View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17210_low_36 (Length: 210)
Name: NF17210_low_36
Description: NF17210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17210_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 21546169 - 21546336
Alignment:
| Q |
19 |
tcatcaacctagtgaaaatcaatagtgaaggaacaatttctcttatcaattgtgacaccaaaacagcatgagacatgccatttgnnnnnnnnnnnnnnnc |
118 |
Q |
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| T |
21546169 |
tcatcaacctagtgaaaatcaatagtgaaggaacaatttctcttatcaattgagacaccaaaacagcatgacacatgccatttg--aaaaaaaaaaaaac |
21546266 |
T |
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| Q |
119 |
aattataggaaatcgattgtaaga-caaaggt--tacaataatggccttctacattcactcaataatgat |
185 |
Q |
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| T |
21546267 |
aattatagaaaatcgattgcaagatcaaaggttatacaataatggccttccacattcactcaataatgat |
21546336 |
T |
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Target: chr8; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 7498637 - 7498563
Alignment:
| Q |
28 |
tagtgaaaatcaatagtgaaggaacaatttctcttatcaattgtgacaccaaaacagcatgagacatgccatttg |
102 |
Q |
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| T |
7498637 |
tagtgaaaatgaatagcaaagaaacaatttctcttatcaattgtgacaccaaaacagcatgacacatgccatttg |
7498563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 37685124 - 37685198
Alignment:
| Q |
28 |
tagtgaaaatcaatagtgaaggaacaatttctcttatcaattgtgacaccaaaacagcatgagacatgccatttg |
102 |
Q |
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| T |
37685124 |
tagtgaaaatgaatagcaaagaaacaatttcttttatcaattgtgacaccaaaacagcatgacacatgccatttg |
37685198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 46885186 - 46885136
Alignment:
| Q |
52 |
caatttctcttatcaattgtgacaccaaaacagcatgagacatgccatttg |
102 |
Q |
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| T |
46885186 |
caatttctcttatcaattgtgacaccaaaactacatgacacatgccatttg |
46885136 |
T |
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