View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17210_low_31 (Length: 227)
Name: NF17210_low_31
Description: NF17210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17210_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 40142476 - 40142279
Alignment:
| Q |
13 |
cagagatcaagagtatggagacaaaccaatttgatccttttcagaaaccaaggacctaaagcaataattatcctattagaaaccagggaccaaaaccaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40142476 |
cagagatcaagagtatggagacaaaccaatttgatccttttcagaaaccaaggacctaaagcaataattatcctattagaaaccagggaccaaaaccaat |
40142377 |
T |
|
| Q |
113 |
tgttatcctatttttcatgaatctgtttccaaattgttttgttcatcaatcaattttcctccccccatcagaattgcagtggtagtctgaactctgtg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40142376 |
tgttatcctatttttcatgaatctgtttccaaattgttttgttcatcaatcaattttcctccccctatcagaattgcagtggtagtctgaactctgtg |
40142279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University