View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17210_low_22 (Length: 267)

Name: NF17210_low_22
Description: NF17210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17210_low_22
NF17210_low_22
[»] chr1 (1 HSPs)
chr1 (116-240)||(5928085-5928209)
[»] chr7 (1 HSPs)
chr7 (107-187)||(20087911-20087989)
[»] chr4 (3 HSPs)
chr4 (127-187)||(22714614-22714674)
chr4 (127-187)||(22990551-22990611)
chr4 (127-187)||(28948871-28948931)
[»] scaffold0009 (1 HSPs)
scaffold0009 (127-187)||(200487-200547)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 116 - 240
Target Start/End: Complemental strand, 5928209 - 5928085
Alignment:
Q  116 tatatagaaacagttaaaactgaaatatagagcttatggaggataagtgcacaacaaatctgaagcaaaaaacacagacatctaaaacctgttaagagta 215  Q
    ||||||||| || ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5928209 tatatagaaccacttaaaactgaaatatagagtttattgaggataagtgcacaacaaatctgaagcaaaaaacacagacatctaaaacctgttaagagta 5928110  T
Q  216 aatataaagcactcatacaatgcaa 240  Q
    |||||||||||||||||||||||||    
T  5928109 aatataaagcactcatacaatgcaa 5928085  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 20087989 - 20087911
Alignment:
Q  107 tagagcttatatatagaaacagttaaaactgaaatatagagcttatggaggataagtgcacaacaaatctgaagcaaaaaa 187  Q
    |||||||||||||||  | ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| ||||||    
T  20087989 tagagcttatatata--accagttaaaactgaaatatagagcttatggaggacaggtgaacaacaaatctgaaggaaaaaa 20087911  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 22714614 - 22714674
Alignment:
Q  127 agttaaaactgaaatatagagcttatggaggataagtgcacaacaaatctgaagcaaaaaa 187  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||    
T  22714614 agttaaaactgaaatatagagtttatggaggataagtgaacaacaaatccgaagcaaaaaa 22714674  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 22990611 - 22990551
Alignment:
Q  127 agttaaaactgaaatatagagcttatggaggataagtgcacaacaaatctgaagcaaaaaa 187  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||    
T  22990611 agttaaaactgaaatatagagtttatggaggataagtgaacaacaaatccgaagcaaaaaa 22990551  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 28948871 - 28948931
Alignment:
Q  127 agttaaaactgaaatatagagcttatggaggataagtgcacaacaaatctgaagcaaaaaa 187  Q
    ||||||||||||||||||||| ||| |||||||||||| |||||||||| |||||||||||    
T  28948871 agttaaaactgaaatatagagtttaaggaggataagtgaacaacaaatccgaagcaaaaaa 28948931  T

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Target: scaffold0009 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 200487 - 200547
Alignment:
Q  127 agttaaaactgaaatatagagcttatggaggataagtgcacaacaaatctgaagcaaaaaa 187  Q
    |||||||||||||||||| || |||||||||||||||| |||||||||| |||||||||||    
T  200487 agttaaaactgaaatatatagtttatggaggataagtgaacaacaaatccgaagcaaaaaa 200547  T

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