View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17210_low_18 (Length: 326)
Name: NF17210_low_18
Description: NF17210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17210_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 40965592 - 40965282
Alignment:
| Q |
1 |
aaggggctttattggagtatgtggaagagtacaaaactgagaagagaatttggttgtagagcgagaagtagaaggagcatagaagcaattcatagaccta |
100 |
Q |
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| T |
40965592 |
aaggggctttattggagtatgtggaagagtacaaaactgagaagagaatttggttgtagagcgagaagtagaaggaacatagaagcaattcatagaccta |
40965493 |
T |
|
| Q |
101 |
gtaatggtgggaagtggcgatgatggatgaattcgccacggttgaacggttgaagatttaatcaaatccattcggtttttctcagaaaggacaaagtgtg |
200 |
Q |
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| T |
40965492 |
gtaatggtgggaagtggcgatgatggaggaattcgccgcggttgaacggttgaagatttaatcaaatccattcggtttttctcagaaaggacaaagagtg |
40965393 |
T |
|
| Q |
201 |
atgtgatatgaaaatattactgatttatatttggagggaatacatatgggccaagctcgtcccatacatctaaagcaatgctatcatgaaagatggtttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40965392 |
atgtgatatgaaaatattactgatttatatttggagggaatacatatgggccaagctcgtcccatacatctaaagcaatgctatcatgaaagataatttc |
40965293 |
T |
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| Q |
301 |
ttttttcacct |
311 |
Q |
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||||||||||| |
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| T |
40965292 |
ttttttcacct |
40965282 |
T |
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