View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17210_low_7 (Length: 482)
Name: NF17210_low_7
Description: NF17210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17210_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 236 - 461
Target Start/End: Original strand, 27255880 - 27256105
Alignment:
| Q |
236 |
aggaagagaaagtaaaattcataccactgaaaatcaaagcttcgcatgtaaccgaaagtgaaacaatattgcttgctaacttcttgattttgaaggtgtt |
335 |
Q |
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| T |
27255880 |
aggaagagaaagtaaaattcataccactaaaaatcaaagcttcgcgtgtaaccgaaagtgaaacaatattgcttgctaacttcttgatattgaaggtgtt |
27255979 |
T |
|
| Q |
336 |
atgtgactgtagaaaaacaaactttagaagcattagcatttgaaaaacaaactaagaacaaatattttgatgaaaaatgagagttagttatcaaatattt |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27255980 |
atgtgactgtagaaaaacaaactttagaagcattagcatttgaaaaacaaactaagaacaaatattttgatgaaaaatgagagttagttatcaaatattt |
27256079 |
T |
|
| Q |
436 |
tggtagaagtacactgactaagaact |
461 |
Q |
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| T |
27256080 |
tggtagaagtacacagactaagaact |
27256105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 27255629 - 27255840
Alignment:
| Q |
9 |
atgctaacacaaaataatgacctaaaggccaaaagatacattatgaatcaaatatcaaaactgacatcatagagcataaagacctaatcatatactatag |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27255629 |
atgctaacacaaaataatgacctaaaggccaaaagatacattatgaatcaaatatcaaaactgacatcatagagcataaagacctaatcatatactatag |
27255728 |
T |
|
| Q |
109 |
gattctatcattctaaaatcacttcataaacaatgattttacaattatagacaacatttcatgctctatatttgcgttaaga-ggttataatcgtattcg |
207 |
Q |
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| T |
27255729 |
gattctatcattctaaaatcacttcataaacaatgattttacaattatagacaacatttcatgctctatatttgcgttaagagggttataatcgtattcg |
27255828 |
T |
|
| Q |
208 |
catgtataatgc |
219 |
Q |
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|||||||||||| |
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| T |
27255829 |
catgtataatgc |
27255840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 236 - 467
Target Start/End: Original strand, 21199860 - 21200080
Alignment:
| Q |
236 |
aggaagagaaagtaaaattcataccactgaaaatcaaagcttcgcatgtaaccgaaagtgaaacaatattgcttgctaacttcttgattttgaaggtgtt |
335 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21199860 |
aggaggagaaagtaaaattcataccactaaaaatcaaagcttcgcatgtaaccgaaagtgaaacaatattgcttg-----------attttgaaggtgtt |
21199948 |
T |
|
| Q |
336 |
atgtgactgtagaaaaacaaactttagaagcattagcatttgaaaaacaaactaagaacaaatattttgatgaaaaatgagagttagttatcaaatattt |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21199949 |
atgtgactgtagaaaaacaaactttagaagcattagcatttgaaaaacaaactaagaacaaatattttgatgaaaaatgagagttagttatcaaatattt |
21200048 |
T |
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| Q |
436 |
tggtagaagtacactgactaagaacttaccag |
467 |
Q |
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|||||||||||||| ||||||||||||||||| |
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| T |
21200049 |
tggtagaagtacacagactaagaacttaccag |
21200080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 86 - 219
Target Start/End: Original strand, 21199686 - 21199820
Alignment:
| Q |
86 |
aaagacctaatcatatactataggattctatcattctaaaatcacttcataaacaatgattttacaattatagacaacatttcatgctctatatttgcgt |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21199686 |
aaagacctaatcatatactataggattctatcattctaaaatcacttcataaacaatgattttacaattatagacaacatttcatgctctatatttgcgt |
21199785 |
T |
|
| Q |
186 |
taaga-ggttataatcgtattcgcatgtataatgc |
219 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
21199786 |
taagagggttataatcgtattcgcatgtataatgc |
21199820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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