View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17210_low_21 (Length: 283)
Name: NF17210_low_21
Description: NF17210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17210_low_21 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 45094727 - 45094445
Alignment:
| Q |
1 |
tttaagcattgatctaagatagaccatttattaagaactcaatcttaacttaatgctcgcatttaaatgaaatccacctacttacgtgagtttcacaaaa |
100 |
Q |
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| T |
45094727 |
tttaagtattgatctaagatagaccatttattaagacctcaatcttaacttaatactcgcatttaaatgaaatccacctacttacgtgagtttcacaaaa |
45094628 |
T |
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| Q |
101 |
tttaggtaaagccgtataaatttcaacaacttaaaaataatatgttaaaaaatgtgagttagtggcactttccttcctctatatatgatccaacgtgaga |
200 |
Q |
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| T |
45094627 |
tttaggtaaagccgtataaatttcaacaacttaaaaataatatgttaaaaaatgtgagttagtggcactttccttcctctatatatgatccaacgtgaga |
45094528 |
T |
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| Q |
201 |
gaaaaggaatttataaaaggtgaaaaatgaaaaacaaacgtgcattgacaggagcagaaactgaaaaactcacaaagggtggt |
283 |
Q |
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| T |
45094527 |
gaaaaggaatttataaaaggtgaaaaatgaaaaacaaacgtgcatagacaggagcagaaactgaaaaactcacaaagggtggt |
45094445 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 5891914 - 5891873
Alignment:
| Q |
115 |
tataaatttcaacaacttaaaaataatatgttaaaaaatgtg |
156 |
Q |
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| T |
5891914 |
tataaattttaacaactaaaaaataatatgttaaaaaatgtg |
5891873 |
T |
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