View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17210_low_33 (Length: 219)
Name: NF17210_low_33
Description: NF17210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17210_low_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 46790171 - 46790355
Alignment:
| Q |
12 |
agaacctgtggttatcacatgagtggtgatttttgttgggacttcacgggggtatttcttaggtaagcctctaatgcttctgatgaagtcaaaagctgct |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46790171 |
agaaactgtggttatcacatgagtggtgatttttgttgggacttcatgggggtatttcttaggtaagcctctaatgcttctgatgaagtcaaaagctgct |
46790270 |
T |
|
| Q |
112 |
tgtgtgtcattatagtttggaagatgaggtaatgaaggagttgaaagtggtgtatgaatcccactgtattgtactataccagtgg |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
46790271 |
tgtgtgtcattatagtttggaagatgaggtaatgaaggagttgaaagtggtgtatgactccaactgtattgtactataccagtgg |
46790355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 74 - 196
Target Start/End: Original strand, 46782788 - 46782910
Alignment:
| Q |
74 |
gtaagcctctaatgcttctgatgaagtcaaaagctgcttgtgtgtcattatagtttggaagatgaggtaatgaaggagttgaaagtggtgtatgaatccc |
173 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||| |||||||| ||| |||| | || | |
|
|
| T |
46782788 |
gtaagccgctaatgcttctgatgaagttaaaagctgcttgtgtgtcattatagttgggaagaaaaggtaatgaagaagttgaaattggagtataactctc |
46782887 |
T |
|
| Q |
174 |
actgtattgtactataccagtgg |
196 |
Q |
| |
|
|||||||| |||||| |||||| |
|
|
| T |
46782888 |
tctgtattgcactatagcagtgg |
46782910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University