View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17211_high_17 (Length: 303)
Name: NF17211_high_17
Description: NF17211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17211_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 289
Target Start/End: Complemental strand, 52262894 - 52262616
Alignment:
| Q |
11 |
ttatactactcatattcccataattgcaccaaactccaatgcgaattcttattatttcaataaaagacacactcagaggaacaagaaaaattcttactct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52262894 |
ttatactactcatattcccataattgcacctaactccaatgtgaattcttattatttcaataaaagacacactcagaggaacaagaaaaattcttactct |
52262795 |
T |
|
| Q |
111 |
tttactgttcagggtgtggttgagtctaaagggattttcactaacgtgtgtattggttggcctggttcttattctgatgaacaggttttcgagaaatcgg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52262794 |
tttactgttcagggtgtggttgagtctaaagggattttcactaacgtgtgtattggttggcctggttcttattctgatgaataggttttcgagaaatcgg |
52262695 |
T |
|
| Q |
211 |
atttgtttaagagaattgtgaagggagatttgaaagatgcttgggttgctggaaattctgggtaccctttaatggatga |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52262694 |
atttgtttaagagaattgtgaagggagatttgaaagatgcttgggttgctggaaattctgggtaccctttaatggatga |
52262616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 288
Target Start/End: Complemental strand, 52251248 - 52250975
Alignment:
| Q |
12 |
tatactactcatattcccataattgcaccaaactccaatgcgaattcttattatttcaataaaagacacactcagaggaacaagaaaaattcttactctt |
111 |
Q |
| |
|
||||| || |||||||| ||||||||||| || ||||| ||||||||||| ||||||| || || |||||||||||| |||||| | | |||||| |
|
|
| T |
52251248 |
tataccacacatattccaataattgcacctaagaacaatgtgaattcttatt---tcaataagaggcagactcagaggaaccagaaaactgcatactctg |
52251152 |
T |
|
| Q |
112 |
ttactgttcagggtgtggttgagtctaaagggattttcactaacgtgtgtattggttggcctggttcttattctgatgaacaggttttcgagaaatcgga |
211 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| |||||||| | || | | |||||| |||||||||||| |||||| || ||||| |||||||| | |
|
|
| T |
52251151 |
ttactgttcaaggtgtggttgatgctaaaggggttttcactgatgtttttcttggttaccctggttcttataatgatgatcaagttttggagaaatctgt |
52251052 |
T |
|
| Q |
212 |
tttgtttaagagaattgtga-agggagatttgaaagatgcttgggttgctggaaattctgggtaccctttaatggatg |
288 |
Q |
| |
|
||| | ||||| | ||| ||||| ||||||||||| ||||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
52251051 |
aatgtatcagagagctatgacaggga-atttgaaagattcttgggttgttggaaattctgggttccctttgatggatg |
52250975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University