View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17210_low_4 (Length: 634)
Name: NF17210_low_4
Description: NF17210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17210_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 13 - 353
Target Start/End: Complemental strand, 26587254 - 26586916
Alignment:
| Q |
13 |
cataggagagagaatgaatggtggtgaatactactagagttaaattaagtgtaaatttataccagtattgagtttgacataatcacgatgatatatcagg |
112 |
Q |
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| T |
26587254 |
cataggagagagaatgaatggtggtgaatactactagagttaaattaagtgtaaatttataccagcattgagtttaacaaaatcacgatgatat--cagg |
26587157 |
T |
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| Q |
113 |
attttgttaacaccttaagatgtagtttttgtcaaaattgtgataggtcatcgtgacttgctgttcacaccgtgaacctaaatataaattaaacttgttt |
212 |
Q |
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| T |
26587156 |
attttgttaacaccttaagatgtagtttttgttaaaattgtgataggtcatcgtgacttgctgtttacaccgtgaacctaaatataaattaaacttgttc |
26587057 |
T |
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| Q |
213 |
ttaaatttgtagtccagtgatcagagtgagatgatgaaatattatgtaatagttaggtttatgatatgatatctaatcggctaaacgaattaaccattaa |
312 |
Q |
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| T |
26587056 |
tcaaatttgtagtccattgatcagagtgagatgatgacatattatgtaatagttaggtttataatatgatatctaatcggctaaacgaattaaccattaa |
26586957 |
T |
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| Q |
313 |
catttgtttatatgtaatgttaagttgagtttgaaaaatgt |
353 |
Q |
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| T |
26586956 |
catttgtttatatgtaatgttaagttgagtttgaaaaatgt |
26586916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 463 - 619
Target Start/End: Complemental strand, 26586806 - 26586650
Alignment:
| Q |
463 |
gggcacctgaaacagatgtggaaaataaaaagttttgagaaatgataaactagtgcacgtgtgtttttatcattgcttatagattgaggccagcagattc |
562 |
Q |
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| T |
26586806 |
gggcacctgaaacagatgtggaaaataaaaagttttgagaaatgataaactagtgcacgtgtgtttttatcattgcttatagattgaggccagcagattc |
26586707 |
T |
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| Q |
563 |
agaaaatgctttggggaccatatgaatagtgctgaatttgaagagttagatcttctt |
619 |
Q |
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| T |
26586706 |
agaaaatgctttggggaccatatgaatagtgctgaatttgaagagttagatcttctt |
26586650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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