View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17211_high_16 (Length: 307)

Name: NF17211_high_16
Description: NF17211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17211_high_16
NF17211_high_16
[»] chr7 (9 HSPs)
chr7 (9-268)||(46356990-46357247)
chr7 (189-268)||(39907532-39907611)
chr7 (189-262)||(11592739-11592812)
chr7 (189-268)||(36651044-36651123)
chr7 (189-268)||(38896667-38896746)
chr7 (189-268)||(33350959-33351038)
chr7 (203-268)||(22346576-22346641)
chr7 (189-267)||(32629662-32629740)
chr7 (189-260)||(24178356-24178427)
[»] chr5 (4 HSPs)
chr5 (189-268)||(2076627-2076706)
chr5 (189-267)||(24177574-24177652)
chr5 (189-268)||(20318041-20318120)
chr5 (192-268)||(1288681-1288757)
[»] chr2 (5 HSPs)
chr2 (189-268)||(8179843-8179922)
chr2 (197-268)||(452769-452840)
chr2 (189-270)||(13148372-13148453)
chr2 (191-274)||(45368773-45368856)
chr2 (189-268)||(24584759-24584841)
[»] chr1 (6 HSPs)
chr1 (189-268)||(51441917-51441996)
chr1 (189-268)||(43241534-43241613)
chr1 (193-268)||(49348555-49348630)
chr1 (189-268)||(8670968-8671047)
chr1 (189-265)||(29173685-29173761)
chr1 (191-268)||(11681873-11681950)
[»] chr4 (8 HSPs)
chr4 (189-274)||(435282-435367)
chr4 (191-274)||(1778164-1778247)
chr4 (189-268)||(23907455-23907534)
chr4 (189-268)||(48623680-48623759)
chr4 (189-262)||(53703659-53703732)
chr4 (189-261)||(27451333-27451405)
chr4 (189-246)||(16001117-16001174)
chr4 (202-267)||(39707528-39707593)
[»] chr8 (4 HSPs)
chr8 (189-268)||(36544202-36544281)
chr8 (213-268)||(42855168-42855223)
chr8 (189-268)||(15216422-15216501)
chr8 (215-265)||(41445398-41445448)
[»] chr3 (5 HSPs)
chr3 (189-268)||(51448862-51448941)
chr3 (189-268)||(52137878-52137957)
chr3 (189-268)||(38849152-38849231)
chr3 (189-262)||(27916628-27916701)
chr3 (220-262)||(30724938-30724980)
[»] scaffold0018 (1 HSPs)
scaffold0018 (191-268)||(30520-30597)
[»] chr6 (6 HSPs)
chr6 (189-253)||(6082439-6082503)
chr6 (189-264)||(30669945-30670020)
chr6 (189-262)||(2681595-2681668)
chr6 (189-262)||(5260407-5260480)
chr6 (189-274)||(20428784-20428869)
chr6 (220-263)||(3629347-3629390)
[»] scaffold0113 (1 HSPs)
scaffold0113 (189-268)||(13411-13490)
[»] scaffold0045 (1 HSPs)
scaffold0045 (214-264)||(90247-90297)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 46357247 - 46356990
Alignment:
Q  9 gagatgaaagtgaaaaactggatatattaggaaaaccagaaatatattacgcctgaaataaaatatcacttatatttcctaattcaatgaccaatgcaac 108  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||  ||||||| |||||||||||||||||    
T  46357247 gagatgaaagtgaaaaactggatatattaggaacaccataaatatattacgccttaaataaaatatcacttat--ttcctaagtcaatgaccaatgcaac 46357150  T
Q  109 tttttcatggtttcatttcattacattaggggccaagtgccaccatgtgattctatcctgccactcaaggtaatcaccccagttatgggaaagggtgatc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46357149 tttttcatggtttcatttcattacattaggggccaagtgccaccatgtgattctatcctgccactcaaggtaatcaccccagttatgggaaagggtgatc 46357050  T
Q  209 gaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||    
T  46357049 gaaagaagaccaaaaaaggagactcgagttacggataatcaatttggttttaggcctggg 46356990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 39907611 - 39907532
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39907611 agttatgggaaagggtgatcgaaagaagactaagaaaggagacccgagttacggataaccaatttggttttatgcctggg 39907532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 11592739 - 11592812
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatg 262  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11592739 agttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatg 11592812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 36651044 - 36651123
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36651044 agttatgggaaagggtgattgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatgtctggg 36651123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 38896667 - 38896746
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38896667 agttatggaaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaattcggttttatgcctggg 38896746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 33351038 - 33350959
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  33351038 agttgtgggaaagggtgatcaaaagaagactaagaaaggagactctagttacggataaccaatttggttttatgcttggg 33350959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 22346576 - 22346641
Alignment:
Q  203 gtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22346576 gtgatcgaaagaagactaagaaaggagactcgagtttcggataaccaatttggttttatgcctggg 22346641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 32629662 - 32629740
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctgg 267  Q
    |||||||||||||||| || ||| |||||| |||||| |||||||  |||||||||||||||||||| |||||||||||    
T  32629662 agttatgggaaagggtaattgaacgaagactaagaaaagagactcacgttacggataaccaatttggctttatgcctgg 32629740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 24178427 - 24178356
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggtttta 260  Q
    |||||||||||||||||||  || |||||| |||||| ||||||| ||||||||||||| ||||||||||||    
T  24178427 agttatgggaaagggtgattcaacgaagactaagaaaagagactcaagttacggataacaaatttggtttta 24178356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 2076706 - 2076627
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2076706 agttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 2076627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 24177574 - 24177652
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctgg 267  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24177574 agttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatgcctgg 24177652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 20318041 - 20318120
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20318041 agttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacagataaccaatttggttttatgcctggg 20318120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 1288757 - 1288681
Alignment:
Q  192 tatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1288757 tatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatggctggg 1288681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 8179843 - 8179922
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8179843 agttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 8179922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 452840 - 452769
Alignment:
Q  197 gaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  452840 gaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 452769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 270
Target Start/End: Original strand, 13148372 - 13148453
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctgggtg 270  Q
    ||||||||||||||||||| ||| |||||| |||||| |||||||||||||  ||||||||||||| |||||||||| ||||    
T  13148372 agttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttatcgataaccaatttgattttatgcctaggtg 13148453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 274
Target Start/End: Complemental strand, 45368856 - 45368773
Alignment:
Q  191 ttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctgggtggttg 274  Q
    |||||||||||||| || ||| |||||| |||||| |||||||  |||||||||||||||||||| |||||||||||| |||||    
T  45368856 ttatgggaaagggtaattgaacgaagactaagaaaagagactcatgttacggataaccaatttggctttatgcctgggaggttg 45368773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 24584841 - 24584759
Alignment:
Q  189 agttatgggaaagggtgatc---gaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    |||||||||||||||||||    |||  ||||| ||||||||||||||||||||  ||||||  ||||||||||||| |||||    
T  24584841 agttatgggaaagggtgattattgaacaaagactaagaaaggagactcgagttatagataactgatttggttttatgtctggg 24584759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 51441996 - 51441917
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51441996 agttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 51441917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 43241613 - 43241534
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43241613 agttatgggaaagggtgatcgaaagaagactaagaaaggagactcaagttacggataaccaatttggttttatgcctggg 43241534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 49348630 - 49348555
Alignment:
Q  193 atgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  49348630 atgggaaagggtgatcgaaagaagactaagaaagaagactcgagttatggataaccaatttggttttatgcctggg 49348555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 8670968 - 8671047
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    ||||||||||||||||||| ||||||| || |||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  8670968 agttatgggaaagggtgatggaaagaaaactaagaaaggagcctcgagttacggataaaaaatttggttttatgcctggg 8671047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 29173761 - 29173685
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcct 265  Q
    ||||||| |||||| |||| ||| ||| || |||||| ||||||||||||||||||||| |||||||||||||||||    
T  29173761 agttatgcgaaaggatgattgaacgaaaactaagaaaagagactcgagttacggataactaatttggttttatgcct 29173685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 268
Target Start/End: Original strand, 11681873 - 11681950
Alignment:
Q  191 ttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    ||||||||||||||||| ||  |||||| |||||| |||||| ||||||| ||||| ||| ||||||||||| |||||    
T  11681873 ttatgggaaagggtgattgagcgaagactaagaaaagagacttgagttaccgataatcaaattggttttatgtctggg 11681950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 435282 - 435367
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctgggtggttg 274  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  435282 agttatgggaaagggtgatcgaaagaagactaagaaaggaggctcgagttacggataaccaatttggttttatgcctgggaggttg 435367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 191 - 274
Target Start/End: Complemental strand, 1778247 - 1778164
Alignment:
Q  191 ttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctgggtggttg 274  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  1778247 ttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttgattttatgcctgggaggttg 1778164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 23907534 - 23907455
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23907534 agttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataatcaatttggttttatgcctggg 23907455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 48623759 - 48623680
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  48623759 agttatgggaaagggtgatcgaaagaagactaagaaagaagactcgagttacagataaccaatttggttttatgcctggg 48623680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 53703659 - 53703732
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatg 262  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||| ||| |||||||    
T  53703659 agttatgggaaagggtgatcgaaagaagactaagaaaggagactcgggttacagataaccaaattgattttatg 53703732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 27451405 - 27451333
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttat 261  Q
    |||||||||||||||| || ||  |||||| |||||| |||||||  ||||||||||||  ||||||||||||    
T  27451405 agttatgggaaagggtaattgagcgaagactaagaaaagagactcatgttacggataacttatttggttttat 27451333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 16001174 - 16001117
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataa 246  Q
    |||||||||||||||||||  || |||||| |||||| || ||||||| |||||||||    
T  16001174 agttatgggaaagggtgatttaacgaagactaagaaaagaaactcgagctacggataa 16001117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 39707528 - 39707593
Alignment:
Q  202 ggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctgg 267  Q
    |||||| ||| |||||| |||||| || | |||| ||||| ||||||||||| |||||||||||||    
T  39707528 ggtgattgaacgaagactaagaaaagaaagtcgatttacgaataaccaattttgttttatgcctgg 39707593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 36544202 - 36544281
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36544202 agttatgggaaagggtgatcgaaagaagactaagaaaggagactcaagttacggataaccaatttggttttatgcctggg 36544281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 42855223 - 42855168
Alignment:
Q  213 gaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    |||||| |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  42855223 gaagactaagaaaagagactcgcgttacggataaccaatttggttttatgcctggg 42855168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 15216501 - 15216422
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    ||||||| |||||||| || ||  |||||| |||||| ||||||| ||||| |||||| |||||||||||||||||||||    
T  15216501 agttatgcgaaagggtaattgagcgaagactaagaaaagagactcaagttatggataatcaatttggttttatgcctggg 15216422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 41445448 - 41445398
Alignment:
Q  215 agaccaagaaaggagactcgagttacggataaccaatttggttttatgcct 265  Q
    |||| |||||| || ||||||||||||| ||||||||||||||||||||||    
T  41445448 agactaagaaaagacactcgagttacggctaaccaatttggttttatgcct 41445398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 51448941 - 51448862
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  51448941 agttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatacctggg 51448862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 52137878 - 52137957
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    ||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||    
T  52137878 agttatgggaaagggtgatcgaaagaagactcagaaaggagattcgagttacggataaccaatttggttttatgcctggg 52137957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 38849152 - 38849231
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    ||||||||||||| ||||| ||| |||| | |||||| |||||||| ||||| |||||| |||||  |||||||||||||    
T  38849152 agttatgggaaagagtgattgaacgaaggctaagaaaagagactcgggttacagataactaattttcttttatgcctggg 38849231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 27916628 - 27916701
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatg 262  Q
    ||||||| ||||||||||| ||| |||||  |||||| ||||| | |||||  |||||||||||||||||||||    
T  27916628 agttatgagaaagggtgattgaacgaagaataagaaaagagacccaagttagtgataaccaatttggttttatg 27916701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 30724980 - 30724938
Alignment:
Q  220 aagaaaggagactcgagttacggataaccaatttggttttatg 262  Q
    |||||||||||| |||||||| ||| |||||||||||||||||    
T  30724980 aagaaaggagacacgagttactgatcaccaatttggttttatg 30724938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 191 - 268
Target Start/End: Original strand, 30520 - 30597
Alignment:
Q  191 ttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30520 ttatgggaaagggtgattgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 30597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 6082439 - 6082503
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaattt 253  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6082439 agttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaattt 6082503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 264
Target Start/End: Original strand, 30669945 - 30670020
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcc 264  Q
    |||||||| ||||| |||| ||| |||||| |||||| ||||||| ||||||||||||||||||||||||||||||    
T  30669945 agttatggcaaaggatgattgaacgaagactaagaaatgagactcaagttacggataaccaatttggttttatgcc 30670020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 2681668 - 2681595
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatg 262  Q
    ||||| ||||||||||||| ||| |||||  |||||| ||||||||||  | ||||||||||||||||||||||    
T  2681668 agttacgggaaagggtgattgaaggaagattaagaaaagagactcgaggaatggataaccaatttggttttatg 2681595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 5260480 - 5260407
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatg 262  Q
    |||||||||||||||| || ||  ||||||  ||||| |||||||  |||||||||||||||||||||||||||    
T  5260480 agttatgggaaagggtaattgagcgaagacttagaaaagagactcacgttacggataaccaatttggttttatg 5260407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 20428869 - 20428784
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctgggtggttg 274  Q
    |||||||||||||||| || ||| |||||| |||||  |||||||  |||||  ||||||||| ||||||||||| |||| |||||    
T  20428869 agttatgggaaagggtaattgaacgaagactaagaacagagactcacgttacaaataaccaatatggttttatgcttgggaggttg 20428784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 263
Target Start/End: Original strand, 3629347 - 3629390
Alignment:
Q  220 aagaaaggagactcgagttacggataaccaatttggttttatgc 263  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||    
T  3629347 aagaaaagagactcgagttacggataatcaatttgattttatgc 3629390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 13490 - 13411
Alignment:
Q  189 agttatgggaaagggtgatcgaaagaagaccaagaaaggagactcgagttacggataaccaatttggttttatgcctggg 268  Q
    |||||||||||| |||||| ||| |||||| |||| || |||||| ||||||||||||||||||||||||||||| ||||    
T  13490 agttatgggaaatggtgattgaacgaagactaagagagaagactccagttacggataaccaatttggttttatgcttggg 13411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 90297 - 90247
Alignment:
Q  214 aagaccaagaaaggagactcgagttacggataaccaatttggttttatgcc 264  Q
    ||||| |||||| |||||||||||||||||||||||||||| |||||||||    
T  90297 aagactaagaaaagagactcgagttacggataaccaatttgattttatgcc 90247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University