View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17210_low_17 (Length: 336)
Name: NF17210_low_17
Description: NF17210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17210_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 320
Target Start/End: Complemental strand, 34504439 - 34504127
Alignment:
| Q |
9 |
gagaagaaaattgaatgtccctttccaacagataaattggccattgaagatgttcagttcaagacttgtaacattaaaagtagtgtgttctgataagtag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34504439 |
gagaagaaaattgaatgtccctttccaacagataaattggctattgaagatgttcagttcaagacttgtaacattaaaagtagtgtgttctgataagtag |
34504340 |
T |
|
| Q |
109 |
aggtttcttccattatgtatgcaagtaaaattttt-aaaaggaatgaataatatatatttagttcaacatagaactatcaatttacttatccattatata |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
34504339 |
aggtttcttccattatgtatgcaagtaaattttttgaaaatgaatgaataatatatatttagttcaacatagaactattaatttacttatccattattta |
34504240 |
T |
|
| Q |
208 |
tacactccattaattaatttcaggaaatactagttaaaaaacagtgaagactaaacatttagtcacttggcccactatgcaaatgcacgttgttattgaa |
307 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
34504239 |
tacactccattaattaatttcagaaaatactagttaaaaaacagtgaagactaaacatttagtcacttggtccactatgcaaatgtacgttgttattgaa |
34504140 |
T |
|
| Q |
308 |
tcagttcaaaagt |
320 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34504139 |
tcagttcaaaagt |
34504127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 45077903 - 45077808
Alignment:
| Q |
9 |
gagaagaaaattgaatgtccctttccaacagataaattggccattgaagatgttcagttcaagacttgtaacattaaaagtagtgtgttctgataa |
104 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||| | ||||| ||| ||||||| ||||||||||||||| | |||||||||| ||||||||| |
|
|
| T |
45077903 |
gagaaggaaattgaatgtccttttccaacagataaactagccatcgaaaatgttcaattcaagacttgtaacttccaaagtagtgtcttctgataa |
45077808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 45067113 - 45067033
Alignment:
| Q |
9 |
gagaagaaaattgaatgtccctttccaacagataaattggccattgaagatgttcagttcaagacttgtaacattaaaagt |
89 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||| | |||||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
45067113 |
gagaagaaaatcgaatgtccttttccaacagataaactacccattgaaaatgttcagttcaagacttgtaactttcaaagt |
45067033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 45074660 - 45074585
Alignment:
| Q |
19 |
ttgaatgtccctttccaacagataaattggccattgaagatgttcagttcaagacttgtaacattaaaagtagtgt |
94 |
Q |
| |
|
|||||||||| |||||||| |||||| | |||||||| ||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
45074660 |
ttgaatgtccttttccaactgataaacttaccattgaaaatgttcagttcaagacttgtaacttcaaaagtagtgt |
45074585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 45082199 - 45082104
Alignment:
| Q |
9 |
gagaagaaaattgaatgtccctttccaacagataaattggccattgaagatgttcagttcaagacttgtaacattaaaagtagtgtgttctgataa |
104 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||| | |||||||| ||||||| ||||||||||| ||| | |||||||||| ||||||||| |
|
|
| T |
45082199 |
gagaaggaaattgaatgtccttttccaagagataaactacccattgaaaatgttcaattcaagacttgcaacttccaaagtagtgtcttctgataa |
45082104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 12698067 - 12697985
Alignment:
| Q |
17 |
aattgaatgtccctttccaacagataaattggccattgaagatgttcagttcaagacttgtaacattaaaagtagtgtgttct |
99 |
Q |
| |
|
|||||||||||| |||||||||| |||| | |||||||| |||||| |||||||||||||||| || |||||||||| |||| |
|
|
| T |
12698067 |
aattgaatgtccttttccaacagttaaactacccattgaaaatgttctgttcaagacttgtaactttcaaagtagtgtcttct |
12697985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University