View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17210_low_9 (Length: 420)

Name: NF17210_low_9
Description: NF17210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17210_low_9
NF17210_low_9
[»] chr4 (4 HSPs)
chr4 (97-403)||(23817899-23818210)
chr4 (284-317)||(19388933-19388966)
chr4 (101-133)||(23823438-23823470)
chr4 (101-133)||(23827274-23827306)
[»] chr7 (1 HSPs)
chr7 (283-317)||(43434523-43434557)
[»] chr1 (5 HSPs)
chr1 (284-315)||(27723845-27723876)
chr1 (283-327)||(3497235-3497279)
chr1 (288-316)||(27737006-27737034)
chr1 (283-323)||(40494258-40494298)
chr1 (283-315)||(50187309-50187341)
[»] chr8 (2 HSPs)
chr8 (283-312)||(30585122-30585151)
chr8 (290-327)||(41953172-41953209)
[»] chr6 (2 HSPs)
chr6 (285-317)||(1960345-1960377)
chr6 (284-312)||(34406440-34406468)
[»] chr5 (1 HSPs)
chr5 (283-311)||(27976386-27976414)


Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 97 - 403
Target Start/End: Complemental strand, 23818210 - 23817899
Alignment:
Q  97 tgatatgaagaacctgtttgtaatgaagttcaaggaaagattaaaaagcaaggaggagaggtgaagaactatgttcatatgtagggaacttgtatgggca 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  23818210 tgatatgaagaacctgtttgtaatgaagttcaaggaaagattaaaaagcaaggaggagaggtgaagaactatgtttatatgtagggaacttgtatggaca 23818111  T
Q  197 tagtgtggtggtccacacaagaaagatttatgaagcaccgatatggacatcagacacgaaatt-------agaattaacacatgtacacacaaaataatt 289  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||| |||||||||  |||||||    
T  23818110 tagtgtggtggtccacgtaagaaagatttatgaagcactgatatggacatcagacacgaaattagaaattagaattaacacgtgtacacac--aataatt 23818013  T
Q  290 taagaaaatgaaagtgattgaatataataacatgtgtctttttgtattggcattgtatatcaatatgtatcgaacaccttacacaccttagtgtcgcagc 389  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23818012 taagaaaatgaaagtgattgaatataataacatgtgtcgttttgtattggcattgtatatcaatatgtatcgaacaccttacacaccttagtgtcgcagc 23817913  T
Q  390 atagagcaagactg 403  Q
    ||||||||||||||    
T  23817912 atagagcaagactg 23817899  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 317
Target Start/End: Original strand, 19388933 - 19388966
Alignment:
Q  284 ataatttaagaaaatgaaagtgattgaatataat 317  Q
    |||||||||| |||||||||||||||||||||||    
T  19388933 ataatttaaggaaatgaaagtgattgaatataat 19388966  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 23823470 - 23823438
Alignment:
Q  101 atgaagaacctgtttgtaatgaagttcaaggaa 133  Q
    ||||||||||||||||| |||||||||||||||    
T  23823470 atgaagaacctgtttgtgatgaagttcaaggaa 23823438  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 23827306 - 23827274
Alignment:
Q  101 atgaagaacctgtttgtaatgaagttcaaggaa 133  Q
    |||||||||||||| ||||||||||||||||||    
T  23827306 atgaagaacctgttagtaatgaagttcaaggaa 23827274  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 317
Target Start/End: Original strand, 43434523 - 43434557
Alignment:
Q  283 aataatttaagaaaatgaaagtgattgaatataat 317  Q
    |||||||||||||||||||||||||||||||||||    
T  43434523 aataatttaagaaaatgaaagtgattgaatataat 43434557  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 315
Target Start/End: Original strand, 27723845 - 27723876
Alignment:
Q  284 ataatttaagaaaatgaaagtgattgaatata 315  Q
    ||||||||||||||||||||||||||||||||    
T  27723845 ataatttaagaaaatgaaagtgattgaatata 27723876  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 3497279 - 3497235
Alignment:
Q  283 aataatttaagaaaatgaaagtgattgaatataataacatgtgtc 327  Q
    |||||||| | | |||||||||||||||||||||| |||||||||    
T  3497279 aataattttaaataatgaaagtgattgaatataatcacatgtgtc 3497235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 316
Target Start/End: Original strand, 27737006 - 27737034
Alignment:
Q  288 tttaagaaaatgaaagtgattgaatataa 316  Q
    |||||||||||||||||||||||||||||    
T  27737006 tttaagaaaatgaaagtgattgaatataa 27737034  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 40494298 - 40494258
Alignment:
Q  283 aataatttaagaaaatgaaagtgattgaatataataacatg 323  Q
    ||||||||||| |||||||||||||||||| |||| |||||    
T  40494298 aataatttaagcaaatgaaagtgattgaatttaatcacatg 40494258  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 50187309 - 50187341
Alignment:
Q  283 aataatttaagaaaatgaaagtgattgaatata 315  Q
    |||||||||||||||| ||||||||||||||||    
T  50187309 aataatttaagaaaataaaagtgattgaatata 50187341  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 312
Target Start/End: Complemental strand, 30585151 - 30585122
Alignment:
Q  283 aataatttaagaaaatgaaagtgattgaat 312  Q
    ||||||||||||||||||||||||||||||    
T  30585151 aataatttaagaaaatgaaagtgattgaat 30585122  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 41953209 - 41953172
Alignment:
Q  290 taagaaaatgaaagtgattgaatataataacatgtgtc 327  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  41953209 taagaaaatgaaagtgattgaatgtaatcacatgtgtc 41953172  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 1960377 - 1960345
Alignment:
Q  285 taatttaagaaaatgaaagtgattgaatataat 317  Q
    |||||||||||||||||||||||||||| ||||    
T  1960377 taatttaagaaaatgaaagtgattgaatgtaat 1960345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 312
Target Start/End: Original strand, 34406440 - 34406468
Alignment:
Q  284 ataatttaagaaaatgaaagtgattgaat 312  Q
    |||||||||||||||||||||||||||||    
T  34406440 ataatttaagaaaatgaaagtgattgaat 34406468  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 311
Target Start/End: Original strand, 27976386 - 27976414
Alignment:
Q  283 aataatttaagaaaatgaaagtgattgaa 311  Q
    |||||||||||||||||||||||||||||    
T  27976386 aataatttaagaaaatgaaagtgattgaa 27976414  T

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