttcctgaatcaaaattcaaaatgtagatttgaaatgttctatta 226  Q
    ||||||||||| || |||||||||||| |||||||||||||||| ||||||  |||||||||||||||||| || ||||||||||||| |||| |||| |    
T  9842078 atgaccacaagcagacacataatcaaaaggtcccatctcatgatgaagagaccattttcctgaatcaaaatccagaatgtagatttgatatgtactataa 9841979  T
Q  227 aaatcattagacataatgcaagagaggcgattaccca 263  Q
      ||| |||| |  ||||||||| |||||||| ||||    
T  9841978 gtatctttagtcgcaatgcaagaaaggcgatttccca 9841942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 193
Target Start/End: Complemental strand, 9860776 - 9860653
Alignment:
Q  70 aaagataatttgattgttgatccacaagcaaaatctcacaagatggatataaacctcatgaccacaagtagccacataatcaaatggtcccatctcatga 169  Q
    |||||||||||||| |||||||||||| | ||||  |||||     || | || ||| |||||||||| || |||||||||||| |||||||||||||||    
T  9860776 aaagataatttgatggttgatccacaaacgaaatgccacaaacaaaatctgaagctcttgaccacaagcagacacataatcaaaaggtcccatctcatga 9860677  T
Q  170 taaagagataattttcctgaatca 193  Q
    ||||||||  ||||||||||||||    
T  9860676 taaagagaccattttcctgaatca 9860653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 27361047 - 27360973
Alignment:
Q  146 taatcaaatggtcccatctcatgataaagagataattttcctgaatcaaaattcaaaatgtagatttgaaatgtt 220  Q
    |||||||| |||||||||||||||||||||    |||||||| ||||||||| |||| | ||||||||| |||||    
T  27361047 taatcaaaaggtcccatctcatgataaagattccattttcctaaatcaaaatccaaagtatagatttgatatgtt 27360973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 9902848 - 9902803
Alignment:
Q  301 gggaagtggatattctcgcataataatttccttgtcaacattcatc 346  Q
    |||||||||||||||||| | |||||||||||||||||||| ||||    
T  9902848 gggaagtggatattctcgtagaataatttccttgtcaacatccatc 9902803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 9841898 - 9841853
Alignment:
Q  301 gggaagtggatattctcgcataataatttccttgtcaacattcatc 346  Q
    |||||||||||||||||| | |||| ||||||||||||||| ||||    
T  9841898 gggaagtggatattctcgtacaatagtttccttgtcaacatccatc 9841853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 124 - 231
Target Start/End: Original strand, 5054191 - 5054298
Alignment:
Q  124 ctcatgaccacaagtagccacataatcaaatggtcccatctcatgataaagagataattttcctgaatcaaaattcaaaatgtagatttgaaatgttcta 223  Q
    ||||||||| |||| ||| ||||||||||| |||||||||||||||||| ||||  ||||||| | |||||||| |||||| ||||| ||||||||| ||    
T  5054191 ctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatgataatgagaccattttcccgtatcaaaatccaaaatatagatctgaaatgttgta 5054290  T
Q  224 ttaaaatc 231  Q
    | ||||||    
T  5054291 taaaaatc 5054298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 46446091 - 46446001
Alignment:
Q  124 ctcatgaccacaagtagccacataatcaaatggtcccatctcatgataaagagataattttcctgaatcaaaattcaaaatgtagatttga 214  Q
    |||||||||||| | |||||||||||||||  ||||||||||||||||||||||  |||  || |||||||||| ||||||||||||||||    
T  46446091 ctcatgaccacaggcagccacataatcaaaatgtcccatctcatgataaagagaccattcccccgaatcaaaatccaaaatgtagatttga 46446001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 46672085 - 46672166
Alignment:
Q  133 acaagtagccacataatcaaatggtcccatctcatgataaagagataattttcctgaatcaaaattcaaaatgtagatttga 214  Q
    ||||| |||||||||||||||  |||||||| ||||||| |||||  |||||||||||||||||| ||||||||||||||||    
T  46672085 acaagcagccacataatcaaaatgtcccatcgcatgatagagagaccattttcctgaatcaaaatccaaaatgtagatttga 46672166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 7256908 - 7256841
Alignment:
Q  147 aatcaaatggtcccatctcatgataaagagataattttcctgaatcaaaattcaaaatgtagatttga 214  Q
    ||||||| |||||||||  ||||||||||||  |||||| |||||||||||  |||||||||||||||    
T  7256908 aatcaaaaggtcccatcatatgataaagagaccattttcttgaatcaaaatctaaaatgtagatttga 7256841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 2850 - 2924
Alignment:
Q  146 taatcaaatggtcccatctcatgataaagagataattttcctgaatcaaaattcaaaatgtagatttgaaatgtt 220  Q
    |||||||| |||||||||||||||||||||    |||||||| ||||||||| |||| | ||||||||| |||||    
T  2850 taatcaaaaggtcccatctcatgataaagattccattttcctaaatcaaaatccaaagtatagatttgatatgtt 2924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 112623 - 112694
Alignment:
Q  131 ccacaagtagccacataatcaaatggtcccatctcatgataaagagataattttcctgaatcaaaattcaaa 202  Q
    |||||| ||||| |||||||||| || |||||||||||||||||||   |||||||| |||| |||| ||||    
T  112623 ccacaaatagccccataatcaaaaggccccatctcatgataaagagtccattttcctaaatccaaatccaaa 112694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University