View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17210_low_8 (Length: 425)

Name: NF17210_low_8
Description: NF17210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17210_low_8
NF17210_low_8
[»] scaffold0016 (1 HSPs)
scaffold0016 (198-368)||(49922-50092)
[»] chr3 (38 HSPs)
chr3 (71-219)||(45095669-45095817)
chr3 (117-206)||(42791448-42791537)
chr3 (117-206)||(40049026-40049115)
chr3 (117-206)||(44648322-44648411)
chr3 (114-206)||(25061845-25061937)
chr3 (117-213)||(16240713-16240808)
chr3 (145-221)||(43580617-43580692)
chr3 (116-175)||(2458191-2458250)
chr3 (140-206)||(27483128-27483194)
chr3 (117-206)||(4476274-4476363)
chr3 (117-206)||(31290886-31290975)
chr3 (165-206)||(38165621-38165662)
chr3 (117-206)||(42740374-42740463)
chr3 (117-221)||(44854453-44854554)
chr3 (1-46)||(45095905-45095950)
chr3 (115-206)||(27027889-27027977)
chr3 (115-175)||(41850564-41850624)
chr3 (154-213)||(46362959-46363017)
chr3 (124-206)||(2567931-2568013)
chr3 (117-219)||(4392035-4392136)
chr3 (1-35)||(45095877-45095911)
chr3 (146-207)||(1340870-1340931)
chr3 (157-206)||(5244736-5244785)
chr3 (152-221)||(43599495-43599563)
chr3 (117-206)||(43736783-43736871)
chr3 (146-206)||(83447-83507)
chr3 (117-221)||(647504-647607)
chr3 (146-206)||(35099316-35099376)
chr3 (116-206)||(15514646-15514736)
chr3 (153-206)||(27039480-27039531)
chr3 (117-175)||(36460988-36461046)
chr3 (177-218)||(22731072-22731112)
chr3 (165-206)||(38457612-38457653)
chr3 (124-213)||(42857010-42857098)
chr3 (177-221)||(2662464-2662507)
chr3 (165-221)||(9167649-9167704)
chr3 (117-169)||(47138154-47138206)
chr3 (117-189)||(51398179-51398251)
[»] chr5 (25 HSPs)
chr5 (117-221)||(36660563-36660666)
chr5 (116-221)||(166560-166664)
chr5 (117-206)||(4371502-4371591)
chr5 (124-221)||(12167529-12167625)
chr5 (117-206)||(4751442-4751531)
chr5 (124-221)||(36783493-36783589)
chr5 (116-179)||(29807225-29807288)
chr5 (116-179)||(42103974-42104037)
chr5 (153-206)||(4742214-4742267)
chr5 (117-206)||(33693882-33693971)
chr5 (146-206)||(12992205-12992265)
chr5 (146-221)||(43257801-43257875)
chr5 (124-206)||(38982073-38982155)
chr5 (116-185)||(21375561-21375630)
chr5 (146-206)||(13066856-13066916)
chr5 (114-206)||(24436449-24436541)
chr5 (117-185)||(42661852-42661920)
chr5 (162-221)||(17674338-17674396)
chr5 (116-179)||(21375480-21375543)
chr5 (165-207)||(1513130-1513172)
chr5 (117-175)||(2729698-2729756)
chr5 (117-175)||(26660937-26660995)
chr5 (117-175)||(26932530-26932588)
chr5 (117-206)||(14979963-14980052)
chr5 (162-206)||(31557297-31557341)
[»] scaffold0072 (1 HSPs)
scaffold0072 (117-206)||(11994-12083)
[»] chr2 (19 HSPs)
chr2 (117-206)||(40987194-40987283)
chr2 (124-221)||(14378167-14378263)
chr2 (124-221)||(34225887-34225983)
chr2 (140-221)||(36360310-36360390)
chr2 (117-206)||(42970040-42970129)
chr2 (153-221)||(29795147-29795214)
chr2 (117-179)||(4133201-4133263)
chr2 (116-185)||(30855278-30855347)
chr2 (117-219)||(4536701-4536802)
chr2 (117-179)||(25383397-25383459)
chr2 (165-206)||(6592107-6592148)
chr2 (116-217)||(24775330-24775430)
chr2 (117-179)||(441143-441205)
chr2 (124-206)||(7743552-7743634)
chr2 (117-179)||(25332750-25332812)
chr2 (117-206)||(44228617-44228707)
chr2 (146-206)||(1360319-1360379)
chr2 (157-221)||(4840679-4840742)
chr2 (165-205)||(14511602-14511642)
[»] chr4 (31 HSPs)
chr4 (117-217)||(29840193-29840292)
chr4 (116-206)||(30492868-30492958)
chr4 (117-206)||(22212489-22212578)
chr4 (124-206)||(32140798-32140880)
chr4 (117-206)||(36805366-36805454)
chr4 (117-206)||(42672537-42672626)
chr4 (115-179)||(41920223-41920287)
chr4 (124-219)||(32140908-32141002)
chr4 (117-179)||(2728314-2728376)
chr4 (119-189)||(34534008-34534078)
chr4 (117-179)||(56373491-56373553)
chr4 (140-221)||(34360139-34360219)
chr4 (165-206)||(45049847-45049888)
chr4 (165-206)||(51906274-51906315)
chr4 (115-175)||(37654593-37654653)
chr4 (117-185)||(39984990-39985058)
chr4 (170-221)||(37445794-37445844)
chr4 (124-179)||(52957713-52957768)
chr4 (117-206)||(56556194-56556280)
chr4 (117-179)||(28116422-28116484)
chr4 (165-215)||(38692521-38692570)
chr4 (124-185)||(34316393-34316454)
chr4 (165-206)||(45520421-45520462)
chr4 (165-206)||(51737285-51737326)
chr4 (165-206)||(54092097-54092138)
chr4 (177-221)||(15501129-15501172)
chr4 (117-189)||(19878817-19878889)
chr4 (127-179)||(27653853-27653905)
chr4 (146-206)||(30022215-30022275)
chr4 (153-221)||(34096150-34096217)
chr4 (118-174)||(49080394-49080450)
[»] chr1 (31 HSPs)
chr1 (117-221)||(50349769-50349872)
chr1 (140-221)||(37437338-37437419)
chr1 (117-221)||(84430-84533)
chr1 (117-206)||(48259775-48259864)
chr1 (117-221)||(28751320-28751423)
chr1 (124-219)||(6377205-6377299)
chr1 (120-203)||(30006284-30006367)
chr1 (117-206)||(45749411-45749500)
chr1 (165-221)||(24040984-24041039)
chr1 (154-206)||(43105551-43105603)
chr1 (117-182)||(49426329-49426394)
chr1 (130-206)||(6332318-6332394)
chr1 (153-221)||(12002383-12002450)
chr1 (125-221)||(17919741-17919835)
chr1 (124-221)||(48319924-48320016)
chr1 (124-179)||(32806855-32806910)
chr1 (165-219)||(5317537-5317590)
chr1 (155-221)||(40060856-40060921)
chr1 (117-175)||(44108784-44108842)
chr1 (146-218)||(40719155-40719226)
chr1 (124-179)||(5854143-5854198)
chr1 (116-179)||(11134371-11134434)
chr1 (146-205)||(15698691-15698750)
chr1 (117-175)||(5463758-5463816)
chr1 (117-219)||(12851871-12851972)
chr1 (124-194)||(43755190-43755260)
chr1 (153-206)||(15647021-15647074)
chr1 (165-206)||(43929835-43929876)
chr1 (165-213)||(2245933-2245980)
chr1 (117-213)||(45377071-45377166)
chr1 (117-185)||(49468621-49468689)
[»] chr8 (21 HSPs)
chr8 (117-206)||(38328967-38329056)
chr8 (110-221)||(32326630-32326740)
chr8 (124-206)||(2803174-2803256)
chr8 (116-221)||(36915502-36915606)
chr8 (117-206)||(41414983-41415072)
chr8 (117-179)||(39463436-39463498)
chr8 (117-206)||(9022547-9022636)
chr8 (117-219)||(8382399-8382500)
chr8 (140-206)||(45187231-45187297)
chr8 (146-219)||(2812915-2812987)
chr8 (117-206)||(27109732-27109821)
chr8 (127-206)||(22601286-22601365)
chr8 (172-206)||(6839358-6839392)
chr8 (165-215)||(37185622-37185671)
chr8 (165-206)||(156371-156412)
chr8 (177-218)||(5588440-5588480)
chr8 (153-206)||(8106836-8106889)
chr8 (124-185)||(17921130-17921191)
chr8 (127-204)||(32661449-32661526)
chr8 (146-219)||(39970455-39970527)
chr8 (117-185)||(34461494-34461562)
[»] chr7 (16 HSPs)
chr7 (124-221)||(33056203-33056299)
chr7 (117-221)||(42259461-42259564)
chr7 (117-219)||(40298978-40299079)
chr7 (117-179)||(1742170-1742232)
chr7 (128-206)||(42121694-42121772)
chr7 (153-206)||(17869389-17869442)
chr7 (117-206)||(18733586-18733675)
chr7 (153-218)||(32275336-32275400)
chr7 (117-192)||(40207299-40207373)
chr7 (140-206)||(19920218-19920284)
chr7 (117-179)||(27947411-27947473)
chr7 (127-189)||(31416672-31416734)
chr7 (147-221)||(47272289-47272362)
chr7 (165-202)||(22627314-22627351)
chr7 (117-185)||(19906587-19906655)
chr7 (153-201)||(48838628-48838676)
[»] scaffold0189 (1 HSPs)
scaffold0189 (146-217)||(13009-13079)
[»] scaffold0758 (1 HSPs)
scaffold0758 (117-175)||(6239-6297)
[»] chr6 (7 HSPs)
chr6 (148-221)||(12828624-12828696)
chr6 (124-206)||(30627233-30627315)
chr6 (153-206)||(8052486-8052539)
chr6 (117-206)||(31275553-31275642)
chr6 (124-179)||(1135104-1135159)
chr6 (162-221)||(23936540-23936598)
chr6 (117-179)||(29713318-29713380)
[»] scaffold0060 (1 HSPs)
scaffold0060 (148-206)||(31695-31753)
[»] scaffold0886 (1 HSPs)
scaffold0886 (162-206)||(4065-4109)
[»] scaffold0110 (1 HSPs)
scaffold0110 (117-185)||(24652-24720)
[»] scaffold0048 (1 HSPs)
scaffold0048 (131-179)||(62812-62860)


Alignment Details
Target: scaffold0016 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 198 - 368
Target Start/End: Complemental strand, 50092 - 49922
Alignment:
Q  198 aacactttttactaaaatgcccttctttggagccaaaatgttggttttttcaaaattcaaaatctgtcttctgcttttatcaggagagatgcacactaat 297  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50092 aacactttttactaaaatgcccttctttgaagccaaaatgctggttttttcaaaattcaaaatctgtcttctgcttttatcagtagagatgcacactaat 49993  T
Q  298 cagaaataagcacaacaaaataaaccaatagcacaaaaagcttcacgtgaccatccctctctcataataca 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49992 cagaaataagcacaacaaaataaaccaatagcacaaaaagcttcacgtgaccatccctctctcataataca 49922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 5e-69; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 71 - 219
Target Start/End: Complemental strand, 45095817 - 45095669
Alignment:
Q  71 atattcttcatctttcaatagtatcatccatatacgttgaaatttctactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaag 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||    
T  45095817 atattcttcatctttcaatagtatcatccatatacgttgaaatttctactccctccgtttcaaaatgattgtcgctttagctaattgcacgcatattaag 45095718  T
Q  171 gaatggaatgaaataatcattaaacataacactttttactaaaatgccc 219  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45095717 gaatggaatgaaataatcattaaacataacacattttactaaaatgccc 45095669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 42791537 - 42791448
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||||||||||||| | ||||| |||||| ||||||||||||||||||||||| |||||||||||||||| |||||| ||||||    
T  42791537 tactccatccgtttcaaaatgagtgtcattttagccaattgcacgcatattaaggaatgtaatgaaataatcattagacataatactttt 42791448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 40049115 - 40049026
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||||||| ||||||| |||| ||||||||| |||||| |  |||||||||||||||||||||||||||| |||||||||||||    
T  40049115 tactccctccgttttaaaattagtgtcgctttagctatttgcacacgaattaaggaatggaatgaaataatcattagacataacactttt 40049026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 44648322 - 44648411
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||||||||||||| | ||||  |||||| |||||||| || ||||||||||| |||||||||||||||| |||||||||||||    
T  44648322 tactccctccgtttcaaaatgagtgtcgttttagccaattgcacacagattaaggaatgaaatgaaataatcattagacataacactttt 44648411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 25061937 - 25061845
Alignment:
Q  114 ttctactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||||||| ||||||| ||||| | ||||  ||||||  ||||||| |||||||||||||| |||||||||||||||| |||||||||||||    
T  25061937 ttctactccatccgtttaaaaatgagtgtcgttttagccgattgcacacatattaaggaatgaaatgaaataatcattagacataacactttt 25061845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 16240808 - 16240713
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaa 213  Q
    |||||| ||||||||||||| | ||||  ||||||  ||||||| || |||| |||||| |||||||||||||||| |||||||| |||||||||||    
T  16240808 tactccatccgtttcaaaatgagtgtcgttttagcctattgcacacaaattagggaatgaaatgaaataatcattagacataaca-tttttactaaa 16240713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 43580692 - 43580617
Alignment:
Q  145 ctttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    ||||||| |||||||| || |||||||||| ||||||||||||||||| | |||||| ||||||||||| |||||||    
T  43580692 ctttagccaattgcacacagattaaggaatagaatgaaataatcattacatataaca-tttttactaaactgccctt 43580617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 2458250 - 2458191
Alignment:
Q  116 ctactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatg 175  Q
    ||||||| ||||||||||||| | |||||||||||| |||||||| ||||||||||||||    
T  2458250 ctactccctccgtttcaaaatgagtgtcactttagccaattgcacacatattaaggaatg 2458191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 27483128 - 27483194
Alignment:
Q  140 tgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||| |||||||  ||||||| || ||||||||||| |||||||||||||||| |||||||||||||    
T  27483128 tgtcgctttagcccattgcacacaaattaaggaatgaaatgaaataatcattagacataacactttt 27483194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 4476274 - 4476363
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||||||||||| ||||| | ||||  |||||| |||| |||  ||||||| ||||| |||||||||||||||| || ||||||||||    
T  4476274 tactccttccgttttaaaataagtgtcgttttagccaattacacatatattaaagaatgcaatgaaataatcattagacgtaacactttt 4476363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 31290886 - 31290975
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||||||| ||||| | ||||  |||||| |||| ||| || ||||||||||| ||||||||||| |||| |||||||||||||    
T  31290886 tactccctccgttttaaaatgagtgtcgttttagccaattacacacagattaaggaatgaaatgaaataattattagacataacactttt 31290975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 38165621 - 38165662
Alignment:
Q  165 attaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  38165621 attaaggaatgtaatgaaataatcattaaacataacactttt 38165662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 42740463 - 42740374
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||||||||||| ||||| | ||||  |||||| |||| |||  ||||||| ||||| |||||||||||||||| || ||||||||||    
T  42740463 tactccttccgttttaaaataagtgtcgttttagccaattacacatatattaaagaatgcaatgaaataatcattagacgtaacactttt 42740374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 221
Target Start/End: Complemental strand, 44854554 - 44854453
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatg 216  Q
    |||||| ||||||||||||| ||||||  |||||| ||||||||  | ||||| |||| ||||||||||||||||| ||  ||||| |||||||||| ||    
T  44854554 tactccatccgtttcaaaatgattgtcgttttagccaattgcacatagattaatgaattgaatgaaataatcattagac--aacac-ttttactaaactg 44854458  T
Q  217 ccctt 221  Q
    |||||    
T  44854457 ccctt 44854453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 45095950 - 45095905
Alignment:
Q  1 tctaataagaaaaatctaaaatataaatatgtggaaatttctaata 46  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||    
T  45095950 tctaataagaaaaatctaaaatatgcatatgtggaaatttctaata 45095905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 27027977 - 27027889
Alignment:
Q  115 tctactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||||| ||||||||||| | | ||||  |||| | |||||||| ||||||||| |||||||||||  ||||||||||||||||||||||    
T  27027977 tctactccatccgtttcaaa-taagtgtcgttttaaccaattgcacacatattaagtaatggaatgaa--aatcattaaacataacactttt 27027889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 41850624 - 41850564
Alignment:
Q  115 tctactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatg 175  Q
    |||||||| ||||||||||||| | || | |||||||||||||||| ||||||||||||||    
T  41850624 tctactccatccgtttcaaaatgagtggcgctttagctaattgcacacatattaaggaatg 41850564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 46362959 - 46363017
Alignment:
Q  154 attgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaa 213  Q
    ||||||| ||||||||||||| ||||||||||||||||| || ||||| |||||||||||    
T  46362959 attgcacacatattaaggaattgaatgaaataatcattagacctaaca-tttttactaaa 46363017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 2567931 - 2568013
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||||| ||||| | ||||  |||||| ||||||||  | |||||||||| ||||||||||||||||| | |||||||||||    
T  2567931 tccgttttaaaatgaatgtcgttttagccaattgcacatagattaaggaattgaatgaaataatcattagatataacactttt 2568013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 4392136 - 4392035
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatg 216  Q
    |||||| ||||||||||||| | ||||  ||| || |||||||  || |||||| |||| ||||||||||| |||| ||||||||| |||||||||| ||    
T  4392136 tactccctccgtttcaaaatgagtgtcgttttggccaattgcatacaaattaagaaatgaaatgaaataattattagacataacac-ttttactaaactg 4392038  T
Q  217 ccc 219  Q
    |||    
T  4392037 ccc 4392035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 45095911 - 45095877
Alignment:
Q  1 tctaataagaaaaatctaaaatataaatatgtgga 35  Q
    |||||||||||||||||||||||||||||||||||    
T  45095911 tctaataagaaaaatctaaaatataaatatgtgga 45095877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 1340870 - 1340931
Alignment:
Q  146 tttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacacttttt 207  Q
    |||||| ||||||||  | ||||| ||||||||||||||||| |||| ||||||||||||||    
T  1340870 tttagcaaattgcacatagattaaagaatggaatgaaataataattagacataacacttttt 1340931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 5244785 - 5244736
Alignment:
Q  157 gcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||| ||||||||| ||| ||||||||||||||||| |||||||||||||    
T  5244785 gcacacatattaagaaattgaatgaaataatcattagacataacactttt 5244736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 43599495 - 43599563
Alignment:
Q  152 taattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    |||||||||  | ||||||||||| |||||||||||||||| |||||| || |||||||||| |||||||    
T  43599495 taattgcacataaattaaggaatgaaatgaaataatcattagacataatac-ttttactaaactgccctt 43599563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 43736783 - 43736871
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||||||||||||| | |||| ||||||| ||||||||  | ||| ||| ||| |||||||||||||||| | |||||||||||    
T  43736783 tactccatccgtttcaaaatgagtgtcgctttagccaattgcac-aaaatttagggatgaaatgaaataatcattagatataacactttt 43736871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 83507 - 83447
Alignment:
Q  146 tttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| |||||||| || ||||||||||| |||||| ||||||||| ||| |||||||||    
T  83507 tttagccaattgcacacaaattaaggaatgaaatgaattaatcattagacacaacactttt 83447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 647504 - 647607
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatg 216  Q
    |||||| || |||||||||| | ||||  |||| | |||||||| || |||||| |||| |||||||||||||||| | ||||||  |||||||||| ||    
T  647504 tactccctcggtttcaaaataagtgtcgttttacccaattgcacacagattaagaaatgaaatgaaataatcattagatataaca-gttttactaaactg 647602  T
Q  217 ccctt 221  Q
    |||||    
T  647603 ccctt 647607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 35099316 - 35099376
Alignment:
Q  146 tttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| |||||||| || |||||| || | |||||||||||||||| |||||||||||||    
T  35099316 tttagcaaattgcacacaaattaagaaacgaaatgaaataatcattagacataacactttt 35099376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 15514646 - 15514736
Alignment:
Q  116 ctactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||||| ||||||| ||||| | ||||  |||||  ||||||||  | | ||||||||| |||||||||||||||| |||||||| ||||    
T  15514646 ctactccatccgttttaaaatgaatgtcgttttagtcaattgcacataaaataaggaatgtaatgaaataatcattagacataacaatttt 15514736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 27039531 - 27039480
Alignment:
Q  153 aattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||||| ||||||||| |||||||||||  |||||||||| |||||||||||    
T  27039531 aattgcacacatattaagtaatggaatgaa--aatcattaaatataacactttt 27039480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 36461046 - 36460988
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatg 175  Q
    |||||||||||||| ||||| | |||| |||||||||| || | |||||||||||||||    
T  36461046 tactccttccgttttaaaatgagtgtcgctttagctaaatgtaggcatattaaggaatg 36460988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 22731112 - 22731072
Alignment:
Q  177 aatgaaataatcattaaacataacactttttactaaaatgcc 218  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  22731112 aatgaaataatcattaaacataaca-tttttactaaactgcc 22731072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 38457653 - 38457612
Alignment:
Q  165 attaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||| ||||||||||||||||| |||||||||||||    
T  38457653 attaagaaattgaatgaaataatcattacacataacactttt 38457612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 213
Target Start/End: Original strand, 42857010 - 42857098
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaa 213  Q
    ||||||| ||||| | ||||  |||||  |||| ||| || ||||||||||  |||||||||||||||| |||||||| |||||||||||    
T  42857010 tccgttttaaaatgagtgtcgttttaggcaattacacacagattaaggaatcaaatgaaataatcattagacataaca-tttttactaaa 42857098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 2662464 - 2662507
Alignment:
Q  177 aatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    |||||||||||||||| ||||||||| |||||||||| |||||||    
T  2662464 aatgaaataatcattagacataacac-ttttactaaattgccctt 2662507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 9167649 - 9167704
Alignment:
Q  165 attaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    ||||||||| | |||||||||||||||  |||||||| ||||||||||| |||||||    
T  9167649 attaaggaaggtaatgaaataatcatttcacataaca-tttttactaaactgccctt 9167704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 47138206 - 47138154
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaa 169  Q
    |||||| ||||||||||||| | |||||||||||  |||||||| ||||||||    
T  47138206 tactccatccgtttcaaaatgagtgtcactttagtcaattgcacacatattaa 47138154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 51398251 - 51398179
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatca 189  Q
    |||||| ||||||||||||| | |||| ||||||| |||||||| || |||||| |||| ||| || ||||||    
T  51398251 tactccctccgtttcaaaatgagtgtcgctttagccaattgcacacagattaagaaatgaaataaagtaatca 51398179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 117 - 221
Target Start/End: Complemental strand, 36660666 - 36660563
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatg 216  Q
    |||||| || |||||||||| | |||| |||||||||||||||| || ||||||||||| |||||||||||||||| ||||||||| |||||||||||||    
T  36660666 tactccctctgtttcaaaatgagtgtcgctttagctaattgcacacagattaaggaatgaaatgaaataatcattagacataacac-ttttactaaaatg 36660568  T
Q  217 ccctt 221  Q
     ||||    
T  36660567 tcctt 36660563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 166560 - 166664
Alignment:
Q  116 ctactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaat 215  Q
    ||||||| ||||||||||||| | |||| | ||||| |||||||| || ||||||||||| |||||||||||||||| | ||||||| |||||||||| |    
T  166560 ctactccctccgtttcaaaatgagtgtcgcgttagccaattgcacacagattaaggaatgaaatgaaataatcattagaaataacac-ttttactaaact 166658  T
Q  216 gccctt 221  Q
    ||||||    
T  166659 gccctt 166664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 4371591 - 4371502
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||||||||||||| | ||||  |||| |||||||||| || |||||||||||||||||||||||||||| ||||| |||||||    
T  4371591 tactccctccgtttcaaaatgagtgtcgttttaactaattgcacacaaattaaggaatggaatgaaataatcattagacatagcactttt 4371502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 12167529 - 12167625
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    ||||||||||||| | |||| |||||||||||||||| || |||||| ||| ||||||||||||||||| ||| ||||| |||||||||| |||||||    
T  12167529 tccgtttcaaaatgagtgtcgctttagctaattgcacacaaattaagaaattgaatgaaataatcattagacaaaacac-ttttactaaactgccctt 12167625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 4751442 - 4751531
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||| ||| |||| ||||| | ||||  |||||| |||||||| |||||||||||||| |||||||||||||||| |||||||||||||    
T  4751442 tactctttctgttttaaaatgagtgtcgttttagccaattgcacacatattaaggaatgaaatgaaataatcattagacataacactttt 4751531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 36783589 - 36783493
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    ||||||||||||| | | || ||||||| |||||||| || ||||||  ||| |||||||||||||||| |||||||| ||||||||||| |||||||    
T  36783589 tccgtttcaaaatgagtatcgctttagccaattgcacacagattaagagatgaaatgaaataatcattagacataaca-tttttactaaattgccctt 36783493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 29807225 - 29807288
Alignment:
Q  116 ctactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    ||||||| ||||||||||||| | |||| ||||||| ||| |||||||||||||||||||||||    
T  29807225 ctactccctccgtttcaaaataagtgtcgctttagccaatagcacgcatattaaggaatggaat 29807288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 42103974 - 42104037
Alignment:
Q  116 ctactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    ||||||| ||||||||||||| | |||| ||||||| |||||||| ||||||||||||||||||    
T  42103974 ctactccctccgtttcaaaatgagtgtcgctttagccaattgcacacatattaaggaatggaat 42104037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 4742214 - 4742267
Alignment:
Q  153 aattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||||| |||||||||||||| |||||||||||||| | |||||||||||||    
T  4742214 aattgcacacatattaaggaatgaaatgaaataatcatcagacataacactttt 4742267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 33693971 - 33693882
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||||||||||| ||||| | ||||  |||||| |||| |||  ||||||| ||||| |||||||||||||||| || ||||||||||    
T  33693971 tactccttccgttttaaaataagtgtcgttttagccaattacacatatattaaagaatgcaatgaaataatcattagacgtaacactttt 33693882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 12992265 - 12992205
Alignment:
Q  146 tttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| |||||||  || ||||||||||| |||||||||||||||| |||||||||||||    
T  12992265 tttagccaattgcatacaaattaaggaatgaaatgaaataatcattagacataacactttt 12992205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 43257801 - 43257875
Alignment:
Q  146 tttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    |||||| |||||||| || ||||| ||||| |||||||||||||||| ||||||||| || ||||||| |||||||    
T  43257801 tttagccaattgcacacagattaaagaatgaaatgaaataatcattagacataacac-ttatactaaactgccctt 43257875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 38982073 - 38982155
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||||||||||| | ||||  |||||| |||||||| || ||||||||||| |||||||||||| | | || ||||||||||    
T  38982073 tccgtttcaaaatgaatgtcgttttagccaattgcacacaaattaaggaatgaaatgaaataatcttaagacgtaacactttt 38982155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 21375561 - 21375630
Alignment:
Q  116 ctactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaata 185  Q
    |||||| |||||||||||||| | |||||||||||| ||||||||  | ||||| ||||||||| |||||    
T  21375561 ctactcattccgtttcaaaatgagtgtcactttagccaattgcacaaagattaaagaatggaataaaata 21375630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 13066916 - 13066856
Alignment:
Q  146 tttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| |||||||  || ||||||||||| |||||||||||||||| ||| |||||||||    
T  13066916 tttagccaattgcatacaaattaaggaatgaaatgaaataatcattagacacaacactttt 13066856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 24436449 - 24436541
Alignment:
Q  114 ttctactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||| |||| ||||||| ||||| | ||||  |||||| ||||||||  | ||||||||||  |||||||||||||||| | |||||||||||    
T  24436449 ttctgctccctccgttttaaaatgagtgtcgttttagccaattgcacatagattaaggaataaaatgaaataatcattagatataacactttt 24436541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 42661852 - 42661920
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaata 185  Q
    |||||| | ||||||||||| | |||| ||||||| |||||||| |||||||||||||| ||| |||||    
T  42661852 tactccattcgtttcaaaatgagtgtcgctttagccaattgcacacatattaaggaatgaaataaaata 42661920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 17674396 - 17674338
Alignment:
Q  162 catattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    ||||||||  |||| ||||||||||||||||||||||||| |||||| |||| |||||||    
T  17674396 catattaaaaaatgaaatgaaataatcattaaacataaca-tttttattaaactgccctt 17674338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 21375480 - 21375543
Alignment:
Q  116 ctactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    ||||||| ||||||||||||| | || ||||||||| |||||||| || ||||| |||||||||    
T  21375480 ctactccctccgtttcaaaataagtgccactttagccaattgcacacagattaatgaatggaat 21375543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 1513172 - 1513130
Alignment:
Q  165 attaaggaatggaatgaaataatcattaaacataacacttttt 207  Q
    |||||| |||| ||||||||||||||||||||||| |||||||    
T  1513172 attaagaaatgaaatgaaataatcattaaacataatacttttt 1513130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 2729698 - 2729756
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatg 175  Q
    |||||| ||||||||||||| |||||| ||||||| |||||||  || |||||||||||    
T  2729698 tactccatccgtttcaaaatgattgtcgctttagccaattgcatacagattaaggaatg 2729756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 26660995 - 26660937
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatg 175  Q
    |||||| ||||||| ||||| | |||| ||||||| |||||||| ||||||||||||||    
T  26660995 tactccctccgttttaaaatgagtgtcgctttagccaattgcacacatattaaggaatg 26660937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 26932588 - 26932530
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatg 175  Q
    |||||| ||||||| ||||| | |||| ||||||| |||||||| ||||||||||||||    
T  26932588 tactccctccgttttaaaatgagtgtcgctttagccaattgcacacatattaaggaatg 26932530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 14979963 - 14980052
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||||||||||||| | |||| ||||||    | |||| || |||||| ||||||||||||||||||||  | |||||||||||    
T  14979963 tactccctccgtttcaaaatgagtgtcgctttaggctttggcacacagattaagaaatggaatgaaataatcattggatataacactttt 14980052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 31557297 - 31557341
Alignment:
Q  162 catattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||||||| ||| ||||||||||||||||||| |||| ||||||    
T  31557297 catattaagaaatagaatgaaataatcattaaatataatactttt 31557341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 11994 - 12083
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||||||||||||| | |||| ||||||| ||||||||  | |||||||||||||||||||||||||||| |||||||||||||    
T  11994 tactccctccgtttcaaaatgagtgtcgctttagcgaattgcacagagattaaggaatggaatgaaataatcattagacataacactttt 12083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 40987194 - 40987283
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||||||| ||||| | |||| |||||||| ||||||| |||||||||||||| |||||||||||||||| |||||||||||||    
T  40987194 tactccctccgttttaaaatgagtgtcgctttagctcattgcacacatattaaggaatgaaatgaaataatcattagacataacactttt 40987283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 14378167 - 14378263
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    ||||||| ||||| | |||| |||||||||||||||| ||  |||| |||| |||||||||||||||| || ||||||| |||||||||| |||||||    
T  14378167 tccgttttaaaatgagtgtcgctttagctaattgcacacagtttaatgaatagaatgaaataatcatttaatataacac-ttttactaaactgccctt 14378263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 34225983 - 34225887
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    ||||||||||||| | |||| ||||||| ||||||||  | ||||||||||| |||||||||||||||| |||||| |  |||||||||| |||||||    
T  34225983 tccgtttcaaaatgagtgtcgctttagccaattgcacatagattaaggaatgaaatgaaataatcattagacataata-attttactaaattgccctt 34225887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 36360310 - 36360390
Alignment:
Q  140 tgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    |||| ||||||  ||||||||||| ||||| ||||| |||||||||||||||| ||||||||| |||||||||| |||||||    
T  36360310 tgtcgctttagtcaattgcacgcaaattaaagaatgaaatgaaataatcattagacataacac-ttttactaaactgccctt 36360390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 42970129 - 42970040
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||||||||||| ||||| | ||||  |||||| ||||||||  ||||||||||||| ||||||||||| |||| || ||||||||||    
T  42970129 tactccttccgttttaaaataagtgtcgttttagccaattgcacatatattaaggaatgcaatgaaataattattagacgtaacactttt 42970040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 29795147 - 29795214
Alignment:
Q  153 aattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    ||||||||||| ||||| |||||||||||||||||||||| |||||| || |||||||||| |||||||    
T  29795147 aattgcacgcagattaatgaatggaatgaaataatcattagacataatac-ttttactaaactgccctt 29795214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 4133263 - 4133201
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    |||||| ||||||||||||| | |||| ||||||| |||||||| ||||||||||||||||||    
T  4133263 tactccctccgtttcaaaatgagtgtcgctttagccaattgcacacatattaaggaatggaat 4133201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 30855347 - 30855278
Alignment:
Q  116 ctactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaata 185  Q
    ||||||| ||||||||||||| | |||| ||||| | |||||||||||||||||||||| |||| |||||    
T  30855347 ctactccctccgtttcaaaatgagtgtcgctttaaccaattgcacgcatattaaggaattgaataaaata 30855278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 4536802 - 4536701
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatg 216  Q
    |||||| ||| |||||||||   ||||  |||||| ||||||||  | ||||||||||| |||||||||||||||| ||||| ||| |||||||||| ||    
T  4536802 tactccctccatttcaaaatgtgtgtctgtttagccaattgcacataaattaaggaatgaaatgaaataatcattagacatatcac-ttttactaaactg 4536704  T
Q  217 ccc 219  Q
    |||    
T  4536703 ccc 4536701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 25383397 - 25383459
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    |||||| ||||||| ||||| | |||| ||||||| ||||||||||| |||||||||||||||    
T  25383397 tactccatccgttttaaaatgagtgtcgctttagccaattgcacgcaaattaaggaatggaat 25383459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 6592148 - 6592107
Alignment:
Q  165 attaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||||||||| |||||||||||||||| |||||||||||||    
T  6592148 attaaggaatgaaatgaaataatcattagacataacactttt 6592107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 24775430 - 24775330
Alignment:
Q  116 ctactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaat 215  Q
    ||||||| ||||||| || || | ||||  |||||  |||||||| || ||||||| || ||||||||||||||||| | ||||||| ||||||||||||    
T  24775430 ctactccatccgttttaagatgagtgtcgttttagtcaattgcacacaaattaaggtattgaatgaaataatcattagatataacac-ttttactaaaat 24775332  T
Q  216 gc 217  Q
    ||    
T  24775331 gc 24775330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 441143 - 441205
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    |||||| ||||||||||||| | ||||  |||||| |||||||| || |||||||||||||||    
T  441143 tactccctccgtttcaaaatgagtgtcgttttagccaattgcacacaaattaaggaatggaat 441205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 7743634 - 7743552
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||||||||||| | |||| ||||||| |||| ||| || ||||| ||||  |||||||||||||| | | |||||||||||    
T  7743634 tccgtttcaaaatgagtgtcgctttagccaatttcacacagattaaagaattaaatgaaataatcatcagatataacactttt 7743552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 25332812 - 25332750
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    |||||| ||||||| ||||| | |||| |||||||||||||||| || |||||||||| ||||    
T  25332812 tactccctccgttttaaaatgagtgtcgctttagctaattgcacacagattaaggaattgaat 25332750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 44228707 - 44228617
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaatt-gcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||||||| ||||| | |||| ||||||| |||| |||| |  |||||  ||||||||||||||||||||| | |||||||||||    
T  44228707 tactccctccgttttaaaatgaatgtcgctttagccaatttgcacacggattaaaaaatggaatgaaataatcattagatataacactttt 44228617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 1360379 - 1360319
Alignment:
Q  146 tttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||| ||||||||| || |||||| |||||||| ||||||||||||  ||| ||||||||    
T  1360379 tttagttaattgcacacaaattaagtaatggaataaaataatcattagccatgacactttt 1360319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 4840679 - 4840742
Alignment:
Q  157 gcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    |||| ||||||||| ||||||||||||||||||||  | |||||  ||||||||||| |||||||    
T  4840679 gcacacatattaagaaatggaatgaaataatcattggatataac-gtttttactaaactgccctt 4840742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 14511642 - 14511602
Alignment:
Q  165 attaaggaatggaatgaaataatcattaaacataacacttt 205  Q
    ||||||||||| |||||||||||||||| ||||||| ||||    
T  14511642 attaaggaatgaaatgaaataatcattagacataacccttt 14511602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 29840292 - 29840193
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatg 216  Q
    |||||| ||||||||||||| | ||||  |||| | |||||||| || |||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  29840292 tactccctccgtttcaaaatgagtgtcgttttacccaattgcacacaaattaaggaatggaatgaaataatcattagacataacac-ttttactaaaatg 29840194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 30492958 - 30492868
Alignment:
Q  116 ctactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||||| ||||||||||||| | |||   |||||| |||||||| || |||||||||||||||||||||||||||| |||||||||||||    
T  30492958 ctactccctccgtttcaaaatgagtgtggttttagccaattgcacacaaattaaggaatggaatgaaataatcattagacataacactttt 30492868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 22212578 - 22212489
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||||||| |||||   |||| ||||||| ||||| || |||||||||||||| |||||||||||||||| |||||||||||||    
T  22212578 tactccatccgttttaaaatgggtgtcgctttagccaattgaacacatattaaggaatgaaatgaaataatcattagacataacactttt 22212489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 32140798 - 32140880
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||||||||||| | ||||  |||||  |||||||| || ||||||||||| ||| ||||||||||||||||||||||||||    
T  32140798 tccgtttcaaaatgagtgtcgttttagtcaattgcacacaaattaaggaatgaaatcaaataatcattaaacataacactttt 32140880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 36805366 - 36805454
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||||||| |||| ||||| | ||||  |||| |||||||||| || ||||||||||| |||||||||||||||| |||||||||||||    
T  36805366 tactccttctgttttaaaatgagtgtcgtttta-ctaattgcacacagattaaggaatgaaatgaaataatcattagacataacactttt 36805454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 42672626 - 42672537
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| | ||||||||||| | ||||| |||||  |||||||| || ||||||||||  |||||||||||||||| |||||||||||||    
T  42672626 tactccatgcgtttcaaaatgagtgtcaatttagtcaattgcacacaaattaaggaatataatgaaataatcattagacataacactttt 42672537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 41920223 - 41920287
Alignment:
Q  115 tctactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    |||||||| ||||||||||||| | ||||| ||||||||||||||| |||||||| |||||||||    
T  41920223 tctactccctccgtttcaaaataagtgtcattttagctaattgcacacatattaaagaatggaat 41920287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 32140908 - 32141002
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccc 219  Q
    ||||||||||||| | ||| | |||| | ||||| || || |||||| ||| ||||||||||||||||| ||||||||| |||||||||| |||||    
T  32140908 tccgtttcaaaatgagtgttaatttaaccaattgtacacagattaagaaattgaatgaaataatcattagacataacac-ttttactaaactgccc 32141002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 2728314 - 2728376
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    |||||| ||||||||||||| | |||| ||||||| |||||||| ||||||||||||| ||||    
T  2728314 tactccatccgtttcaaaatgagtgtcgctttagccaattgcacacatattaaggaattgaat 2728376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 34534008 - 34534078
Alignment:
Q  119 ctccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatca 189  Q
    |||||||| ||||||||| | ||||| ||||||||||||||| || |||||||||| |||| || ||||||    
T  34534008 ctccttccctttcaaaataagtgtcattttagctaattgcactcagattaaggaattgaataaagtaatca 34534078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 56373491 - 56373553
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    |||||| ||||||||||||| | |||||||||||| ||||| |  ||||||||||||||||||    
T  56373491 tactccatccgtttcaaaatgagtgtcactttagccaattgaagacatattaaggaatggaat 56373553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 34360219 - 34360139
Alignment:
Q  140 tgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    |||| ||||||  |||||||  || ||||||||||| |||||||||||||||| | ||||||| |||||||||| |||||||    
T  34360219 tgtcgctttagtcaattgcatccagattaaggaatgaaatgaaataatcattagatataacac-ttttactaaactgccctt 34360139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 45049888 - 45049847
Alignment:
Q  165 attaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||||||||| |||||||||||||||| |||||||||||||    
T  45049888 attaaggaatgaaatgaaataatcattagacataacactttt 45049847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 51906315 - 51906274
Alignment:
Q  165 attaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| |||||||||||||||||| ||||||||||||||||    
T  51906315 attaagaaatggaatgaaataatcaataaacataacactttt 51906274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 37654653 - 37654593
Alignment:
Q  115 tctactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatg 175  Q
    |||||||| ||||||||||||| | ||||  |||||| |||||||| ||||||||||||||    
T  37654653 tctactccctccgtttcaaaatgagtgtcgttttagccaattgcacacatattaaggaatg 37654593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 39985058 - 39984990
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaata 185  Q
    |||||| ||||||||||||| | |||| ||||||| |||||||  ||||||||||||| |||| |||||    
T  39985058 tactccctccgtttcaaaatgagtgtcgctttagccaattgcatacatattaaggaattgaataaaata 39984990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 37445844 - 37445794
Alignment:
Q  170 ggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    |||||| |||||||||||||||| ||||||||| |||||||||| |||||||    
T  37445844 ggaatgaaatgaaataatcattagacataacac-ttttactaaactgccctt 37445794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 52957713 - 52957768
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    ||||||||||||| | |||| ||||||| |||||||| || |||||||||||||||    
T  52957713 tccgtttcaaaatgagtgtcgctttagccaattgcacacagattaaggaatggaat 52957768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 56556194 - 56556280
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||||||| ||||| | |||| ||||| | |||||||| || |||||||||| |||||||||   ||||| |||||||||||||    
T  56556194 tactccctccgttttaaaatgagtgtcgctttaaccaattgcacacagattaaggaattgaatgaaat---cattagacataacactttt 56556280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 28116484 - 28116422
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    |||||| ||||||||||||| | |||||||||| | |||||||| |  |||||||||||||||    
T  28116484 tactccatccgtttcaaaatgagtgtcactttaaccaattgcacacggattaaggaatggaat 28116422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 38692570 - 38692521
Alignment:
Q  165 attaaggaatggaatgaaataatcattaaacataacactttttactaaaat 215  Q
    ||||||||||| |||||||||||||| ||| ||||||| ||||||||||||    
T  38692570 attaaggaatgaaatgaaataatcatcaaagataacac-ttttactaaaat 38692521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 34316454 - 34316393
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaata 185  Q
    ||||||||||||| | |||||||||| | |||||||| || ||||||||||| ||| |||||    
T  34316454 tccgtttcaaaatgagtgtcactttaaccaattgcacacagattaaggaatgaaataaaata 34316393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 45520421 - 45520462
Alignment:
Q  165 attaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| |||||||| |||||||||||| |||||||||||||    
T  45520421 attaagaaatggaataaaataatcattagacataacactttt 45520462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 51737285 - 51737326
Alignment:
Q  165 attaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||||||| |||||||||||| |||| |||||||||||||    
T  51737285 attaaggaatagaatgaaataataattagacataacactttt 51737326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 54092138 - 54092097
Alignment:
Q  165 attaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||    
T  54092138 attaaggaatgaaatgaaatagtcattaaacataatactttt 54092097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 15501129 - 15501172
Alignment:
Q  177 aatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    |||||||||||||||| |||||||| ||||||||||| |||||||    
T  15501129 aatgaaataatcattagacataaca-tttttactaaactgccctt 15501172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 19878889 - 19878817
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatca 189  Q
    |||||| ||||||||||||| | |||| ||||||| |||||| |  | ||||||||||||||| || ||||||    
T  19878889 tactccctccgtttcaaaatgaatgtcgctttagccaattgcgcagagattaaggaatggaataaagtaatca 19878817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 27653905 - 27653853
Alignment:
Q  127 gtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    |||||||||| | |||| ||||||| |||||||| || |||||||||||||||    
T  27653905 gtttcaaaatgagtgtcgctttagccaattgcacacaaattaaggaatggaat 27653853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 30022275 - 30022215
Alignment:
Q  146 tttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||||||||  | ||||||||||| ||| |||||||||||| | |||||||||||    
T  30022275 tttagcaaattgcacatagattaaggaatgaaataaaataatcattatatataacactttt 30022215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 34096217 - 34096150
Alignment:
Q  153 aattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    |||||||| || |||||  |||| |||||||||||||||| || |||||| |||||||||| |||||||    
T  34096217 aattgcacacaaattaaaaaatgaaatgaaataatcattagacttaacac-ttttactaaattgccctt 34096150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 49080394 - 49080450
Alignment:
Q  118 actccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaat 174  Q
    ||||| ||||||||||||| | |||| ||||| | |||||||| |||||||||||||    
T  49080394 actccctccgtttcaaaataagtgtcgctttatccaattgcacacatattaaggaat 49080450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 50349769 - 50349872
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatg 216  Q
    |||||| ||||||||||||| | |||  ||||||| ||||| || || |||||||||||||||||||||||||||| ||||||||| |||||||||| ||    
T  50349769 tactccctccgtttcaaaatgagtgttgctttagccaattgaacacaaattaaggaatggaatgaaataatcattagacataacac-ttttactaaactg 50349867  T
Q  217 ccctt 221  Q
    |||||    
T  50349868 ccctt 50349872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 37437338 - 37437419
Alignment:
Q  140 tgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    |||| |||||||  ||||||| |||||||||||||| ||||||||| |||||| |||||||||||||||||||| |||||||    
T  37437338 tgtcgctttagcccattgcacacatattaaggaatgaaatgaaatattcattagacataacactttttactaaattgccctt 37437419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 84430 - 84533
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatg 216  Q
    |||||| || |||||||||| | |||| ||||||  |||||||| || |||||||||| ||||||||||||||||| ||||||||| |||||||||||||    
T  84430 tactccatctgtttcaaaatgagtgtcgctttagtcaattgcacacagattaaggaattgaatgaaataatcattagacataacac-ttttactaaaatg 84528  T
Q  217 ccctt 221  Q
     ||||    
T  84529 tcctt 84533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 48259775 - 48259864
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||||||||||||| | ||||  |||||| |||||||| || |||||||||| ||||||||||||| ||| |||||||||||||    
T  48259775 tactccctccgtttcaaaatgagtgtcgttttagccaattgcacacagattaaggaatagaatgaaataatcgttagacataacactttt 48259864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 28751320 - 28751423
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatg 216  Q
    |||||| || |||||||||| | ||||  |||||| |||||||| || ||||||||||| ||| |||||||||||| |||||||| ||||||||||| ||    
T  28751320 tactccctctgtttcaaaatgagtgtcgttttagccaattgcacacagattaaggaatgaaataaaataatcattagacataaca-tttttactaaactg 28751418  T
Q  217 ccctt 221  Q
    |||||    
T  28751419 ccctt 28751423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 6377205 - 6377299
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccc 219  Q
    ||||||| ||||| | |||| ||||||| ||||||||  | ||||||||||| |||||||||||||||| ||||||||| |||||||||| |||||    
T  6377205 tccgttttaaaatgagtgtcgctttagccaattgcacataaattaaggaatgaaatgaaataatcattagacataacac-ttttactaaattgccc 6377299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 30006367 - 30006284
Alignment:
Q  120 tccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacact 203  Q
    ||||||||||||||||| | |||| ||||||  |||||||| || ||||| |||| ||||||||||||||||| ||||||||||    
T  30006367 tccttccgtttcaaaatgaatgtcgctttagtcaattgcacacagattaatgaattgaatgaaataatcattagacataacact 30006284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 45749411 - 45749500
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||||||| ||||| | |||| ||||| |||||||||| |||||||   |||||||| |||||||||||| |||||||||||||    
T  45749411 tactccatccgttttaaaatgagtgtcgctttaactaattgcacacatattacataatggaataaaataatcattagacataacactttt 45749500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 24040984 - 24041039
Alignment:
Q  165 attaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||    
T  24040984 attaaggaatggaatgaaataatcattagacataacac-ttttactaaactgccctt 24041039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 43105551 - 43105603
Alignment:
Q  154 attgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||||||||||||||| ||| ||||||||||||||||| |||||||||||||    
T  43105551 attgcacgcatattaagaaattgaatgaaataatcattagacataacactttt 43105603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 49426329 - 49426394
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaa 182  Q
    |||||| ||||||||||||| | |||| ||||||  |||||||| |||||||||||||||||||||    
T  49426329 tactccatccgtttcaaaatgagtgtcgctttaggcaattgcacacatattaaggaatggaatgaa 49426394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 6332394 - 6332318
Alignment:
Q  130 tcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||||| | |||| ||||| | |||||||| || |||||| ||| ||||||||||||||||| |||||||||||||    
T  6332394 tcaaaatgagtgtcgctttaaccaattgcacacaaattaagaaattgaatgaaataatcattagacataacactttt 6332318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 12002450 - 12002383
Alignment:
Q  153 aattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    |||||||| |||||||||||||| |||||||||||||| | |||||| || |||||||||| |||||||    
T  12002450 aattgcacacatattaaggaatgaaatgaaataatcatcagacataatac-ttttactaaactgccctt 12002383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 17919741 - 17919835
Alignment:
Q  125 ccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    |||||||||||| | |||| ||||||| |||| ||  || ||||| ||||| ||||||||||||||| |||||||||| |||||||||| |||||||    
T  17919741 ccgtttcaaaatgagtgtcgctttagccaattacatacagattaatgaatgaaatgaaataatcatt-aacataacac-ttttactaaactgccctt 17919835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 48319924 - 48320016
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    ||||||||||||| | |||| ||||||| |||||||| ||||||||| |||||||||    |||||||| |||||| || |||||||||| |||||||    
T  48319924 tccgtttcaaaatgagtgtcgctttagccaattgcacacatattaagaaatggaatg----aatcattagacataagac-ttttactaaattgccctt 48320016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 32806855 - 32806910
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    ||||||||||||| |||||| ||||||| | |||||| ||||||||||||||||||    
T  32806855 tccgtttcaaaatgattgtcgctttagccagttgcacacatattaaggaatggaat 32806910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 5317537 - 5317590
Alignment:
Q  165 attaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccc 219  Q
    ||||||||||| |||||||||||||||| ||||||||| |||||||||| |||||    
T  5317537 attaaggaatgaaatgaaataatcattagacataacac-ttttactaaattgccc 5317590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 40060856 - 40060921
Alignment:
Q  155 ttgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    |||||| ||||||||| |||| ||||||||||| |||| ||||||||| |||||||||| |||||||    
T  40060856 ttgcacacatattaagaaatgaaatgaaataatgattagacataacac-ttttactaaattgccctt 40060921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 44108842 - 44108784
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatg 175  Q
    |||||| ||||||||||||| | || ||||||||| |||||||| ||||||||||||||    
T  44108842 tactccatccgtttcaaaatgagtgacactttagccaattgcacacatattaaggaatg 44108784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 40719226 - 40719155
Alignment:
Q  146 tttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgcc 218  Q
    |||||| |||||||| ||  |||||||||| |||||||||||||||| |||| ||| ||||||||||| ||||    
T  40719226 tttagccaattgcacacaagttaaggaatgaaatgaaataatcattagacatcaca-tttttactaaactgcc 40719155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 5854143 - 5854198
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    ||||||||||||| | |||||||||||| |||||||| || |||||||||| ||||    
T  5854143 tccgtttcaaaatgagtgtcactttagccaattgcacacagattaaggaatagaat 5854198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 11134371 - 11134434
Alignment:
Q  116 ctactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    ||||||| ||| ||||||||| | ||||  |||||| |||||||| ||||||||||||||||||    
T  11134371 ctactccctccatttcaaaatgagtgtcgttttagccaattgcacacatattaaggaatggaat 11134434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 15698691 - 15698750
Alignment:
Q  146 tttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacacttt 205  Q
    |||||| |||||||| || ||||||||||  ||| |||||||||||| ||||||||||||    
T  15698691 tttagccaattgcacacaaattaaggaataaaattaaataatcattagacataacacttt 15698750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 5463816 - 5463758
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatg 175  Q
    |||||| ||||||||||||| | |||| ||||||| ||||||||  |||||||||||||    
T  5463816 tactccatccgtttcaaaatgagtgtcgctttagccaattgcacatatattaaggaatg 5463758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 12851972 - 12851871
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatg 216  Q
    |||||| ||||||| ||||| | |||| ||||||| |||| |||  | ||||||||||| ||| ||||||||||||   ||||||| ||||| |||||||    
T  12851972 tactccatccgttttaaaataagtgtcgctttagccaattacacaaagattaaggaatgaaataaaataatcattaggtataacac-ttttaataaaatg 12851874  T
Q  217 ccc 219  Q
    |||    
T  12851873 ccc 12851871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 43755260 - 43755190
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaa 194  Q
    ||||||| ||||| | |||| ||||||| |||||||| || ||||  ||||||||||||||||| ||||||    
T  43755260 tccgttttaaaatgagtgtcgctttagccaattgcacacagattacagaatggaatgaaataataattaaa 43755190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 15647021 - 15647074
Alignment:
Q  153 aattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||||| || ||||||||||| || |||||| |||||| |||||||||||||    
T  15647021 aattgcacacaaattaaggaatgtaaagaaatattcattagacataacactttt 15647074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 43929876 - 43929835
Alignment:
Q  165 attaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||| ||||||||||||||||| |||||||||||||    
T  43929876 attaagaaattgaatgaaataatcattagacataacactttt 43929835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 2245980 - 2245933
Alignment:
Q  165 attaaggaatggaatgaaataatcattaaacataacactttttactaaa 213  Q
    |||||| ||||||||||| |||||||||||||||| | |||||||||||    
T  2245980 attaagaaatggaatgaagtaatcattaaacataata-tttttactaaa 2245933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 45377071 - 45377166
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaa 213  Q
    |||||| ||||||||||||| ||||||  |||| | |||| ||| || |||||| |||| |||||||| ||||||| || || || |||||||||||    
T  45377071 tactccctccgtttcaaaatgattgtcgttttaaccaattacacacaaattaagaaatgaaatgaaatgatcattagacttatca-tttttactaaa 45377166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 49468621 - 49468689
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaata 185  Q
    |||||| ||| ||||||||| | |||| ||||||| |||||||| || ||||||||||| ||| |||||    
T  49468621 tactccctccatttcaaaatgagtgtcgctttagccaattgcacacagattaaggaatgaaataaaata 49468689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 38328967 - 38329056
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||||||||||||| | | || ||||||  |||||||| || |||||||||||||||||||||||||||| |||||||||||||    
T  38328967 tactccctccgtttcaaaatgagtttcgctttagtcaattgcacacagattaaggaatggaatgaaataatcattagacataacactttt 38329056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 32326630 - 32326740
Alignment:
Q  110 aaatttctactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttac 209  Q
    |||||| |||| | ||||||| ||||| | |||| ||||||  |||||||| || ||||||||||| |||||||||||||||| || |||||| ||||||    
T  32326630 aaatttttactacatccgttttaaaatgagtgtcgctttagtcaattgcacacagattaaggaatgaaatgaaataatcattagacgtaacac-ttttac 32326728  T
Q  210 taaaatgccctt 221  Q
    |||| |||||||    
T  32326729 taaactgccctt 32326740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 2803174 - 2803256
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||||||||||| | |||| ||||| |||||||||| || |||  |||||| |||||||||||||||| |||||||||||||    
T  2803174 tccgtttcaaaataagtgtcgctttaactaattgcacacaaattttggaatgaaatgaaataatcattatacataacactttt 2803256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 36915606 - 36915502
Alignment:
Q  116 ctactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaat 215  Q
    ||||||| ||||||| ||||| | ||||  |||| | |||||||  || |||||||||||||||||||||||||||| |||||| | ||||||||||| |    
T  36915606 ctactccctccgttttaaaatgagtgtcgttttaaccaattgcatacagattaaggaatggaatgaaataatcattagacataata-tttttactaaatt 36915508  T
Q  216 gccctt 221  Q
    ||||||    
T  36915507 gccctt 36915502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 41415072 - 41414983
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||||||| ||||| | ||||  |||||| ||||||||  ||||||||||||| |||||||||||||||| || ||||||||||    
T  41415072 tactccatccgttttaaaataaatgtcgttttagccaattgcacatatattaaggaatgaaatgaaataatcattagacgtaacactttt 41414983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 39463498 - 39463436
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    |||||| ||||||||||||| | |||| ||||||| |||||||| ||||||||||||||||||    
T  39463498 tactccctccgtttcaaaatgagtgtcgctttagccaattgcacacatattaaggaatggaat 39463436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 9022636 - 9022547
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||||||| ||||| | ||||  |||||| |||||||| || |||||  ||||||||||| ||||||||| |||||||||||||    
T  9022636 tactccctccgttttaaaatgagtgtcgttttagccaattgcacacagattaaaaaatggaatgaattaatcattagacataacactttt 9022547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 8382399 - 8382500
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatg 216  Q
    |||||| ||||||| ||||| | ||||  |||||||||||||||  | ||||| ||||| ||| |||||||| ||| ||||||||| |||||||||| ||    
T  8382399 tactccatccgttttaaaatgagtgtcgttttagctaattgcacataaattaaagaatgaaataaaataatcgttagacataacac-ttttactaaactg 8382497  T
Q  217 ccc 219  Q
    |||    
T  8382498 ccc 8382500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 45187231 - 45187297
Alignment:
Q  140 tgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||| ||||||| |||||||| || ||||||||||  |||||||||||||||| |||| ||||||||    
T  45187231 tgtcgctttagccaattgcacacagattaaggaatataatgaaataatcattagacatgacactttt 45187297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 2812987 - 2812915
Alignment:
Q  146 tttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccc 219  Q
    |||||| |||||||  || |||||| ||| ||||||||||||||||| ||||||||| |||||||||| |||||    
T  2812987 tttagccaattgcatacaaattaagtaattgaatgaaataatcattagacataacac-ttttactaaactgccc 2812915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 27109732 - 27109821
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||||||||||||| | ||||  ||||| |  | |||| ||||||||| ||| ||||||||||||||||| | |||||||||||    
T  27109732 tactccatccgtttcaaaatgagtgtcgttttaggtgttggcacacatattaagaaatagaatgaaataatcattagatataacactttt 27109821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 22601365 - 22601286
Alignment:
Q  127 gtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||||||| | ||||  |||||| ||||| || |||||||| ||||  |||||||||||||||| ||||||| |||||    
T  22601365 gtttcaaaatgaatgtcgatttagccaattgtacacatattaatgaataaaatgaaataatcattagacataactctttt 22601286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 6839392 - 6839358
Alignment:
Q  172 aatggaatgaaataatcattaaacataacactttt 206  Q
    ||||||||||||||||||||| |||||||||||||    
T  6839392 aatggaatgaaataatcattagacataacactttt 6839358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 37185622 - 37185671
Alignment:
Q  165 attaaggaatggaatgaaataatcattaaacataacactttttactaaaat 215  Q
    ||||||| || ||||||||||||||||| ||||||||| ||||||||||||    
T  37185622 attaaggtatagaatgaaataatcattagacataacac-ttttactaaaat 37185671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 156412 - 156371
Alignment:
Q  165 attaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||||| || |||||||||||||||| |||||||||||||    
T  156412 attaaggattgaaatgaaataatcattagacataacactttt 156371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 5588440 - 5588480
Alignment:
Q  177 aatgaaataatcattaaacataacactttttactaaaatgcc 218  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  5588440 aatgaaataatcattaaacataaca-tttttactaaactgcc 5588480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 8106836 - 8106889
Alignment:
Q  153 aattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||||| || ||||| ||||| |||||||||||||||| ||||| |||||||    
T  8106836 aattgcacacaaattaaagaatgaaatgaaataatcattagacatagcactttt 8106889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 17921191 - 17921130
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaata 185  Q
    ||||||||||||||| |||  ||| ||| |||||||| ||||||||||||| |||| |||||    
T  17921191 tccgtttcaaaattaatgttgcttaagccaattgcacacatattaaggaattgaataaaata 17921130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 32661526 - 32661449
Alignment:
Q  127 gtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactt 204  Q
    |||||||||| | ||| | |||||  |||||||| || ||||||||||| ||| |||||||||||| ||||| |||||    
T  32661526 gtttcaaaatgaatgtgattttagtcaattgcacacaaattaaggaatgaaataaaataatcattagacatatcactt 32661449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 39970527 - 39970455
Alignment:
Q  146 tttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccc 219  Q
    |||||| ||||||||  | ||||| ||||| |||||||||||||||| ||||| ||| |||||||||| |||||    
T  39970527 tttagccaattgcacataaattaaagaatgaaatgaaataatcattagacataccac-ttttactaaactgccc 39970455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 34461494 - 34461562
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaata 185  Q
    |||||||| ||||||||||| | |||| ||||||| ||||| || || ||||||||||| ||| |||||    
T  34461494 tactccttacgtttcaaaatgagtgtcgctttagccaattgtacacagattaaggaatgaaataaaata 34461562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 33056203 - 33056299
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    ||||||||||||| | ||||  |||||  ||||||||  | ||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||    
T  33056203 tccgtttcaaaatgagtgtcgttttagtcaattgcacatagattaaggaatgaaatgaaataatcattaaacataacac-ttttactaaactgccctt 33056299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 42259461 - 42259564
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatg 216  Q
    |||||||||||||||||||| | |||| || |||| |||||||| |  ||||| ||||| ||||| ||||| |||| ||||||||| |||||||||||||    
T  42259461 tactccttccgtttcaaaatgagtgtcgctctagccaattgcacacggattaaagaatgaaatgagataattattagacataacac-ttttactaaaatg 42259559  T
Q  217 ccctt 221  Q
    |||||    
T  42259560 ccctt 42259564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 40299079 - 40298978
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatg 216  Q
    |||||| ||||||||||||| | ||||  |||||| |||||||| || ||||||||||| ||||||||||| |||  ||||||||| |||||||||| ||    
T  40299079 tactccctccgtttcaaaatgagtgtcgttttagccaattgcacacaaattaaggaatgaaatgaaataataattggacataacac-ttttactaaactg 40298981  T
Q  217 ccc 219  Q
    |||    
T  40298980 ccc 40298978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 1742232 - 1742170
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    |||||| ||||||||||||| | |||| ||||||| |||||||| ||||||||||||||||||    
T  1742232 tactccctccgtttcaaaatgagtgtcgctttagccaattgcacacatattaaggaatggaat 1742170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 128 - 206
Target Start/End: Complemental strand, 42121772 - 42121694
Alignment:
Q  128 tttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||||||| | |||| ||||||| |||||||| || ||||||||||| ||| |||||||||||| ||||| |||||||    
T  42121772 tttcaaaatgagtgtcgctttagccaattgcacacagattaaggaatgaaatcaaataatcattagacatatcactttt 42121694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 17869442 - 17869389
Alignment:
Q  153 aattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||||| || ||||||||||| |||||||||||||||| |||||||||||||    
T  17869442 aattgcacacagattaaggaatgaaatgaaataatcattagacataacactttt 17869389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 18733675 - 18733586
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| | ||||||||||| | ||||  |||||  ||||| || || |||||| | |||||||||||||||||||| ||||||||||||    
T  18733675 tactccattcgtttcaaaataagtgtcgttttagtcaattgtacacaaattaagtagtggaatgaaataatcattaagcataacactttt 18733586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 32275400 - 32275336
Alignment:
Q  153 aattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgcc 218  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||| ||  ||||||||||| ||||    
T  32275400 aattgcacacatattaagaaatgaaatgaaataatcattaaacatgac-gtttttactaaactgcc 32275336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 40207299 - 40207373
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcatta 192  Q
    |||||| ||||||||||||| | |||  ||||||| |||||||| |||||||||| || ||||| |||||||||||    
T  40207299 tactccatccgtttcaaaatgagtgttgctttagccaattgcacacatattaaggtattgaatg-aataatcatta 40207373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 19920218 - 19920284
Alignment:
Q  140 tgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||| |||||  |||||||  || ||||||||||| |||||||||||||||| |||| ||||||||    
T  19920218 tgtcattttagtcaattgcatacaaattaaggaatgaaatgaaataatcattagacatgacactttt 19920284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 27947411 - 27947473
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    |||||| ||||||||||||| | |||||||||| | |||||||| |||||||| |||| ||||    
T  27947411 tactccatccgtttcaaaatgagtgtcactttaaccaattgcacacatattaatgaattgaat 27947473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 31416672 - 31416734
Alignment:
Q  127 gtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatca 189  Q
    |||| ||||| ||||||||||||||||||||||| |  ||||||||||| ||| || ||||||    
T  31416672 gttttaaaatgattgtcactttagctaattgcacacgaattaaggaatgaaataaagtaatca 31416734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 47272362 - 47272289
Alignment:
Q  147 ttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    ||||| |||||||| || ||||| ||||| |||| ||||| ||||||||||||||  |||||||||| |||||||    
T  47272362 ttagccaattgcacacagattaaagaatgaaatggaataaccattaaacataaca-attttactaaactgccctt 47272289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 22627314 - 22627351
Alignment:
Q  165 attaaggaatggaatgaaataatcattaaacataacac 202  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  22627314 attaaggaatgaaatgaaataatcgttaaacataacac 22627351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 19906655 - 19906587
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaata 185  Q
    |||||| ||||||||||||| | |||| ||||||| ||||||||    ||||||||||||||| |||||    
T  19906655 tactccctccgtttcaaaatgagtgtcgctttagccaattgcacatggattaaggaatggaataaaata 19906587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 48838628 - 48838676
Alignment:
Q  153 aattgcacgcatattaaggaatggaatgaaataatcattaaacataaca 201  Q
    |||||||| || ||||||||||  |||||||||||||||| ||||||||    
T  48838628 aattgcacacaaattaaggaataaaatgaaataatcattagacataaca 48838676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 13009 - 13079
Alignment:
Q  146 tttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgc 217  Q
    ||||| ||||||||| || ||||||||||| |||||||||||||||| ||||||||| ||||||||||||||    
T  13009 tttagttaattgcacacagattaaggaatgaaatgaaataatcattagacataacac-ttttactaaaatgc 13079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 6239 - 6297
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatg 175  Q
    |||||||||||||||||||| | ||||||||||||||||||||| |  |||||||||||    
T  6239 tactccttccgtttcaaaatgagtgtcactttagctaattgcacacggattaaggaatg 6297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 12828624 - 12828696
Alignment:
Q  148 tagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    |||| |||||||| || ||||| ||||| |||||||||||||||| ||||||||| |||||||||| |||||||    
T  12828624 tagccaattgcacacaaattaatgaatgaaatgaaataatcattagacataacac-ttttactaaactgccctt 12828696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 30627315 - 30627233
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||||| ||||| | ||||  ||||| ||||||||| || ||||| ||||| |||||||||||||||| | |||||||||||    
T  30627315 tccgttttaaaatgagtgtcgttttagataattgcacacaaattaatgaatgaaatgaaataatcattagatataacactttt 30627233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 8052539 - 8052486
Alignment:
Q  153 aattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||||| || |||||| |||| |||||||||||||||| |||||||||||||    
T  8052539 aattgcacacaaattaagaaatgaaatgaaataatcattagacataacactttt 8052486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 31275553 - 31275642
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||||| ||||||||||||| | |||   |||||| |||||||| || ||||||||| | |||||||||| ||||| || ||||||||||    
T  31275553 tactccctccgtttcaaaataagtgttgttttagccaattgcacacagattaaggaaagaaatgaaataaccattagacgtaacactttt 31275642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 1135159 - 1135104
Alignment:
Q  124 tccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    ||||||||||||| | |||  ||||||| |||||||| ||||||||||||||||||    
T  1135159 tccgtttcaaaataagtgttgctttagccaattgcacacatattaaggaatggaat 1135104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 23936540 - 23936598
Alignment:
Q  162 catattaaggaatggaatgaaataatcattaaacataacactttttactaaaatgccctt 221  Q
    ||||||||| ||||||||||||||||||||| | |||||| |||||||| || |||||||    
T  23936540 catattaagaaatggaatgaaataatcattagatataaca-tttttactgaattgccctt 23936598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 29713318 - 29713380
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    |||||||||||||| ||||| | |||| ||||||  |||||||| | ||||||||||||||||    
T  29713318 tactccttccgttttaaaatgagtgtcgctttagtcaattgcacacgtattaaggaatggaat 29713380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 31753 - 31695
Alignment:
Q  148 tagctaattgcacgcatattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    |||| |||||||| || ||||| ||||| |||||||||||||||| | |||||||||||    
T  31753 tagccaattgcacacaaattaacgaatgaaatgaaataatcattagagataacactttt 31695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 4065 - 4109
Alignment:
Q  162 catattaaggaatggaatgaaataatcattaaacataacactttt 206  Q
    ||||||||| |||||||||||| |||||||| |||||||| ||||    
T  4065 catattaagaaatggaatgaaacaatcattatacataacattttt 4109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 24652 - 24720
Alignment:
Q  117 tactccttccgtttcaaaattattgtcactttagctaattgcacgcatattaaggaatggaatgaaata 185  Q
    |||||| ||||||| ||||| | |||| ||||||| | ||| || |||||||||||||||||| |||||    
T  24652 tactccatccgttttaaaatgagtgtcgctttagccatttgtacacatattaaggaatggaataaaata 24720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 62860 - 62812
Alignment:
Q  131 caaaattattgtcactttagctaattgcacgcatattaaggaatggaat 179  Q
    |||||| | |||| ||||||| |||||||| ||||||||||||||||||    
T  62860 caaaatgagtgtcgctttagccaattgcacacatattaaggaatggaat 62812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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