View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17210_low_30 (Length: 228)
Name: NF17210_low_30
Description: NF17210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17210_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 6 - 217
Target Start/End: Original strand, 48592071 - 48592282
Alignment:
| Q |
6 |
tggacatcatcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48592071 |
tggacatcttcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
48592170 |
T |
|
| Q |
106 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48592171 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
48592270 |
T |
|
| Q |
206 |
cctatgatgatg |
217 |
Q |
| |
|
|||||||||||| |
|
|
| T |
48592271 |
cctatgatgatg |
48592282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 6 - 217
Target Start/End: Original strand, 48601766 - 48601977
Alignment:
| Q |
6 |
tggacatcatcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48601766 |
tggacatcttcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
48601865 |
T |
|
| Q |
106 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48601866 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
48601965 |
T |
|
| Q |
206 |
cctatgatgatg |
217 |
Q |
| |
|
|||||||||||| |
|
|
| T |
48601966 |
cctatgatgatg |
48601977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 6 - 217
Target Start/End: Complemental strand, 23232261 - 23232050
Alignment:
| Q |
6 |
tggacatcatcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
105 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||||||| ||||| ||| ||||||| || | |||||| ||| | |||||||||||||||||||| ||| | |
|
|
| T |
23232261 |
tggacatcttcatctccttaaaccacttattcatcatgccttccgcgacctctctgagcgatatggacctcttatatcccttcgacttggctctgctcga |
23232162 |
T |
|
| Q |
106 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
205 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23232161 |
tttatagttgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
23232062 |
T |
|
| Q |
206 |
cctatgatgatg |
217 |
Q |
| |
|
|||||||||||| |
|
|
| T |
23232061 |
cctatgatgatg |
23232050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 23224924 - 23224717
Alignment:
| Q |
10 |
catcatcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaattta |
109 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||||| ||||||||| ||||||| |||| |||||| || | ||||||||||||||||| || || ||||| |
|
|
| T |
23224924 |
catcttcatctcctcaaacccctcgttcatcaagcctttcgcgacctctctgatcgatatggaccccttatatcccttcgacttggttctgttccattta |
23224825 |
T |
|
| Q |
110 |
tcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttgccta |
209 |
Q |
| |
|
|| |||||| | ||||||||||| |||||||||||||| ||| | ||||| ||||||| ||||||||||| ||| ||||||||| ||||| ||| |
|
|
| T |
23224824 |
tcgttgttagttccccatcactcgcaaaagagtttctcaaaacaaacgagcttgtttattcttcccgtaaaatgaacattgccatcaacacagttgtcta |
23224725 |
T |
|
| Q |
210 |
tgatgatg |
217 |
Q |
| |
|
||||||| |
|
|
| T |
23224724 |
cgatgatg |
23224717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University